CF835984

Overview
NameCF835984
Unique NameCF835984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_BRASO (50S ribosomal protein L15 OS=Bradyrhizobium sp. (strain ORS278) GN=rplO PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.716e-14
Identity = 54/145 (37.24%), Postives = 80/145 (55.17%), Query Frame = -3
Query:  373 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNL----KDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVLPGRK 795
            GRGI +G+G + G G +GQ +R G  + KGFEGGQMP++RR+PK     G  +     +V +NL    + I+A     G  ++ E+L K G +    R  K  +++LG GEL  K+N +    S SA   +E AG T+ +L   K
Sbjct:   20 GRGIGSGKGKTSGRGGKGQTARSGVRI-KGFEGGQMPMHRRLPK----RGFNNIFALDFVEINLDRIQQAIDAKKLDAGSVINAESLVKSGAL----RRSKDGVRLLGRGELKAKINIEVYGASKSAIAAVEKAGGTVKILAPAK 155          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_MYCPA (50S ribosomal protein L15 OS=Mycobacterium paratuberculosis GN=rplO PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.547e-14
Identity = 53/137 (38.69%), Postives = 76/137 (55.47%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG    +G + G G +G K+R    V   FEGGQMP++ R+PKL+G          +Y  VN+ DI    F +G  V ++ L  KG +      R   +K+LGDG+L+ K+   A  FS SA+EK+ AAG ++T L
Sbjct:   22 GRG-EGSKGKTAGRGTKGTKAR--KNVPVTFEGGQMPIHMRLPKLKGFRNRFRT---EYEIVNVGDINRL-FPQGGSVGVDELVAKGAVR-----RNSLVKVLGDGKLTVKVEVSAHKFSGSAREKITAAGGSVTEL 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_MYCA1 (50S ribosomal protein L15 OS=Mycobacterium avium (strain 104) GN=rplO PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.547e-14
Identity = 53/137 (38.69%), Postives = 76/137 (55.47%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG    +G + G G +G K+R    V   FEGGQMP++ R+PKL+G          +Y  VN+ DI    F +G  V ++ L  KG +      R   +K+LGDG+L+ K+   A  FS SA+EK+ AAG ++T L
Sbjct:   22 GRG-EGSKGKTAGRGTKGTKAR--KNVPVTFEGGQMPIHMRLPKLKGFRNRFRT---EYEIVNVGDINRL-FPQGGSVGVDELVAKGAVR-----RNSLVKVLGDGKLTVKVEVSAHKFSGSAREKITAAGGSVTEL 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_GRAFK (50S ribosomal protein L15 OS=Gramella forsetii (strain KT0803) GN=rplO PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.547e-14
Identity = 55/140 (39.29%), Postives = 76/140 (54.29%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVN---LKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG  +G+G +   G +G KSR G   + GFEGGQMPL RR+PK     G  +     Y  +N   L+++   G ++ D V ++ L + GL   +GR     +KILG GEL  KL      F+ SAKE +EAAG  +  L
Sbjct:   21 GRGEGSGKGGTATRGHKGAKSRSGYSKKIGFEGGQMPLQRRVPKF----GFTNRNRKVYQGINLDTLQNLVDEGRIK-DTVDMDVLVENGL---AGRNEL--VKILGRGELKAKLKISVHKFTASAKEAIEAAGGEVVTL 150          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_FRASC (50S ribosomal protein L15 OS=Frankia sp. (strain CcI3) GN=rplO PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.547e-14
Identity = 53/135 (39.26%), Postives = 77/135 (57.04%), Query Frame = -3
Query:  391 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLT 795
            GRG    +G + G G +G K+R     R  FEGGQMPL+ R+PKL+G          +Y  VN+  + A  F +G EV+   L  +G +       K P+K+LG+G+++  L+  A AFS SAKEK+ AAG ++T
Sbjct:   35 GRG-EGSKGKTAGRGTKGSKARKQVPAR--FEGGQMPLHMRLPKLKGFRNRFRV---EYQVVNVATL-AELFPQGGEVTKADLAARGAVRG-----KSPVKVLGNGDINVALHVSADAFSASAKEKIAAAGGSVT 157          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_BURXL (50S ribosomal protein L15 OS=Burkholderia xenovorans (strain LB400) GN=rplO PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.547e-14
Identity = 55/135 (40.74%), Postives = 73/135 (54.07%), Query Frame = -3
Query:  403 RERGRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYV-PVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 804
            R  GRGI +G G + G G +GQKSR G   + GFEGGQMPL RR+PK      G  +   ++V  V L D+E    L  DE+ L  LK+ GL+     E     KI+  GEL +K+  K    +  A+  +EAAG
Sbjct:   17 RRVGRGIGSGLGKTAGRGHKGQKSRSGGFHKVGFEGGQMPLQRRLPK-----RGFTSLTKEFVGEVRLSDLEK---LPVDEIDLLALKQAGLVG----ELIKSAKIIATGELKRKVVVKGLGATKGARAAIEAAG 139          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_BUCAK (50S ribosomal protein L15 OS=Buchnera aphidicola subsp. Acyrthosiphon kondoi GN=rplO PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.547e-14
Identity = 49/131 (37.40%), Postives = 74/131 (56.49%), Query Frame = -3
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRGI +G G + G G +GQKSR G GVR+GFEGGQ+PLYRR+PK     G           V L ++     +EGD + L TLK   ++   G + +  +K++  GE+++ +  +    +  A+  +EAAG
Sbjct:   20 GRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQIPLYRRLPKF----GFTSRKAMITAEVRLSEL---ALVEGDVIDLNTLKAANVV---GIQIEF-VKVILSGEVARPVTLRGLRVTKGARAAIEAAG 139          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_ACICJ (50S ribosomal protein L15 OS=Acidiphilium cryptum (strain JF-5) GN=rplO PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.547e-14
Identity = 50/144 (34.72%), Postives = 80/144 (55.56%), Query Frame = -3
Query:  376 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKD----IEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVLPGR 795
            GRGI +G+G + G G++GQK+R G  +  GFEGGQ+P+YRR+PK     G  +     Y P+N+      IE+     G +++  TL+  G+   S   +   +++LG GE+S+K+  +    S SA   +E AG ++T    R
Sbjct:   20 GRGIGSGKGKTSGKGVKGQKAREGVSLN-GFEGGQLPIYRRLPK----RGFNNVNRKDYAPLNVGTLAALIESGKIDAGQKITEATLRAAGVYAGS---KLAGVRLLGRGEISQKVEIEVSGASASAIAAIEQAGGSVTTTVAR 155          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_SPHWW (50S ribosomal protein L15 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rplO PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.632e-14
Identity = 58/159 (36.48%), Postives = 80/159 (50.31%), Query Frame = -3
Query:  331 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNL----KDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVLPGRKKWVKPSVAKNLARA 795
            GRGI +G G + G G +GQKSR G  +  GFEGGQMPL+ R+PK     G  +     Y  VNL    K ++A        +    LK  G+     R  K  ++ILG GEL+ K++FK    S  AK  +E AG ++ V+       K +  K  A+A
Sbjct:   20 GRGIGSGLGKTGGRGQKGQKSRSGVSIN-GFEGGQMPLHMRLPK----RGFNNIFAKDYAEVNLGAIQKLVDAKKLDTAGVIDHAALKAAGV----ARGGKDGVRILGKGELTAKVSFKVAGVSAGAKAAIEKAGGSVEVIEVVPAAEKAAAKKGTAKA 169          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_PASMU (50S ribosomal protein L15 OS=Pasteurella multocida GN=rplO PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.632e-14
Identity = 53/131 (40.46%), Postives = 71/131 (54.20%), Query Frame = -3
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRGI +G G + G G +GQKSR G GVR+GFEGGQMPLYRR+PK     G           V L D+     +EG  V+LE+LK   +I    +     +KI+  GE+   +  +    +  AK  +EAAG
Sbjct:   20 GRGIGSGLGKTGGRGHKGQKSRTGGGVRRGFEGGQMPLYRRLPKF----GFTSMKAAVTAEVRLNDLAK---VEGGVVTLESLKAANVITKDIQF----VKIILAGEVKGAVVVRGLRVTKGAKAAIEAAG 139          
The following BLAST results are available for this feature:
BLAST of CF835984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL15_BRASO2.716e-1437.2450S ribosomal protein L15 OS=Bradyrhizobium sp. (s... [more]
RL15_MYCPA3.547e-1438.6950S ribosomal protein L15 OS=Mycobacterium paratub... [more]
RL15_MYCA13.547e-1438.6950S ribosomal protein L15 OS=Mycobacterium avium (... [more]
RL15_GRAFK3.547e-1439.2950S ribosomal protein L15 OS=Gramella forsetii (st... [more]
RL15_FRASC3.547e-1439.2650S ribosomal protein L15 OS=Frankia sp. (strain C... [more]
RL15_BURXL3.547e-1440.7450S ribosomal protein L15 OS=Burkholderia xenovora... [more]
RL15_BUCAK3.547e-1437.4050S ribosomal protein L15 OS=Buchnera aphidicola s... [more]
RL15_ACICJ3.547e-1434.7250S ribosomal protein L15 OS=Acidiphilium cryptum ... [more]
RL15_SPHWW4.632e-1436.4850S ribosomal protein L15 OS=Sphingomonas wittichi... [more]
RL15_PASMU4.632e-1440.4650S ribosomal protein L15 OS=Pasteurella multocida... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02D20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835984 ID=CF835984; Name=CF835984; organism=Citrus sinensis; type=EST; length=806bp
TTTTTTTTTTTTTTTCAATCAATGGTGATCTAATCAACATAATACCTGTA
GATTTGGCTTTCCAGCTAAGTAACATGAGAATCAGAACATTGAGAGTTTA
GCTGAATTTTTAAAAGGGAGGGGATACAAAGAAGAGACAAATTCCAGAAA
TTACAGCTATAGACATCCTCCTCTCATTTCGCTACCCCGAAAACCTAAAA
CCAGAGAAAAAGAATCGAAGACAATTCAATGGCTCTACTTAGTTACAGTG
AGTGAAAAAAACCAAGTGGTTCAAGCTGAAGTTGAATCGGATGCAGCTGC
AGCAGCTCTCTTCTTGGCGAAGTATTCTTCAGCTCGTGCAAGGTTCTTAG
CTACTGATGGTTTCACCCACTTCTTTCGGCCAGGTAAGACAGTGAGGGTA
CAGCCTGCAGCTTCAAGCTTCTCCTTTGCTGATGTAGAGAAGGCACGAGC
CTTGAAGTTCAGCTTCTTGCTTAATTCTCCATCACCAAGAATCTTTAAAG
GCAGTTTCCTTTCTCTTCCTGAGGGATTGATCAAGCCCTTCTTCTTCAAA
GTCTCTAGTGAGACTTCATCCCCCTCTAGAAAACCAGCTGCTTCTATGTC
TTTCAAGTTAACAGGGACATACTTAGGTAACCCAGCATGCATACCTCCGG
CAATCCCACGGAGCTTAGGAATTCGACGATAAAGAGGCATTTGACCACCT
TCAAAACCCTTTCTAACGCCAGGACCAAACCTCGATTTCTGACCTCTCAT
TCCAAACCCACAGCTGTTACCTTGCCCAGCTGCTATTCCTCTCCCCCTTT
CTCTTC
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