CF835984

Overview
NameCF835984
Unique NameCF835984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_ENTFA (50S ribosomal protein L15 OS=Enterococcus faecalis GN=rplO PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.588e-22
Identity = 61/137 (44.53%), Postives = 84/137 (61.31%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG ++G G + G G +GQK+R G GVR GFEGGQ PL+RR+PK     G  +     Y  VNL  +    F +G EV+   LK+ G++    +  K  +K+L DGEL+KKL  KA  FS SA+E +EAAG ++ V+
Sbjct:   20 GRGTSSGNGKTAGRGQKGQKARSGGGVRLGFEGGQTPLFRRLPK----RGFTNINRKDYAVVNLDTLNR--FEDGTEVTPVVLKEAGIV----KNEKAGIKVLADGELTKKLTVKAAKFSKSAQEAIEAAGGSIEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_GEOTN (50S ribosomal protein L15 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rplO PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.074e-22
Identity = 63/131 (48.09%), Postives = 82/131 (62.60%), Query Frame = -3
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRGI +G G + G G +GQK+R G GVR GFEGGQ PL+RR+PK     G  +    +Y  VNL  +    F +G EV+ E L +KG+I+    + K  +KILG G++ KKL  KA  FS SAKE +EAAG
Sbjct:   20 GRGIGSGNGKTAGRGHKGQKARSGGGVRLGFEGGQTPLFRRLPK----RGFTNINRKEYAVVNLDRLNI--FEDGTEVTPELLLEKGVIS----KLKSGVKILGKGQIEKKLTVKAHKFSASAKEAIEAAG 140          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_BACP2 (50S ribosomal protein L15 OS=Bacillus pumilus (strain SAFR-032) GN=rplO PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.074e-22
Identity = 64/137 (46.72%), Postives = 84/137 (61.31%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRGI +G G + G G +GQ +R G GVR GFEGGQMPL++R+PK     G  +     Y  +NL  + +  F EG EV+ E L + G I+    + K  +KILG+G+L KKL  KA  FS SAKE +EAAG T  V+
Sbjct:   20 GRGIGSGNGKTSGKGHKGQNARSGGGVRPGFEGGQMPLFQRLPK----RGFTNINRKDYAVINLDRLNS--FDEGTEVTPELLLETGAIS----KLKAGVKILGNGKLEKKLTVKANKFSASAKEAIEAAGGTAEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_THETN (50S ribosomal protein L15 OS=Thermoanaerobacter tengcongensis GN=rplO PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.539e-22
Identity = 64/131 (48.85%), Postives = 83/131 (63.36%), Query Frame = -3
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRGI +G G + G G +GQ +R G GVR GFEGGQMPL RRIPK     G  +    +Y  VN+  +E   F +G E++ E L +KG+I    ++ K  +KILGDGEL+KKL  KA  FS SA EK++A G
Sbjct:   20 GRGIGSGHGKTSGRGHKGQNARSGGGVRPGFEGGQMPLTRRIPK----RGFTNIFKKEYAIVNVGTLEER-FEDGAEITPEVLIEKGII----KDVKDGVKILGDGELTKKLTVKAHKFSQSAVEKIQAVG 141          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_MACCJ (50S ribosomal protein L15 OS=Macrococcus caseolyticus (strain JCSC5402) GN=rplO PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.539e-22
Identity = 61/137 (44.53%), Postives = 84/137 (61.31%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG+A+G G + G G +GQK+R G GVR GFEGGQ+PL+RR+PK     G  +     Y  VNL  +    F +G E++  +L + G+++      K  +K+LG+GELSKKL  KA  FS SAKE +E  G T  V+
Sbjct:   20 GRGMASGNGKTSGRGHKGQKARSGGGVRLGFEGGQLPLFRRLPK----RGFTNINRKDYAIVNLDQLNR--FEDGTEITPASLIETGVVS----NEKSGIKVLGNGELSKKLTVKAHKFSASAKEAIEGKGGTTEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STRS7 (50S ribosomal protein L15 OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=rplO PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.883e-22
Identity = 62/137 (45.26%), Postives = 84/137 (61.31%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG ++G G + G G +GQK+R G GVR GFEGGQ PL+RRIPK     G  +    +Y  VNL  + A  F +G EV+   LK+ G++    R  K  +KILG+GEL+KKL  KA  FS SA+  + A G ++ V+
Sbjct:   20 GRGTSSGNGKTSGRGQKGQKARSGGGVRLGFEGGQTPLFRRIPK----RGFTNINTKEYALVNLDQLNA--FEDGTEVTPVVLKEAGIV----RAEKSGVKILGNGELTKKLTVKAAKFSKSAEAAITAKGGSIEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STREM (50S ribosomal protein L15 OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=rplO PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.883e-22
Identity = 62/137 (45.26%), Postives = 84/137 (61.31%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG ++G G + G G +GQK+R G GVR GFEGGQ PL+RRIPK     G  +    +Y  VNL  + A  F +G EV+   LK+ G++    R  K  +KILG+GEL+KKL  KA  FS SA+  + A G ++ V+
Sbjct:   20 GRGTSSGNGKTSGRGQKGQKARSGGGVRLGFEGGQTPLFRRIPK----RGFTNINTKEYALVNLDQLNA--FEDGTEVTPVVLKEAGIV----RAEKSGVKILGNGELTKKLTVKAAKFSKSAEAAITAKGGSIEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STRE4 (50S ribosomal protein L15 OS=Streptococcus equi subsp. equi (strain 4047) GN=rplO PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.883e-22
Identity = 62/137 (45.26%), Postives = 84/137 (61.31%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG ++G G + G G +GQK+R G GVR GFEGGQ PL+RRIPK     G  +    +Y  VNL  + A  F +G EV+   LK+ G++    R  K  +KILG+GEL+KKL  KA  FS SA+  + A G ++ V+
Sbjct:   20 GRGTSSGNGKTSGRGQKGQKARSGGGVRLGFEGGQTPLFRRIPK----RGFTNINTKEYALVNLDQLNA--FEDGTEVTPVVLKEAGIV----RAEKSGVKILGNGELTKKLTVKAAKFSKSAEAAITAKGGSIEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_RUBXD (50S ribosomal protein L15 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=rplO PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.345e-21
Identity = 61/139 (43.88%), Postives = 86/139 (61.87%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHA-GLPK-YVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG  +G G + G G +G K+R G      +EGGQMPL RR+P+L+G A G H    PK Y PVN+ ++ A   +EGD + L+ L+  GLI    ++    +KILGDGE+ + +  +A AFS +A+EK+EAAG    VL
Sbjct:   20 GRGEGSGYGKTSGRGQKGAKARSGTKAYTTYEGGQMPLQRRLPRLKGEARGRHTPAHPKVYDPVNVGELAA---VEGDTIGLDELRAAGLIR---KKADTLVKILGDGEIDRPVTVRAHAFSRAAREKIEAAGGRAEVL 152          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_GEOKA (50S ribosomal protein L15 OS=Geobacillus kaustophilus GN=rplO PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.345e-21
Identity = 61/131 (46.56%), Postives = 81/131 (61.83%), Query Frame = -3
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRGI +G G + G G +GQ +R G GVR GFEGGQ PL+RR+PK     G  +    +Y  VNL+ +    F +G EV+ E L + G+I+    + K  +KILG G++ KKL  KA  FS SAKE +EAAG
Sbjct:   20 GRGIGSGNGKTSGRGQKGQNARSGGGVRLGFEGGQTPLFRRLPK----RGFTNINRKEYAVVNLEKLNR--FEDGTEVTPELLLETGVIS----KLKSGVKILGKGQIEKKLTVKAHKFSASAKEAIEAAG 140          
The following BLAST results are available for this feature:
BLAST of CF835984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL15_ENTFA1.588e-2244.5350S ribosomal protein L15 OS=Enterococcus faecalis... [more]
RL15_GEOTN2.074e-2248.0950S ribosomal protein L15 OS=Geobacillus thermoden... [more]
RL15_BACP22.074e-2246.7250S ribosomal protein L15 OS=Bacillus pumilus (str... [more]
RL15_THETN3.539e-2248.8550S ribosomal protein L15 OS=Thermoanaerobacter te... [more]
RL15_MACCJ3.539e-2244.5350S ribosomal protein L15 OS=Macrococcus caseolyti... [more]
RL15_STRS77.883e-2245.2650S ribosomal protein L15 OS=Streptococcus equi su... [more]
RL15_STREM7.883e-2245.2650S ribosomal protein L15 OS=Streptococcus equi su... [more]
RL15_STRE47.883e-2245.2650S ribosomal protein L15 OS=Streptococcus equi su... [more]
RL15_RUBXD1.345e-2143.8850S ribosomal protein L15 OS=Rubrobacter xylanophi... [more]
RL15_GEOKA1.345e-2146.5650S ribosomal protein L15 OS=Geobacillus kaustophi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02D20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835984 ID=CF835984; Name=CF835984; organism=Citrus sinensis; type=EST; length=806bp
TTTTTTTTTTTTTTTCAATCAATGGTGATCTAATCAACATAATACCTGTA
GATTTGGCTTTCCAGCTAAGTAACATGAGAATCAGAACATTGAGAGTTTA
GCTGAATTTTTAAAAGGGAGGGGATACAAAGAAGAGACAAATTCCAGAAA
TTACAGCTATAGACATCCTCCTCTCATTTCGCTACCCCGAAAACCTAAAA
CCAGAGAAAAAGAATCGAAGACAATTCAATGGCTCTACTTAGTTACAGTG
AGTGAAAAAAACCAAGTGGTTCAAGCTGAAGTTGAATCGGATGCAGCTGC
AGCAGCTCTCTTCTTGGCGAAGTATTCTTCAGCTCGTGCAAGGTTCTTAG
CTACTGATGGTTTCACCCACTTCTTTCGGCCAGGTAAGACAGTGAGGGTA
CAGCCTGCAGCTTCAAGCTTCTCCTTTGCTGATGTAGAGAAGGCACGAGC
CTTGAAGTTCAGCTTCTTGCTTAATTCTCCATCACCAAGAATCTTTAAAG
GCAGTTTCCTTTCTCTTCCTGAGGGATTGATCAAGCCCTTCTTCTTCAAA
GTCTCTAGTGAGACTTCATCCCCCTCTAGAAAACCAGCTGCTTCTATGTC
TTTCAAGTTAACAGGGACATACTTAGGTAACCCAGCATGCATACCTCCGG
CAATCCCACGGAGCTTAGGAATTCGACGATAAAGAGGCATTTGACCACCT
TCAAAACCCTTTCTAACGCCAGGACCAAACCTCGATTTCTGACCTCTCAT
TCCAAACCCACAGCTGTTACCTTGCCCAGCTGCTATTCCTCTCCCCCTTT
CTCTTC
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