CF835984

Overview
NameCF835984
Unique NameCF835984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_BACC4 (50S ribosomal protein L15 OS=Bacillus cereus (strain B4264) GN=rplO PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.147e-19
Identity = 58/137 (42.34%), Postives = 82/137 (59.85%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRGI +G G + G G +GQ +R G GVR GFEGGQ PL+RR+PK     G  +    ++  VNL  +    F +G EV+ E L + G+I+    +    +K+L  G + KKL  KA  FS+SAKE +EAAG ++ V+
Sbjct:   20 GRGIGSGNGKTAGKGHKGQNARSGGGVRLGFEGGQTPLFRRLPK----RGFTNINRKEFAIVNLSTLNR--FEDGTEVTPELLLETGVIS----KLNDGVKVLASGAVEKKLTVKAHKFSSSAKEAIEAAGGSVEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_LACDB (50S ribosomal protein L15 OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=rplO PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.804e-19
Identity = 57/137 (41.61%), Postives = 80/137 (58.39%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG ++G G + G G +GQ +R G   R GFEGGQMPL+R +PK     G  +    +Y  VNL D+    F EG  V  E LK KGL+    +++   +K+LG+G+L+ KL  K    S +AK  +EAAG T+ V+
Sbjct:   20 GRGTSSGFGKTSGRGQKGQHARSGGNTRLGFEGGQMPLFRTMPK----RGFKNINRKEYAIVNLADLNK--FEEGSVVDFEALKAKGLV----KKQLSGVKVLGNGDLNVKLTVKVNKVSEAAKSAIEAAGGTVEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_LACDA (50S ribosomal protein L15 OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=rplO PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.804e-19
Identity = 57/137 (41.61%), Postives = 80/137 (58.39%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG ++G G + G G +GQ +R G   R GFEGGQMPL+R +PK     G  +    +Y  VNL D+    F EG  V  E LK KGL+    +++   +K+LG+G+L+ KL  K    S +AK  +EAAG T+ V+
Sbjct:   20 GRGTSSGFGKTSGRGQKGQHARSGGNTRLGFEGGQMPLFRTMPK----RGFKNINRKEYAIVNLADLNK--FEEGSVVDFEALKAKGLV----KKQLSGVKVLGNGDLNVKLTVKVNKVSEAAKSAIEAAGGTVEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_CORDI (50S ribosomal protein L15 OS=Corynebacterium diphtheriae GN=rplO PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.804e-19
Identity = 60/135 (44.44%), Postives = 82/135 (60.74%), Query Frame = -3
Query:  391 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLT 795
            GRG  A +G + G G +G K+R    V   FEGGQMPL+ R+PKL+G           Y  VN+ D+E A F +G E+++  +  KGL+ P     K P+K+LG+GE+S KLN  A  FS SA EK+EAAG ++T
Sbjct:   24 GRG-EASKGKTAGRGTKGTKAR--KQVSAAFEGGQMPLHMRLPKLKGFKNPAKV---YYQVVNVSDLEKA-FPQGGEIAVADIVAKGLVRP-----KQPVKVLGNGEISVKLNVTATKFSKSAVEKIEAAGGSVT 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STRMU (50S ribosomal protein L15 OS=Streptococcus mutans GN=rplO PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.662e-19
Identity = 56/137 (40.88%), Postives = 81/137 (59.12%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG ++G G + G G +GQK+R G  +R GFEGGQ PL+RR+PK     G  +    +Y  VNL  +    F +G EV+   L + G++    +  K  +KILG+GEL+KKL  KA  FS SA+  + A G ++ V+
Sbjct:   20 GRGSSSGNGKTAGRGQKGQKARSGGNIRSGFEGGQTPLFRRLPK----RGFTNINAKEYALVNLDQLNV--FEDGAEVTPVVLVETGIV----KAEKSGIKILGNGELTKKLTVKAAKFSKSAEAAIIAKGGSIEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_PELTS (50S ribosomal protein L15 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rplO PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.662e-19
Identity = 58/132 (43.94%), Postives = 80/132 (60.61%), Query Frame = -3
Query:  403 RGRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 798
            RG+GI +G G + G G +GQK+R G GVR GFEGGQMPL RR+PK RG          + + VN++ +    F  G  V+ E L    +I  +G      +KILG+G L K L  +A AFS++A++K+EAAG
Sbjct:   19 RGQGIGSGMGKTAGRGHKGQKARSGGGVRPGFEGGQMPLQRRMPK-RGFTNRFK---KEIIAVNIEKLNR--FENGTTVTPEALLAARVIKKTGD----GVKILGNGNLEKSLTVQAHAFSSTARQKIEAAG 140          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_LACBA (50S ribosomal protein L15 OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=rplO PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.662e-19
Identity = 60/131 (45.80%), Postives = 78/131 (59.54%), Query Frame = -3
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRG ++G G + G G +GQK+R     R GFEGGQMPLYRRIPK     G  +    ++  VNL  +    F +G EV+   L + G++    +  K  +KILG+GELSKKL  KA  FS SA E +EAAG
Sbjct:   20 GRGDSSGNGKTAGRGQKGQKAR--SKTRLGFEGGQMPLYRRIPK----RGFTNINRKEFAVVNLSALNV--FDDGAEVTPAALVEAGIV----KNEKAGIKILGNGELSKKLTVKAAKFSKSAAEAIEAAG 138          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STAEQ (50S ribosomal protein L15 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rplO PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.782e-19
Identity = 55/131 (41.98%), Postives = 76/131 (58.02%), Query Frame = -3
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRG A G G + G G +GQK+R G  +R GFEGGQ+PL+RR+PK     G  +    +Y  VNL  +    F +G EV+   L + G++    +  K  +K+LG+G L KKL  KA  FS SA E ++A G
Sbjct:   20 GRGAATGNGKTSGRGQKGQKARSGGKLRPGFEGGQLPLFRRLPK----RGFTNINRKEYAIVNLDQLNK--FEDGTEVTPALLVESGVV----KNEKSGIKVLGNGSLDKKLTVKAHKFSASAAEAIDAKG 140          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_PSYWF (50S ribosomal protein L15 OS=Psychrobacter sp. (strain PRwf-1) GN=rplO PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.782e-19
Identity = 59/143 (41.26%), Postives = 83/143 (58.04%), Query Frame = -3
Query:  370 RGRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVLPGRKK 798
            +GRGI +G G + G G++GQKSR G GVR+GFEGGQMPL+RR+PK  G    M     +   V L ++     ++GD VS+ETLK   +I    R      +I+  GE++K   FK    +  AK  +EAAG T+ V  G ++
Sbjct:   21 KGRGIGSGLGKTGGRGVKGQKSRSGSGVRRGFEGGQMPLFRRVPKF-GFTSQMALTTAE---VRLSELNK---IDGDVVSVETLKAANII----RHDMKRARIILSGEITKAYTFKGVKVTKGAKAAIEAAGGTVEVTEGTEE 152          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_PELCD (50S ribosomal protein L15 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=rplO PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.782e-19
Identity = 59/131 (45.04%), Postives = 75/131 (57.25%), Query Frame = -3
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRG  +G G + G G +GQ +R G GV+ GFEGGQMPL RR+PK     G        Y  VNL+D++   F  G  V +E L + GL++         +KILGDG+L K L  KA  FS SA  K+EAAG
Sbjct:   20 GRGPGSGNGKTAGKGHKGQNARSGGGVKPGFEGGQMPLQRRLPK----RGFKSLNKKVYALVNLRDLQDI-FEAGSVVDIEALGQNGLVS----RIYDGIKILGDGDLDKALTVKAHKFSQSAIAKIEAAG 141          
The following BLAST results are available for this feature:
BLAST of CF835984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL15_BACC42.147e-1942.3450S ribosomal protein L15 OS=Bacillus cereus (stra... [more]
RL15_LACDB2.804e-1941.6150S ribosomal protein L15 OS=Lactobacillus delbrue... [more]
RL15_LACDA2.804e-1941.6150S ribosomal protein L15 OS=Lactobacillus delbrue... [more]
RL15_CORDI2.804e-1944.4450S ribosomal protein L15 OS=Corynebacterium dipht... [more]
RL15_STRMU3.662e-1940.8850S ribosomal protein L15 OS=Streptococcus mutans ... [more]
RL15_PELTS3.662e-1943.9450S ribosomal protein L15 OS=Pelotomaculum thermop... [more]
RL15_LACBA3.662e-1945.8050S ribosomal protein L15 OS=Lactobacillus brevis ... [more]
RL15_STAEQ4.782e-1941.9850S ribosomal protein L15 OS=Staphylococcus epider... [more]
RL15_PSYWF4.782e-1941.2650S ribosomal protein L15 OS=Psychrobacter sp. (st... [more]
RL15_PELCD4.782e-1945.0450S ribosomal protein L15 OS=Pelobacter carbinolic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02D20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835984 ID=CF835984; Name=CF835984; organism=Citrus sinensis; type=EST; length=806bp
TTTTTTTTTTTTTTTCAATCAATGGTGATCTAATCAACATAATACCTGTA
GATTTGGCTTTCCAGCTAAGTAACATGAGAATCAGAACATTGAGAGTTTA
GCTGAATTTTTAAAAGGGAGGGGATACAAAGAAGAGACAAATTCCAGAAA
TTACAGCTATAGACATCCTCCTCTCATTTCGCTACCCCGAAAACCTAAAA
CCAGAGAAAAAGAATCGAAGACAATTCAATGGCTCTACTTAGTTACAGTG
AGTGAAAAAAACCAAGTGGTTCAAGCTGAAGTTGAATCGGATGCAGCTGC
AGCAGCTCTCTTCTTGGCGAAGTATTCTTCAGCTCGTGCAAGGTTCTTAG
CTACTGATGGTTTCACCCACTTCTTTCGGCCAGGTAAGACAGTGAGGGTA
CAGCCTGCAGCTTCAAGCTTCTCCTTTGCTGATGTAGAGAAGGCACGAGC
CTTGAAGTTCAGCTTCTTGCTTAATTCTCCATCACCAAGAATCTTTAAAG
GCAGTTTCCTTTCTCTTCCTGAGGGATTGATCAAGCCCTTCTTCTTCAAA
GTCTCTAGTGAGACTTCATCCCCCTCTAGAAAACCAGCTGCTTCTATGTC
TTTCAAGTTAACAGGGACATACTTAGGTAACCCAGCATGCATACCTCCGG
CAATCCCACGGAGCTTAGGAATTCGACGATAAAGAGGCATTTGACCACCT
TCAAAACCCTTTCTAACGCCAGGACCAAACCTCGATTTCTGACCTCTCAT
TCCAAACCCACAGCTGTTACCTTGCCCAGCTGCTATTCCTCTCCCCCTTT
CTCTTC
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