CF835984

Overview
NameCF835984
Unique NameCF835984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_CYAA5 (50S ribosomal protein L15 OS=Cyanothece sp. (strain ATCC 51142) GN=rplO PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.938e-24
Identity = 66/136 (48.53%), Postives = 86/136 (63.24%), Query Frame = -3
Query:  403 RERGRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLR--GIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 804
            R  GRGI+AGQG S GFGMRGQKSR G G + GFEGGQMPLYRR+PKL+   +    H     Y  +N+  + +       EV+LE+L + GLI  +      PLK+LG+GEL+  L  +A  F+ SAK K+E+AG
Sbjct:   17 RRIGRGISAGQGASGGFGMRGQKSRSGTGTKAGFEGGQMPLYRRVPKLKHFPLVNPSH-----YTIINVGKLNSLS--PNTEVTLESLMEVGLITSNDG----PLKVLGNGELTVPLTVRAPKFTASAKAKIESAG 141          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_THEEB (50S ribosomal protein L15 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplO PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.422e-24
Identity = 68/137 (49.64%), Postives = 85/137 (62.04%), Query Frame = -3
Query:  403 RERGRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPK---YVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 804
            R  GRGIAAGQG S GFGMRGQKSR G   R GFEGGQ PLYRR+PKL+      H  L K   Y  +N+  +          V++++L + G++  +    K PLK+LGDGEL+ KL   A AFS SA+ K+EAAG
Sbjct:   17 RRIGRGIAAGQGASGGFGMRGQKSRSGRPTRPGFEGGQNPLYRRLPKLK------HFPLVKRKVYTTINVGRLNT--LPANSVVTVQSLLEAGILTTA----KYPLKVLGDGELNVKLEVHAAAFSGSARSKIEAAG 141          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_ACAM1 (50S ribosomal protein L15 OS=Acaryochloris marina (strain MBIC 11017) GN=rplO PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.437e-23
Identity = 67/137 (48.91%), Postives = 85/137 (62.04%), Query Frame = -3
Query:  403 RERGRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVN---LKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 804
            R  GRGIAAGQG SCGFGMRGQKSR G   R GFEGGQ PLYRR+PKL+           +Y  +N   L +++A       +V+LE+L  +G+I  +      PLK+LGDGEL+  LN +A A + SA  K+E AG
Sbjct:   17 RRVGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQNPLYRRVPKLKHFT---LINQKQYTTINVGKLNELKAK-----SDVTLESLMAEGIITSNDG----PLKVLGDGELTVALNVQAAAATQSAIAKVEGAG 141          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_SYNY3 (50S ribosomal protein L15 OS=Synechocystis sp. (strain PCC 6803) GN=rplO PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.876e-23
Identity = 66/137 (48.18%), Postives = 84/137 (61.31%), Query Frame = -3
Query:  403 RERGRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDI---EAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 804
            R  GRGIAAGQG SCGFGMRGQKSR G G + GFEGGQMPLYRR+PKL+          P Y P +   +   + AG      V+LE+L + G++  +      PLK+LG+GEL+  L   A   S +A+ K+EAAG
Sbjct:   17 RRVGRGIAAGQGASCGFGMRGQKSRSGTGTKAGFEGGQMPLYRRLPKLK--------HFPLYNPKHFTVVNVGKLAGLAPNTVVTLESLMEAGIVTSNDG----PLKVLGNGELAVALTVHAPC-SKAAQAKIEAAG 140          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_GLOVI (50S ribosomal protein L15 OS=Gloeobacter violaceus GN=rplO PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.876e-23
Identity = 65/136 (47.79%), Postives = 81/136 (59.56%), Query Frame = -3
Query:  388 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTV 795
            GRG +AGQG + G GMRGQK R G GVR GFEGGQ+PLY R+PKL+G           Y  VNLK +         EV++ETL   G++  +      PL++LGDGE    L   A  F+ SA+EK+EAAG T TV
Sbjct:   23 GRGHSAGQGKTSGRGMRGQKCRSGGGVRPGFEGGQIPLYMRLPKLKGFE---LVNPSSYTIVNLKQLR--DLPADSEVNIETLLDAGILTATSG----PLRVLGDGEAHVALQITAAYFTASAREKIEAAGGTCTV 149          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_BACSU (50S ribosomal protein L15 OS=Bacillus subtilis GN=rplO PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.876e-23
Identity = 65/137 (47.45%), Postives = 85/137 (62.04%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRGI +G G + G G +GQ +R G GVR GFEGGQMPL++R+PK     G  +    +Y  VNL  +   GF EG EV+ E L + G+I+    +    +KILG+G+L KKL  KA  FS SAKE +EAAG T  V+
Sbjct:   20 GRGIGSGNGKTAGKGHKGQNARSGGGVRPGFEGGQMPLFQRLPK----RGFTNINRKEYAVVNLDKLN--GFAEGTEVTPELLLETGVIS----KLNAGVKILGNGKLEKKLTVKANKFSASAKEAVEAAGGTAEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_BACLD (50S ribosomal protein L15 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rplO PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.200e-23
Identity = 64/137 (46.72%), Postives = 86/137 (62.77%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRGI +G G + G G +GQ +R G GVR GFEGGQMPL++R+PK     G  +    ++  VNL  + +  F EG EV+ E L + G+I+    + K  +KILGDG+L KKL  KA  FS SAK+ +EAAG T  V+
Sbjct:   20 GRGIGSGNGKTAGKGHKGQNARSGGGVRPGFEGGQMPLFQRLPK----RGFTNINRKEFAVVNLDKLNS--FAEGTEVTPELLLETGVIS----KLKSGVKILGDGKLEKKLTVKANKFSASAKQAIEAAGGTAEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_ANOFW (50S ribosomal protein L15 OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=rplO PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.459e-23
Identity = 64/137 (46.72%), Postives = 86/137 (62.77%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRGI +G G + G G +GQ +R G GVR GFEGGQ PL+RR+PK     G  +    +Y  VNL+ +    F +G EV+ E L + G+++    + K  +K+LGDGEL+KKL  KA  FS SAKE +EAAG T  V+
Sbjct:   20 GRGIGSGNGKTSGKGHKGQNARSGGGVRIGFEGGQTPLFRRLPK----RGFTNIHRKEYAIVNLEALNR--FEDGTEVTPELLLETGVVS----KLKAGIKVLGDGELTKKLTVKAHKFSASAKEAIEAAGGTTEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_FINM2 (50S ribosomal protein L15 OS=Finegoldia magna (strain ATCC 29328) GN=rplO PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.312e-23
Identity = 60/137 (43.80%), Postives = 85/137 (62.04%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG  +G G++ G G  GQ SR G GVR GFEGGQMPL+RR+PK     G  +    +Y  +N++D+    F +G+E++ E L   G   P+  + K  +KILGDGE++KKL  KA  F+ SA+EK+  AG  + V+
Sbjct:   21 GRGYGSGLGHNAGRGRDGQNSRSGGGVRPGFEGGQMPLFRRLPK----RGFKNHFAKQYAEINIRDLNC--FEDGEEITPEILANAGFFKPA--KAKDGVKILGDGEITKKLTIKANKFTKSAEEKITKAGGKVEVI 149          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_BACA2 (50S ribosomal protein L15 OS=Bacillus amyloliquefaciens (strain FZB42) GN=rplO PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.312e-23
Identity = 64/137 (46.72%), Postives = 84/137 (61.31%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRGI +G G + G G +GQ +R G GVR GFEGGQMPL++R+PK     G  +     Y  VN+  +   GF EG EV+ E L + G+I+    +    +KILG+G+L KKL  KA  FS SAKE +EAAG T  V+
Sbjct:   20 GRGIGSGNGKTAGKGHKGQNARSGGGVRPGFEGGQMPLFQRLPK----RGFTNINRKDYAIVNVDKLN--GFAEGTEVTPELLLETGVIS----KLNAGVKILGNGKLEKKLTVKANKFSASAKEAVEAAGGTAEVI 146          
The following BLAST results are available for this feature:
BLAST of CF835984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL15_CYAA54.938e-2448.5350S ribosomal protein L15 OS=Cyanothece sp. (strai... [more]
RL15_THEEB8.422e-2449.6450S ribosomal protein L15 OS=Thermosynechococcus e... [more]
RL15_ACAM11.437e-2348.9150S ribosomal protein L15 OS=Acaryochloris marina ... [more]
RL15_SYNY31.876e-2348.1850S ribosomal protein L15 OS=Synechocystis sp. (st... [more]
RL15_GLOVI1.876e-2347.7950S ribosomal protein L15 OS=Gloeobacter violaceus... [more]
RL15_BACSU1.876e-2347.4550S ribosomal protein L15 OS=Bacillus subtilis GN=... [more]
RL15_BACLD3.200e-2346.7250S ribosomal protein L15 OS=Bacillus licheniformi... [more]
RL15_ANOFW5.459e-2346.7250S ribosomal protein L15 OS=Anoxybacillus flavith... [more]
RL15_FINM29.312e-2343.8050S ribosomal protein L15 OS=Finegoldia magna (str... [more]
RL15_BACA29.312e-2346.7250S ribosomal protein L15 OS=Bacillus amyloliquefa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02D20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835984 ID=CF835984; Name=CF835984; organism=Citrus sinensis; type=EST; length=806bp
TTTTTTTTTTTTTTTCAATCAATGGTGATCTAATCAACATAATACCTGTA
GATTTGGCTTTCCAGCTAAGTAACATGAGAATCAGAACATTGAGAGTTTA
GCTGAATTTTTAAAAGGGAGGGGATACAAAGAAGAGACAAATTCCAGAAA
TTACAGCTATAGACATCCTCCTCTCATTTCGCTACCCCGAAAACCTAAAA
CCAGAGAAAAAGAATCGAAGACAATTCAATGGCTCTACTTAGTTACAGTG
AGTGAAAAAAACCAAGTGGTTCAAGCTGAAGTTGAATCGGATGCAGCTGC
AGCAGCTCTCTTCTTGGCGAAGTATTCTTCAGCTCGTGCAAGGTTCTTAG
CTACTGATGGTTTCACCCACTTCTTTCGGCCAGGTAAGACAGTGAGGGTA
CAGCCTGCAGCTTCAAGCTTCTCCTTTGCTGATGTAGAGAAGGCACGAGC
CTTGAAGTTCAGCTTCTTGCTTAATTCTCCATCACCAAGAATCTTTAAAG
GCAGTTTCCTTTCTCTTCCTGAGGGATTGATCAAGCCCTTCTTCTTCAAA
GTCTCTAGTGAGACTTCATCCCCCTCTAGAAAACCAGCTGCTTCTATGTC
TTTCAAGTTAACAGGGACATACTTAGGTAACCCAGCATGCATACCTCCGG
CAATCCCACGGAGCTTAGGAATTCGACGATAAAGAGGCATTTGACCACCT
TCAAAACCCTTTCTAACGCCAGGACCAAACCTCGATTTCTGACCTCTCAT
TCCAAACCCACAGCTGTTACCTTGCCCAGCTGCTATTCCTCTCCCCCTTT
CTCTTC
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