CF835984

Overview
NameCF835984
Unique NameCF835984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_BACC1 (50S ribosomal protein L15 OS=Bacillus cereus (strain ATCC 10987) GN=rplO PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.644e-19
Identity = 59/137 (43.07%), Postives = 82/137 (59.85%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRGI +G G + G G +GQ +R G GVR GFEGGQ PL+RR+PK     G  +    ++  VNL  +    F +G EV+ E L + G+I+    +    +KIL  G + KKL  KA  FS+SAKE +EAAG ++ V+
Sbjct:   20 GRGIGSGNGKTAGKGHKGQNARSGGGVRLGFEGGQTPLFRRLPK----RGFTNINRKEFAIVNLSTLNR--FEDGTEVTPELLLETGVIS----KLNDGVKILASGAVEKKLTVKAHKFSSSAKEAIEAAGGSVEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_BACC0 (50S ribosomal protein L15 OS=Bacillus cereus (strain AH820) GN=rplO PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.644e-19
Identity = 59/137 (43.07%), Postives = 82/137 (59.85%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRGI +G G + G G +GQ +R G GVR GFEGGQ PL+RR+PK     G  +    ++  VNL  +    F +G EV+ E L + G+I+    +    +KIL  G + KKL  KA  FS+SAKE +EAAG ++ V+
Sbjct:   20 GRGIGSGNGKTAGKGHKGQNARSGGGVRLGFEGGQTPLFRRLPK----RGFTNINRKEFAIVNLSTLNR--FEDGTEVTPELLLETGVIS----KLNDGVKILASGAVEKKLTVKAHKFSSSAKEAIEAAGGSVEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_BACAN (50S ribosomal protein L15 OS=Bacillus anthracis GN=rplO PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.644e-19
Identity = 59/137 (43.07%), Postives = 82/137 (59.85%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRGI +G G + G G +GQ +R G GVR GFEGGQ PL+RR+PK     G  +    ++  VNL  +    F +G EV+ E L + G+I+    +    +KIL  G + KKL  KA  FS+SAKE +EAAG ++ V+
Sbjct:   20 GRGIGSGNGKTAGKGHKGQNARSGGGVRLGFEGGQTPLFRRLPK----RGFTNINRKEFAIVNLSTLNR--FEDGTEVTPELLLETGVIS----KLNDGVKILASGAVEKKLTVKAHKFSSSAKEAIEAAGGSVEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_BACAH (50S ribosomal protein L15 OS=Bacillus thuringiensis (strain Al Hakam) GN=rplO PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.644e-19
Identity = 59/137 (43.07%), Postives = 82/137 (59.85%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRGI +G G + G G +GQ +R G GVR GFEGGQ PL+RR+PK     G  +    ++  VNL  +    F +G EV+ E L + G+I+    +    +KIL  G + KKL  KA  FS+SAKE +EAAG ++ V+
Sbjct:   20 GRGIGSGNGKTAGKGHKGQNARSGGGVRLGFEGGQTPLFRRLPK----RGFTNINRKEFAIVNLSTLNR--FEDGTEVTPELLLETGVIS----KLNDGVKILASGAVEKKLTVKAHKFSSSAKEAIEAAGGSVEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_BACAC (50S ribosomal protein L15 OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=rplO PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.644e-19
Identity = 59/137 (43.07%), Postives = 82/137 (59.85%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRGI +G G + G G +GQ +R G GVR GFEGGQ PL+RR+PK     G  +    ++  VNL  +    F +G EV+ E L + G+I+    +    +KIL  G + KKL  KA  FS+SAKE +EAAG ++ V+
Sbjct:   20 GRGIGSGNGKTAGKGHKGQNARSGGGVRLGFEGGQTPLFRRLPK----RGFTNINRKEFAIVNLSTLNR--FEDGTEVTPELLLETGVIS----KLNDGVKILASGAVEKKLTVKAHKFSSSAKEAIEAAGGSVEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_BACAA (50S ribosomal protein L15 OS=Bacillus anthracis (strain A0248) GN=rplO PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.644e-19
Identity = 59/137 (43.07%), Postives = 82/137 (59.85%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRGI +G G + G G +GQ +R G GVR GFEGGQ PL+RR+PK     G  +    ++  VNL  +    F +G EV+ E L + G+I+    +    +KIL  G + KKL  KA  FS+SAKE +EAAG ++ V+
Sbjct:   20 GRGIGSGNGKTAGKGHKGQNARSGGGVRLGFEGGQTPLFRRLPK----RGFTNINRKEFAIVNLSTLNR--FEDGTEVTPELLLETGVIS----KLNDGVKILASGAVEKKLTVKAHKFSSSAKEAIEAAGGSVEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_ACHLI (50S ribosomal protein L15 OS=Acholeplasma laidlawii (strain PG-8A) GN=rplO PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.644e-19
Identity = 61/137 (44.53%), Postives = 82/137 (59.85%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG  +G G + G G +GQK+R G GVR GFEGGQ+P ++RIPK RG          +Y  VN K++    F +G  V+ E L +  L++    +    +KIL DG+L KKL  KA  FS SAKE +EAAG T+ V+
Sbjct:   20 GRGPGSGTGKTSGKGHKGQKARSGGGVRPGFEGGQIPFFQRIPK-RGFNNHTRV---EYAIVNTKELNV--FEDGTVVTPELLLQTKLVS----KVLAGVKILADGKLEKKLTVKANKFSNSAKEAIEAAGGTIEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STAS1 (50S ribosomal protein L15 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rplO PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.147e-19
Identity = 57/131 (43.51%), Postives = 75/131 (57.25%), Query Frame = -3
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRG A G G + G G +GQK+R G  VR GFEGGQ+PL+RR+PK     G  +    +Y  VNL  +    F +G EV+   L + G++    +  K  +KILG G L KKL  KA  FS SA E ++A G
Sbjct:   20 GRGAATGNGKTSGRGQKGQKARSGGSVRPGFEGGQLPLFRRLPK----RGFTNINRKEYAIVNLDQLNK--FEDGTEVTPALLVESGVV----KSEKSGIKILGTGSLDKKLTVKASKFSASAAEAIDAKG 140          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STAES (50S ribosomal protein L15 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rplO PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.147e-19
Identity = 56/131 (42.75%), Postives = 76/131 (58.02%), Query Frame = -3
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRG A G G + G G +GQK+R G  VR GFEGGQ+PL+RR+PK     G  +    +Y  VNL  +    F +G EV+   L + G++    +  K  +K+LG+G L KKL  KA  FS SA E ++A G
Sbjct:   20 GRGAATGNGKTSGRGQKGQKARSGGKVRPGFEGGQLPLFRRLPK----RGFTNINRKEYAIVNLDQLNK--FEDGTEVTPALLVESGVV----KNEKSGIKVLGNGSLDKKLTVKAHKFSASAAEAIDAKG 140          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_BACCR (50S ribosomal protein L15 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rplO PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.147e-19
Identity = 58/137 (42.34%), Postives = 82/137 (59.85%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRGI +G G + G G +GQ +R G GVR GFEGGQ PL+RR+PK     G  +    ++  VNL  +    F +G EV+ E L + G+I+    +    +K+L  G + KKL  KA  FS+SAKE +EAAG ++ V+
Sbjct:   20 GRGIGSGNGKTAGKGHKGQNARSGGGVRLGFEGGQTPLFRRLPK----RGFTNINRKEFAIVNLSTLNR--FEDGTEVTPELLLETGVIS----KLNDGVKVLASGAVEKKLTVKAHKFSSSAKEAIEAAGGSVEVI 146          
The following BLAST results are available for this feature:
BLAST of CF835984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL15_BACC11.644e-1943.0750S ribosomal protein L15 OS=Bacillus cereus (stra... [more]
RL15_BACC01.644e-1943.0750S ribosomal protein L15 OS=Bacillus cereus (stra... [more]
RL15_BACAN1.644e-1943.0750S ribosomal protein L15 OS=Bacillus anthracis GN... [more]
RL15_BACAH1.644e-1943.0750S ribosomal protein L15 OS=Bacillus thuringiensi... [more]
RL15_BACAC1.644e-1943.0750S ribosomal protein L15 OS=Bacillus anthracis (s... [more]
RL15_BACAA1.644e-1943.0750S ribosomal protein L15 OS=Bacillus anthracis (s... [more]
RL15_ACHLI1.644e-1944.5350S ribosomal protein L15 OS=Acholeplasma laidlawi... [more]
RL15_STAS12.147e-1943.5150S ribosomal protein L15 OS=Staphylococcus saprop... [more]
RL15_STAES2.147e-1942.7550S ribosomal protein L15 OS=Staphylococcus epider... [more]
RL15_BACCR2.147e-1942.3450S ribosomal protein L15 OS=Bacillus cereus (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02D20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835984 ID=CF835984; Name=CF835984; organism=Citrus sinensis; type=EST; length=806bp
TTTTTTTTTTTTTTTCAATCAATGGTGATCTAATCAACATAATACCTGTA
GATTTGGCTTTCCAGCTAAGTAACATGAGAATCAGAACATTGAGAGTTTA
GCTGAATTTTTAAAAGGGAGGGGATACAAAGAAGAGACAAATTCCAGAAA
TTACAGCTATAGACATCCTCCTCTCATTTCGCTACCCCGAAAACCTAAAA
CCAGAGAAAAAGAATCGAAGACAATTCAATGGCTCTACTTAGTTACAGTG
AGTGAAAAAAACCAAGTGGTTCAAGCTGAAGTTGAATCGGATGCAGCTGC
AGCAGCTCTCTTCTTGGCGAAGTATTCTTCAGCTCGTGCAAGGTTCTTAG
CTACTGATGGTTTCACCCACTTCTTTCGGCCAGGTAAGACAGTGAGGGTA
CAGCCTGCAGCTTCAAGCTTCTCCTTTGCTGATGTAGAGAAGGCACGAGC
CTTGAAGTTCAGCTTCTTGCTTAATTCTCCATCACCAAGAATCTTTAAAG
GCAGTTTCCTTTCTCTTCCTGAGGGATTGATCAAGCCCTTCTTCTTCAAA
GTCTCTAGTGAGACTTCATCCCCCTCTAGAAAACCAGCTGCTTCTATGTC
TTTCAAGTTAACAGGGACATACTTAGGTAACCCAGCATGCATACCTCCGG
CAATCCCACGGAGCTTAGGAATTCGACGATAAAGAGGCATTTGACCACCT
TCAAAACCCTTTCTAACGCCAGGACCAAACCTCGATTTCTGACCTCTCAT
TCCAAACCCACAGCTGTTACCTTGCCCAGCTGCTATTCCTCTCCCCCTTT
CTCTTC
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