CF835984

Overview
NameCF835984
Unique NameCF835984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_FUSNN (50S ribosomal protein L15 OS=Fusobacterium nucleatum subsp. nucleatum GN=rplO PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.312e-20
Identity = 62/137 (45.26%), Postives = 85/137 (62.04%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG ++G G + G G  GQ SR G GV+  FEGGQMP+YRR+PK RG +  +     +Y  ++L  +    F +G+EVSLETL  K LI   GR+    +K+LG+GEL+KKL  K    S SAK  +EA G T+ ++
Sbjct:   19 GRGNSSGWGKTAGKGSNGQNSRAGGGVKPYFEGGQMPIYRRVPK-RGFSNAIFK--KEYTVISLAFLN-ENFEDGEEVSLETLFNKCLIK-KGRD---GVKVLGNGELNKKLTVKVHKISKSAKAAVEAKGGTVELV 147          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_LACH4 (50S ribosomal protein L15 OS=Lactobacillus helveticus (strain DPC 4571) GN=rplO PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.326e-20
Identity = 58/137 (42.34%), Postives = 83/137 (60.58%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG ++G G + G G +GQ +R G   R GFEGGQMPL+R +PK     G  +    +Y  VNL D+    F +G EV++ETLK+ GL+    ++    +K+LG+GEL  KL  K    S +AK+ +EAAG T+ V+
Sbjct:   20 GRGTSSGYGKTSGRGQKGQLARQGGHTRLGFEGGQMPLFRTMPK----RGFKNINRKEYAIVNLDDLNK--FNDGSEVTVETLKENGLV----KKELSGVKLLGNGELKVKLTVKVNKVSAAAKKAVEAAGGTVEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_CLONN (50S ribosomal protein L15 OS=Clostridium novyi (strain NT) GN=rplO PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.326e-20
Identity = 60/131 (45.80%), Postives = 79/131 (60.31%), Query Frame = -3
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRG  +G G + G G +GQ +R G GVR GFEGGQMPLYRR+PK     G  +    +YV VN+  +    F +G EV+ E LK  G+I+    + K  +KILG+G L KKL  KA  F+  A EK+E+ G
Sbjct:   20 GRGNGSGLGKTAGKGHKGQNARSGGGVRPGFEGGQMPLYRRLPK----RGFTNIFAKEYVEVNVSRLNI--FEDGTEVTPEVLKANGVIS----KVKDGVKILGNGTLEKKLTIKATKFTKGAVEKIESIG 140          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_CLOBM (50S ribosomal protein L15 OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=rplO PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.326e-20
Identity = 61/137 (44.53%), Postives = 81/137 (59.12%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG  +G G + G G  GQ SR G GVR GFEGGQMPLYRR+PK     G  +    +Y  +NL  +    F +G  V+ E L +K ++    ++ K  +KILG+G + KKL  KA  FS SA EK+EAAG  + V+
Sbjct:   20 GRGTGSGLGKTSGKGQNGQNSRSGGGVRPGFEGGQMPLYRRLPK----RGFKNIFAKEYAAINLDRLNC--FEDGTVVTPELLVEKRVV----KKVKDGVKILGNGNIEKKLTVKAAKFSKSAIEKIEAAGGKVEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_CLOBL (50S ribosomal protein L15 OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=rplO PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.326e-20
Identity = 61/137 (44.53%), Postives = 81/137 (59.12%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG  +G G + G G  GQ SR G GVR GFEGGQMPLYRR+PK     G  +    +Y  +NL  +    F +G  V+ E L +K ++    ++ K  +KILG+G + KKL  KA  FS SA EK+EAAG  + V+
Sbjct:   20 GRGTGSGLGKTSGKGQNGQNSRSGGGVRPGFEGGQMPLYRRLPK----RGFKNIFAKEYAAINLDRLNC--FEDGTVVTPELLVEKRVV----KKVKDGVKILGNGNIEKKLTVKAAKFSKSAIEKIEAAGGKVEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_CLOBK (50S ribosomal protein L15 OS=Clostridium botulinum (strain Okra / Type B1) GN=rplO PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.326e-20
Identity = 61/137 (44.53%), Postives = 81/137 (59.12%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG  +G G + G G  GQ SR G GVR GFEGGQMPLYRR+PK     G  +    +Y  +NL  +    F +G  V+ E L +K ++    ++ K  +KILG+G + KKL  KA  FS SA EK+EAAG  + V+
Sbjct:   20 GRGTGSGLGKTSGRGQNGQNSRSGGGVRPGFEGGQMPLYRRLPK----RGFKNIFAKEYAAINLDRLNC--FEDGTVVTPELLVEKRVV----KKVKDGVKILGNGNIEKKLTVKAAKFSKSAIEKIEAAGGKVEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_CLOBJ (50S ribosomal protein L15 OS=Clostridium botulinum (strain Kyoto / Type A2) GN=rplO PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.326e-20
Identity = 61/137 (44.53%), Postives = 81/137 (59.12%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG  +G G + G G  GQ SR G GVR GFEGGQMPLYRR+PK     G  +    +Y  +NL  +    F +G  V+ E L +K ++    ++ K  +KILG+G + KKL  KA  FS SA EK+EAAG  + V+
Sbjct:   20 GRGTGSGLGKTSGRGQNGQNSRSGGGVRPGFEGGQMPLYRRLPK----RGFKNIFAKEYAAINLDRLNC--FEDGTVVTPELLVEKRVV----KKVKDGVKILGNGNIEKKLTVKAAKFSKSAIEKIEAAGGKVEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_CLOBH (50S ribosomal protein L15 OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=rplO PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.326e-20
Identity = 61/137 (44.53%), Postives = 81/137 (59.12%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG  +G G + G G  GQ SR G GVR GFEGGQMPLYRR+PK     G  +    +Y  +NL  +    F +G  V+ E L +K ++    ++ K  +KILG+G + KKL  KA  FS SA EK+EAAG  + V+
Sbjct:   20 GRGTGSGLGKTSGRGQNGQNSRSGGGVRPGFEGGQMPLYRRLPK----RGFKNIFAKEYAAINLDRLNC--FEDGTVVTPELLVEKRVV----KKVKDGVKILGNGNIEKKLTVKAAKFSKSAIEKIEAAGGKVEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_CLOB6 (50S ribosomal protein L15 OS=Clostridium botulinum (strain 657 / Type Ba4) GN=rplO PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.326e-20
Identity = 61/137 (44.53%), Postives = 81/137 (59.12%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG  +G G + G G  GQ SR G GVR GFEGGQMPLYRR+PK     G  +    +Y  +NL  +    F +G  V+ E L +K ++    ++ K  +KILG+G + KKL  KA  FS SA EK+EAAG  + V+
Sbjct:   20 GRGTGSGLGKTSGRGQNGQNSRSGGGVRPGFEGGQMPLYRRLPK----RGFKNIFAKEYAAINLDRLNC--FEDGTVVTPELLVEKRVV----KKVKDGVKILGNGNIEKKLTVKAAKFSKSAIEKIEAAGGKVEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_CLOB1 (50S ribosomal protein L15 OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=rplO PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.326e-20
Identity = 61/137 (44.53%), Postives = 81/137 (59.12%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG  +G G + G G  GQ SR G GVR GFEGGQMPLYRR+PK     G  +    +Y  +NL  +    F +G  V+ E L +K ++    ++ K  +KILG+G + KKL  KA  FS SA EK+EAAG  + V+
Sbjct:   20 GRGTGSGLGKTSGRGQNGQNSRSGGGVRPGFEGGQMPLYRRLPK----RGFKNIFAKEYAAINLDRLNC--FEDGTVVTPELLVEKRVV----KKVKDGVKILGNGNIEKKLTVKAAKFSKSAIEKIEAAGGKVEVI 146          
The following BLAST results are available for this feature:
BLAST of CF835984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL15_FUSNN3.312e-2045.2650S ribosomal protein L15 OS=Fusobacterium nucleat... [more]
RL15_LACH44.326e-2042.3450S ribosomal protein L15 OS=Lactobacillus helveti... [more]
RL15_CLONN4.326e-2045.8050S ribosomal protein L15 OS=Clostridium novyi (st... [more]
RL15_CLOBM4.326e-2044.5350S ribosomal protein L15 OS=Clostridium botulinum... [more]
RL15_CLOBL4.326e-2044.5350S ribosomal protein L15 OS=Clostridium botulinum... [more]
RL15_CLOBK4.326e-2044.5350S ribosomal protein L15 OS=Clostridium botulinum... [more]
RL15_CLOBJ4.326e-2044.5350S ribosomal protein L15 OS=Clostridium botulinum... [more]
RL15_CLOBH4.326e-2044.5350S ribosomal protein L15 OS=Clostridium botulinum... [more]
RL15_CLOB64.326e-2044.5350S ribosomal protein L15 OS=Clostridium botulinum... [more]
RL15_CLOB14.326e-2044.5350S ribosomal protein L15 OS=Clostridium botulinum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02D20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835984 ID=CF835984; Name=CF835984; organism=Citrus sinensis; type=EST; length=806bp
TTTTTTTTTTTTTTTCAATCAATGGTGATCTAATCAACATAATACCTGTA
GATTTGGCTTTCCAGCTAAGTAACATGAGAATCAGAACATTGAGAGTTTA
GCTGAATTTTTAAAAGGGAGGGGATACAAAGAAGAGACAAATTCCAGAAA
TTACAGCTATAGACATCCTCCTCTCATTTCGCTACCCCGAAAACCTAAAA
CCAGAGAAAAAGAATCGAAGACAATTCAATGGCTCTACTTAGTTACAGTG
AGTGAAAAAAACCAAGTGGTTCAAGCTGAAGTTGAATCGGATGCAGCTGC
AGCAGCTCTCTTCTTGGCGAAGTATTCTTCAGCTCGTGCAAGGTTCTTAG
CTACTGATGGTTTCACCCACTTCTTTCGGCCAGGTAAGACAGTGAGGGTA
CAGCCTGCAGCTTCAAGCTTCTCCTTTGCTGATGTAGAGAAGGCACGAGC
CTTGAAGTTCAGCTTCTTGCTTAATTCTCCATCACCAAGAATCTTTAAAG
GCAGTTTCCTTTCTCTTCCTGAGGGATTGATCAAGCCCTTCTTCTTCAAA
GTCTCTAGTGAGACTTCATCCCCCTCTAGAAAACCAGCTGCTTCTATGTC
TTTCAAGTTAACAGGGACATACTTAGGTAACCCAGCATGCATACCTCCGG
CAATCCCACGGAGCTTAGGAATTCGACGATAAAGAGGCATTTGACCACCT
TCAAAACCCTTTCTAACGCCAGGACCAAACCTCGATTTCTGACCTCTCAT
TCCAAACCCACAGCTGTTACCTTGCCCAGCTGCTATTCCTCTCCCCCTTT
CTCTTC
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