CF835984

Overview
NameCF835984
Unique NameCF835984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STACT (50S ribosomal protein L15 OS=Staphylococcus carnosus (strain TM300) GN=rplO PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 5.649e-20
Identity = 57/131 (43.51%), Postives = 78/131 (59.54%), Query Frame = -3
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRG A G G + G G +GQK+R G  VR GFEGGQ+PL+RR+PK     G  +    ++  VNL+ +    F EG EV+ E L + G++    +  K  +K+LG+G L KKL  KA  FS SA E ++A G
Sbjct:   20 GRGAATGNGKTSGRGQKGQKARSGGKVRPGFEGGQLPLFRRLPK----RGFTNINRKEFAVVNLEQLNR--FEEGTEVTPELLIETGVV----KNAKAGIKVLGNGSLEKKLTVKAHNFSASAAEAIDAKG 140          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_LACPL (50S ribosomal protein L15 OS=Lactobacillus plantarum GN=rplO PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.649e-20
Identity = 62/134 (46.27%), Postives = 82/134 (61.19%), Query Frame = -3
Query:  403 RERGRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 804
            R  GRG ++GQG + G G +GQK+R    VR GFEGGQMPLYRRIPK     G  +    +Y  VNL  +    F +G EV+ E+LK+ GL+  S       +K+LG+G+L+KKL  KA  FS +A   +EAAG
Sbjct:   17 RRIGRGDSSGQGKTSGRGQKGQKAR--GKVRVGFEGGQMPLYRRIPK----RGFTNINRKEYAVVNLDGLNR--FDDGAEVTPESLKEAGLVKKSS-----AVKVLGNGKLNKKLTVKASKFSATAVAAIEAAG 137          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_LACGA (50S ribosomal protein L15 OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=rplO PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.649e-20
Identity = 56/137 (40.88%), Postives = 82/137 (59.85%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG ++G G + G G +GQ +R G   R GFEGGQMPL+RR+PK     G  +    +Y  +NL D+    F +G EV+++TLK  GL+    ++    +K+L +GEL  KL  K    S +AK+ +EAAG T+ V+
Sbjct:   20 GRGTSSGYGKTAGRGQKGQLARTGGKTRLGFEGGQMPLFRRMPK----RGFKNVNRKEYAIINLNDLNR--FDDGSEVTIDTLKSSGLV----KKELAGVKLLANGELKVKLTVKVNKVSEAAKKAVEAAGGTVEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_LACAC (50S ribosomal protein L15 OS=Lactobacillus acidophilus GN=rplO PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.649e-20
Identity = 58/137 (42.34%), Postives = 82/137 (59.85%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG ++G G + G G +GQ +R G   R GFEGGQMPL+R +PK     G  +    +Y  VNL D+    F +G EV++ TLK+ GL+    ++    +K+LG+GEL  KL  K    S +AKE +EAAG T+ V+
Sbjct:   20 GRGTSSGYGKTSGRGQKGQLARQGGHTRLGFEGGQMPLFRTMPK----RGFKNVNRKEYAIVNLDDLNK--FEDGSEVTVATLKENGLV----KKELSGVKLLGNGELKVKLTVKVNKVSAAAKEAVEAAGGTVEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_ROSS1 (50S ribosomal protein L15 OS=Roseiflexus sp. (strain RS-1) GN=rplO PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.378e-20
Identity = 58/137 (42.34%), Postives = 82/137 (59.85%), Query Frame = -3
Query:  403 RER---GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 804
            RER   GRGI +G+G + G GM GQK+R GP     FEGGQM + R++PKLRG          +Y  +N+  +      +G E+++E +  +G I+P+      P+KILGDGEL +KL   A  FS SA+ ++EAAG
Sbjct:   14 RERKRIGRGIGSGKGKTGGKGMMGQKARSGPKPSPSFEGGQMRITRKMPKLRGFKNRWRV---EYQVINIGQLNDVP--DGTELTIEEMVAQGWIHPA-----KPVKILGDGELERKLTIHAHKFSASARARIEAAG 140          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_NATTJ (50S ribosomal protein L15 OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=rplO PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.378e-20
Identity = 58/140 (41.43%), Postives = 84/140 (60.00%), Query Frame = -3
Query:  385 RERGRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 804
            + +GRG+++G G + G G +GQ +R G GVR GFEGGQMPL  R+PK     G  +A   +Y  VN++ +    F EG E++ E L +  +I    +  K  +K+LG GE+ KK+  KA  FS  AKEK+E AG  + V+
Sbjct:   17 KRKGRGMSSGLGKTAGRGHKGQNARTGGGVRPGFEGGQMPLQERLPK----RGFTNAFKKEYAIVNVETLN--DFEEGTEITPEVLLESKVI----KGVKDGIKVLGKGEIDKKITVKAHKFSKQAKEKIEEAGGKVEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_LACJO (50S ribosomal protein L15 OS=Lactobacillus johnsonii GN=rplO PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.378e-20
Identity = 56/137 (40.88%), Postives = 82/137 (59.85%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG ++G G + G G +GQ +R G   R GFEGGQMPL+RR+PK     G  +    +Y  +NL D+    F +G EV+++TLK  GL+    ++    +K+L +GEL  KL  K    S +AK+ +EAAG T+ V+
Sbjct:   20 GRGTSSGYGKTAGRGQKGQLARTGGKTRLGFEGGQMPLFRRMPK----RGFKNVNRKEYAIINLNDLNR--FDDGSEVTIDTLKSSGLV----KKELAGVKLLANGELKVKLTVKVNKASEAAKKAVEAAGGTVEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_EXISA (50S ribosomal protein L15 OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=rplO PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.378e-20
Identity = 60/137 (43.80%), Postives = 83/137 (60.58%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG+A G G + G G +GQK+R G GVR GFEGGQ PLYRR+PK     G  +    +Y  V+L  +    F  G EV+ E L + G+++ +    K  +K+L +G+L  KL  KA  FS +AKE +EAAG T+ V+
Sbjct:   20 GRGMATGNGKTSGRGHKGQKARSGGGVRPGFEGGQNPLYRRLPK----RGFNNPTRKEYAVVSLDTLNR--FEAGTEVTPELLIETGVVSSA----KDGIKVLANGKLETKLTVKANKFSGAAKEAIEAAGGTVEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_CLOAB (50S ribosomal protein L15 OS=Clostridium acetobutylicum GN=rplO PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.378e-20
Identity = 62/131 (47.33%), Postives = 82/131 (62.60%), Query Frame = -3
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRG  +G G + G G +GQ +R G GVR GFEGGQMPLYRR+PK RG    + A     V V+  +I    F +G EV+++ L +KG+I    ++    +KILG+GEL KKL  K   +S SA EK+EAAG
Sbjct:   20 GRGTGSGLGRNAGKGEKGQNARSGGGVRPGFEGGQMPLYRRLPK-RGFT-NIFAKTITAVNVDRLNI----FEDGTEVTIDALIEKGII----KKVNDGVKILGNGELKKKLVVKVNKYSKSAAEKIEAAG 140          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STAHJ (50S ribosomal protein L15 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rplO PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.636e-20
Identity = 56/131 (42.75%), Postives = 77/131 (58.78%), Query Frame = -3
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRG  +G G + G G +GQK+R G GVR GFEGGQ+PL+RR+PK     G  +    +Y  VNL  +    F +G EV+   L + G++    +  K  +K+LG+G L KKL  KA  FS SA E ++A G
Sbjct:   20 GRGAGSGNGKTSGRGQKGQKARSGGGVRPGFEGGQLPLFRRLPK----RGFTNINRKEYAIVNLDQLNK--FEDGTEVTPALLVETGVV----KNEKSGIKVLGNGSLDKKLTVKAHKFSASAVEAIDAKG 140          
The following BLAST results are available for this feature:
BLAST of CF835984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL15_STACT5.649e-2043.5150S ribosomal protein L15 OS=Staphylococcus carnos... [more]
RL15_LACPL5.649e-2046.2750S ribosomal protein L15 OS=Lactobacillus plantar... [more]
RL15_LACGA5.649e-2040.8850S ribosomal protein L15 OS=Lactobacillus gasseri... [more]
RL15_LACAC5.649e-2042.3450S ribosomal protein L15 OS=Lactobacillus acidoph... [more]
RL15_ROSS17.378e-2042.3450S ribosomal protein L15 OS=Roseiflexus sp. (stra... [more]
RL15_NATTJ7.378e-2041.4350S ribosomal protein L15 OS=Natranaerobius thermo... [more]
RL15_LACJO7.378e-2040.8850S ribosomal protein L15 OS=Lactobacillus johnson... [more]
RL15_EXISA7.378e-2043.8050S ribosomal protein L15 OS=Exiguobacterium sp. (... [more]
RL15_CLOAB7.378e-2047.3350S ribosomal protein L15 OS=Clostridium acetobuty... [more]
RL15_STAHJ9.636e-2042.7550S ribosomal protein L15 OS=Staphylococcus haemol... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02D20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835984 ID=CF835984; Name=CF835984; organism=Citrus sinensis; type=EST; length=806bp
TTTTTTTTTTTTTTTCAATCAATGGTGATCTAATCAACATAATACCTGTA
GATTTGGCTTTCCAGCTAAGTAACATGAGAATCAGAACATTGAGAGTTTA
GCTGAATTTTTAAAAGGGAGGGGATACAAAGAAGAGACAAATTCCAGAAA
TTACAGCTATAGACATCCTCCTCTCATTTCGCTACCCCGAAAACCTAAAA
CCAGAGAAAAAGAATCGAAGACAATTCAATGGCTCTACTTAGTTACAGTG
AGTGAAAAAAACCAAGTGGTTCAAGCTGAAGTTGAATCGGATGCAGCTGC
AGCAGCTCTCTTCTTGGCGAAGTATTCTTCAGCTCGTGCAAGGTTCTTAG
CTACTGATGGTTTCACCCACTTCTTTCGGCCAGGTAAGACAGTGAGGGTA
CAGCCTGCAGCTTCAAGCTTCTCCTTTGCTGATGTAGAGAAGGCACGAGC
CTTGAAGTTCAGCTTCTTGCTTAATTCTCCATCACCAAGAATCTTTAAAG
GCAGTTTCCTTTCTCTTCCTGAGGGATTGATCAAGCCCTTCTTCTTCAAA
GTCTCTAGTGAGACTTCATCCCCCTCTAGAAAACCAGCTGCTTCTATGTC
TTTCAAGTTAACAGGGACATACTTAGGTAACCCAGCATGCATACCTCCGG
CAATCCCACGGAGCTTAGGAATTCGACGATAAAGAGGCATTTGACCACCT
TCAAAACCCTTTCTAACGCCAGGACCAAACCTCGATTTCTGACCTCTCAT
TCCAAACCCACAGCTGTTACCTTGCCCAGCTGCTATTCCTCTCCCCCTTT
CTCTTC
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