CF835984

Overview
NameCF835984
Unique NameCF835984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_ANASP (50S ribosomal protein L15 OS=Anabaena sp. (strain PCC 7120) GN=rplO PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.368e-26
Identity = 70/140 (50.00%), Postives = 88/140 (62.86%), Query Frame = -3
Query:  385 RERGRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 804
            R  GRGI+AGQG S G GMRGQKSR G G R GFEGGQ PLYRRIPKL+G           Y  +N++ +  A      EV+LE+L+  G++  +    K PLKILG+G+L   LN KA AF+  A+ K+EAAG +  VL
Sbjct:   17 RRVGRGISAGQGASAGLGMRGQKSRSGSGTRPGFEGGQQPLYRRIPKLKGFP---VVNRKIYTTINVEKL--ADLPANTEVTLESLRAAGILTAA----KGPLKILGNGDLGVALNVKAAAFTGQARSKIEAAGGSCEVL 147          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_SYNJB (50S ribosomal protein L15 OS=Synechococcus sp. GN=rplO PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.093e-26
Identity = 69/140 (49.29%), Postives = 90/140 (64.29%), Query Frame = -3
Query:  385 RERGRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 804
            R  GRG++AGQG SCG GMRGQK+R G   R GFEGGQ PLYRR+PKL+      +    +Y  VNL+ +  A    G EVSLE+L ++G++  +      PLKILGDGE+S  L  +A A + SAK K+EAAG  + +L
Sbjct:   17 RRLGRGVSAGQGASCGKGMRGQKARKGGSTRPGFEGGQTPLYRRLPKLKHFP--RYRRRLEYTLVNLRAL--ADLPAGSEVSLESLMERGIVTTNDG----PLKILGDGEVSVPLTIRAAAITASAKVKVEAAGGRVEIL 148          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_SYNPX (50S ribosomal protein L15 OS=Synechococcus sp. (strain WH8102) GN=rplO PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.039e-26
Identity = 70/134 (52.24%), Postives = 89/134 (66.42%), Query Frame = -3
Query:  403 RGRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFL-EGDEVSLETLKKKGLINPSGRERKLPLKILGDGEL-SKKLNFKARAFSTSAKEKLEAAG 798
            +GRGIAAGQG SCGFGMRGQKSR G   R GFEGGQMPLYRR+PKL+      H  L       + ++ A   L +G  V+L++L K G++       K PLKILG+G+L +KKL  +A AF+ SA+ K+EAAG
Sbjct:   22 KGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFPLVNPKHFTVLNVSALNSLKDGSTVNLDSLVKDGVVT----SPKHPLKILGNGDLTAKKLTVQAAAFTASARTKIEAAG 145          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_ANAVT (50S ribosomal protein L15 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplO PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.275e-26
Identity = 69/140 (49.29%), Postives = 87/140 (62.14%), Query Frame = -3
Query:  385 RERGRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 804
            R  GRGI+AGQG S G GMRGQKSR G G R GFEGGQ PLYRRIPKL+G           Y  +N++ +  A      EV+LE+L+  G++       K PLK+LG+G+L   LN KA AF+  A+ K+EAAG +  VL
Sbjct:   17 RRVGRGISAGQGASAGLGMRGQKSRSGSGTRPGFEGGQQPLYRRIPKLKGFP---VVNRKIYTTINVEKL--ADLPANTEVTLESLRASGILTAV----KGPLKVLGNGDLGVALNVKAAAFTGQARSKIEAAGGSCEVL 147          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_PROM5 (50S ribosomal protein L15 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplO PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.998e-26
Identity = 71/139 (51.08%), Postives = 90/139 (64.75%), Query Frame = -3
Query:  385 RGRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETL-KKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 798
            +GRGIAAGQG SCGFGMRGQKSR G   R GFEGGQMPLYRR+PKL+            Y  VNL  +  + F + + V++++L KKK L  P     K PLKILG+G +  KL  +A AF+  A+EK+E+AG +  VL
Sbjct:   21 KGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLKHFE---IINQKNYSIVNLSKL--SEFKDNEIVNIDSLVKKKLLFKP-----KFPLKILGNGVVKVKLKVQAHAFTKVAQEKIESAGGSCEVL 149          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_SYNR3 (50S ribosomal protein L15 OS=Synechococcus sp. (strain RCC307) GN=rplO PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.175e-25
Identity = 68/132 (51.52%), Postives = 84/132 (63.64%), Query Frame = -3
Query:  403 RGRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 798
            +GRGIAAGQG SCGFGMRGQKSR G   R GFEGGQMPLYRR+PKL+           ++  VN+   E A    G  V+ ++L + G++       K  LK+LGDGEL  KL   A AF+ SA+EK+EAAG
Sbjct:   21 KGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLKHFT---LVNPKRFTVVNVG--ELAELKAGTVVTRDSLTEAGILT----SPKHALKVLGDGELKVKLTVHAAAFTASAREKIEAAG 143          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_PROMT (50S ribosomal protein L15 OS=Prochlorococcus marinus (strain NATL2A) GN=rplO PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.005e-25
Identity = 66/132 (50.00%), Postives = 85/132 (64.39%), Query Frame = -3
Query:  403 RGRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 798
            +GRGIAAGQG SCGFGMRGQKSR G   R GFEGGQMPLYRR+PKL+            +  +N+  + A    +G  V+L+ L K+G++     + K PLKILG+G+L  KL  +A AF+ SAK K+E  G
Sbjct:   21 KGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLKHFP---IVNQKNFTVLNVSRLNA--LKDGTIVNLDLLVKEGILT----KPKNPLKILGNGKLEVKLTVQAAAFTASAKNKIEEVG 143          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_PROM1 (50S ribosomal protein L15 OS=Prochlorococcus marinus (strain NATL1A) GN=rplO PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.005e-25
Identity = 66/132 (50.00%), Postives = 85/132 (64.39%), Query Frame = -3
Query:  403 RGRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 798
            +GRGIAAGQG SCGFGMRGQKSR G   R GFEGGQMPLYRR+PKL+            +  +N+  + A    +G  V+L+ L K+G++     + K PLKILG+G L  KL  +A AF+ SAK+K+E  G
Sbjct:   21 KGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLKHFP---IVNQKNFTVLNVSRLNA--LKDGTIVNLDLLVKEGILT----KPKNPLKILGNGNLEVKLTVQAAAFTASAKKKIEEVG 143          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_TRIEI (50S ribosomal protein L15 OS=Trichodesmium erythraeum (strain IMS101) GN=rplO PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.697e-24
Identity = 67/134 (50.00%), Postives = 82/134 (61.19%), Query Frame = -3
Query:  403 RERGRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 804
            R  GRGI+AGQG SCG GMRGQKSR G   R GFEGGQ PLYRR+PKL+G          KY  +N+  +  +      EV+L +L K G+I         PLKILGDG+L+  L   A AF+ SA+ K+EAAG
Sbjct:   17 RRVGRGISAGQGASCGKGMRGQKSRSGGSTRPGFEGGQNPLYRRLPKLKGFP---MVNRKKYTIINVSKL--SSLPANTEVTLASLIKVGIITTDDG----PLKILGDGDLNIPLKVYAAAFTASARSKIEAAG 141          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_NOSP7 (50S ribosomal protein L15 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplO PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.697e-24
Identity = 67/136 (49.26%), Postives = 85/136 (62.50%), Query Frame = -3
Query:  385 RGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 792
            RGI+AGQG S G GMRGQKSR G G R GFEGGQ PLYRR+PKL+G           Y  +N++ +  A      EV+L +LK  G++       K PLKILG+GELS  L  +A AF+ +A+ K+EAAG +  VL
Sbjct:   21 RGISAGQGASAGLGMRGQKSRSGSGTRPGFEGGQQPLYRRLPKLKGFP---IVNQKIYTTINVEKL--ASLPANTEVTLASLKAAGILTAV----KGPLKILGNGELSTPLKVQAAAFTGTARSKIEAAGGSCEVL 147          
The following BLAST results are available for this feature:
BLAST of CF835984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL15_ANASP2.368e-2650.0050S ribosomal protein L15 OS=Anabaena sp. (strain ... [more]
RL15_SYNJB3.093e-2649.2950S ribosomal protein L15 OS=Synechococcus sp. GN=... [more]
RL15_SYNPX4.039e-2652.2450S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_ANAVT5.275e-2649.2950S ribosomal protein L15 OS=Anabaena variabilis (... [more]
RL15_PROM58.998e-2651.0850S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_SYNR31.175e-2551.5250S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_PROMT2.005e-2550.0050S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_PROM12.005e-2550.0050S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_TRIEI1.697e-2450.0050S ribosomal protein L15 OS=Trichodesmium erythra... [more]
RL15_NOSP71.697e-2449.2650S ribosomal protein L15 OS=Nostoc punctiforme (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02D20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835984 ID=CF835984; Name=CF835984; organism=Citrus sinensis; type=EST; length=806bp
TTTTTTTTTTTTTTTCAATCAATGGTGATCTAATCAACATAATACCTGTA
GATTTGGCTTTCCAGCTAAGTAACATGAGAATCAGAACATTGAGAGTTTA
GCTGAATTTTTAAAAGGGAGGGGATACAAAGAAGAGACAAATTCCAGAAA
TTACAGCTATAGACATCCTCCTCTCATTTCGCTACCCCGAAAACCTAAAA
CCAGAGAAAAAGAATCGAAGACAATTCAATGGCTCTACTTAGTTACAGTG
AGTGAAAAAAACCAAGTGGTTCAAGCTGAAGTTGAATCGGATGCAGCTGC
AGCAGCTCTCTTCTTGGCGAAGTATTCTTCAGCTCGTGCAAGGTTCTTAG
CTACTGATGGTTTCACCCACTTCTTTCGGCCAGGTAAGACAGTGAGGGTA
CAGCCTGCAGCTTCAAGCTTCTCCTTTGCTGATGTAGAGAAGGCACGAGC
CTTGAAGTTCAGCTTCTTGCTTAATTCTCCATCACCAAGAATCTTTAAAG
GCAGTTTCCTTTCTCTTCCTGAGGGATTGATCAAGCCCTTCTTCTTCAAA
GTCTCTAGTGAGACTTCATCCCCCTCTAGAAAACCAGCTGCTTCTATGTC
TTTCAAGTTAACAGGGACATACTTAGGTAACCCAGCATGCATACCTCCGG
CAATCCCACGGAGCTTAGGAATTCGACGATAAAGAGGCATTTGACCACCT
TCAAAACCCTTTCTAACGCCAGGACCAAACCTCGATTTCTGACCTCTCAT
TCCAAACCCACAGCTGTTACCTTGCCCAGCTGCTATTCCTCTCCCCCTTT
CTCTTC
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