CF835984

Overview
NameCF835984
Unique NameCF835984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_MYCUA (50S ribosomal protein L15 OS=Mycobacterium ulcerans (strain Agy99) GN=rplO PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.050e-14
Identity = 55/137 (40.15%), Postives = 80/137 (58.39%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG    +G + G G +G K+R    V   FEGGQMP++ R+PKL+G          +Y  VN+ DI A  F EG  V ++ L  KG +    R+  L +K+LGDG+L+ K++  A  FS SA+E++ AAG ++T L
Sbjct:   22 GRG-EGSKGKTAGRGTKGTKAR--KQVPTTFEGGQMPIHMRLPKLKGFRNRFRT---EYEIVNVGDI-ARLFPEGGTVGVDELVAKGAV----RKNSL-VKVLGDGKLTVKVDITAHKFSGSAREQITAAGGSVTEL 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_MANSM (50S ribosomal protein L15 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rplO PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.050e-14
Identity = 51/131 (38.93%), Postives = 70/131 (53.44%), Query Frame = -3
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRGI +G G + G G +GQKSR G GVR+GFEGGQMPLYRR+PK     G           + L D+     +E + V+LE+LK   +I    +  K+ L     GE+   +  +    +  AK  +EAAG
Sbjct:   20 GRGIGSGLGKTGGRGHKGQKSRTGGGVRRGFEGGQMPLYRRLPKF----GFTSMKAAVTAEIRLNDLTK---VENNVVTLESLKAANIITKDIQFAKVVLA----GEVKGAVTVRGLRVTKGAKAAIEAAG 139          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_BRASB (50S ribosomal protein L15 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rplO PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.050e-14
Identity = 53/145 (36.55%), Postives = 80/145 (55.17%), Query Frame = -3
Query:  373 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNL----KDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVLPGRK 795
            GRGI +G+G + G G +GQ +R G  + KGFEGGQMP++RR+PK     G  +     +V +NL    + I+A     G  ++ E L K G +    R  K  +++LG GE++ K+N +    S SA   +E AG T+ +L   K
Sbjct:   20 GRGIGSGKGKTSGRGGKGQTARSGVRI-KGFEGGQMPMHRRLPK----RGFNNIFALDFVEINLDRIQQAIDAKKLDAGSVINAEALVKSGAL----RRAKDGVRLLGRGEITAKVNIEVHGASKSAIAAVEKAGGTVKLLAPAK 155          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_BIFLO (50S ribosomal protein L15 OS=Bifidobacterium longum GN=rplO PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.050e-14
Identity = 52/131 (39.69%), Postives = 70/131 (53.44%), Query Frame = -3
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRG    +G + G G +GQ  R    VR GFEGGQ+PLY R+PKLRG          ++  +N+  +    F EG EV++  L  KG +  +      P+K+LGDGE +     K    S SAK K+EAAG
Sbjct:   26 GRG-EGSKGKTSGRGAKGQTKR--NHVRPGFEGGQLPLYMRLPKLRGFKNPFKV---EFQVINIARLVEL-FPEGGEVAVADLIAKGAVRDNA-----PVKVLGDGETTVAFTLKGVKASASAKSKIEAAG 144          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_BIFLI (50S ribosomal protein L15 OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=rplO PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.050e-14
Identity = 52/131 (39.69%), Postives = 70/131 (53.44%), Query Frame = -3
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRG    +G + G G +GQ  R    VR GFEGGQ+PLY R+PKLRG          ++  +N+  +    F EG EV++  L  KG +  +      P+K+LGDGE +     K    S SAK K+EAAG
Sbjct:   26 GRG-EGSKGKTSGRGAKGQTKR--NHVRPGFEGGQLPLYMRLPKLRGFKNPFKV---EFQVINIARLVEL-FPEGGEVAVADLIAKGAVRDNA-----PVKVLGDGETTVAFTLKGVKASASAKSKIEAAG 144          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_POLSJ (50S ribosomal protein L15 OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=rplO PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.901e-14
Identity = 53/135 (39.26%), Postives = 71/135 (52.59%), Query Frame = -3
Query:  403 RERGRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKY-VPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 804
            R  GRGI +G G + G G +GQKSR G   + GFEGGQMP+ RR+PK      G  + L K+   V L  +E  G     EV L  LK  GL+    +     +K++  GELSK +     + +  AK  +EAAG
Sbjct:   17 RRVGRGIGSGLGKTAGRGHKGQKSRAGGYHKVGFEGGQMPMQRRLPK-----RGFKSHLLKFNAEVTLSALEQLGLA---EVDLLALKTAGLVGQLAKN----VKVIKSGELSKAVKLNGISATAGAKAIIEAAG 139          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_NITWN (50S ribosomal protein L15 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rplO PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.901e-14
Identity = 52/142 (36.62%), Postives = 79/142 (55.63%), Query Frame = -3
Query:  373 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGD-EVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVLPGRK 795
            GRGI +G+G + G G +GQ +R G  +  GFEGGQMPL+RR+PK RG          +     L+D   AG ++ +  ++ E+L K G++    R  K  +++LG GE+  KL  +    S SA   +E AG T+ +L  +K
Sbjct:   20 GRGIGSGKGKTGGRGGKGQTARSGVRIN-GFEGGQMPLHRRLPK-RGFNNIFRVEFAEINLDRLQDAIDAGSIDANTTINAESLVKSGVV----RRAKGGVRLLGRGEIKAKLTVEVHGASKSAIAAVEKAGGTVKILAPKK 155          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_MYCMM (50S ribosomal protein L15 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=rplO PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.901e-14
Identity = 55/137 (40.15%), Postives = 80/137 (58.39%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG    +G + G G +G K+R    V   FEGGQMP++ R+PKL+G          +Y  VN+ DI A  F EG  V ++ L  KG +    R+  L +K+LGDG+L+ K++  A  FS SA+E++ AAG ++T L
Sbjct:   22 GRG-EGSKGKTAGRGTKGTKAR--KQVPTTFEGGQMPIHMRLPKLKGFRNRFRT---EYEIVNVGDI-ARLFPEGGTVGVDELVAKGAV----RKNSL-VKVLGDGKLTVKVDVTAHKFSGSAREQITAAGGSVTEL 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_METS4 (50S ribosomal protein L15 OS=Methylobacterium sp. (strain 4-46) GN=rplO PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.901e-14
Identity = 57/139 (41.01%), Postives = 81/139 (58.27%), Query Frame = -3
Query:  391 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAA---GFLE-GDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLT 795
            GRGI +G+G + G G++GQK+R G  + KGFEGGQMPL+RR+PK     G  + G      VN+  I+ A   G L+    V++E L   G+++   R R   +KILG GEL+  L F+    S SA   +E AG ++T
Sbjct:   20 GRGIGSGKGKTAGRGVKGQKARTGVAI-KGFEGGQMPLHRRLPK----RGFNNPGATDLNEVNVGRIQQAVDSGKLDPSAPVTVEALVAAGVVS---RVRD-GVKILGVGELTASLTFQVARASKSAVAAIEKAGGSVT 149          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_ERWT9 (50S ribosomal protein L15 OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=rplO PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.901e-14
Identity = 52/131 (39.69%), Postives = 70/131 (53.44%), Query Frame = -3
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRGI +G G + G G +GQ SR G GVR+GFEGGQMPLYRR+PK     G           V L D+     +EG  V L TLK   +I   G + +   K++  GE+S  +  +    +  A+  +EAAG
Sbjct:   20 GRGIGSGLGKTGGRGHKGQNSRSGGGVRRGFEGGQMPLYRRLPKF----GFTSRKAMVTAEVRLSDLAK---VEGGIVDLNTLKAANII---GIQMEF-AKVILSGEVSAPVTIRGLRVTKGARAAIEAAG 139          
The following BLAST results are available for this feature:
BLAST of CF835984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL15_MYCUA6.050e-1440.1550S ribosomal protein L15 OS=Mycobacterium ulceran... [more]
RL15_MANSM6.050e-1438.9350S ribosomal protein L15 OS=Mannheimia succinicip... [more]
RL15_BRASB6.050e-1436.5550S ribosomal protein L15 OS=Bradyrhizobium sp. (s... [more]
RL15_BIFLO6.050e-1439.6950S ribosomal protein L15 OS=Bifidobacterium longu... [more]
RL15_BIFLI6.050e-1439.6950S ribosomal protein L15 OS=Bifidobacterium longu... [more]
RL15_POLSJ7.901e-1439.2650S ribosomal protein L15 OS=Polaromonas sp. (stra... [more]
RL15_NITWN7.901e-1436.6250S ribosomal protein L15 OS=Nitrobacter winograds... [more]
RL15_MYCMM7.901e-1440.1550S ribosomal protein L15 OS=Mycobacterium marinum... [more]
RL15_METS47.901e-1441.0150S ribosomal protein L15 OS=Methylobacterium sp. ... [more]
RL15_ERWT97.901e-1439.6950S ribosomal protein L15 OS=Erwinia tasmaniensis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02D20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835984 ID=CF835984; Name=CF835984; organism=Citrus sinensis; type=EST; length=806bp
TTTTTTTTTTTTTTTCAATCAATGGTGATCTAATCAACATAATACCTGTA
GATTTGGCTTTCCAGCTAAGTAACATGAGAATCAGAACATTGAGAGTTTA
GCTGAATTTTTAAAAGGGAGGGGATACAAAGAAGAGACAAATTCCAGAAA
TTACAGCTATAGACATCCTCCTCTCATTTCGCTACCCCGAAAACCTAAAA
CCAGAGAAAAAGAATCGAAGACAATTCAATGGCTCTACTTAGTTACAGTG
AGTGAAAAAAACCAAGTGGTTCAAGCTGAAGTTGAATCGGATGCAGCTGC
AGCAGCTCTCTTCTTGGCGAAGTATTCTTCAGCTCGTGCAAGGTTCTTAG
CTACTGATGGTTTCACCCACTTCTTTCGGCCAGGTAAGACAGTGAGGGTA
CAGCCTGCAGCTTCAAGCTTCTCCTTTGCTGATGTAGAGAAGGCACGAGC
CTTGAAGTTCAGCTTCTTGCTTAATTCTCCATCACCAAGAATCTTTAAAG
GCAGTTTCCTTTCTCTTCCTGAGGGATTGATCAAGCCCTTCTTCTTCAAA
GTCTCTAGTGAGACTTCATCCCCCTCTAGAAAACCAGCTGCTTCTATGTC
TTTCAAGTTAACAGGGACATACTTAGGTAACCCAGCATGCATACCTCCGG
CAATCCCACGGAGCTTAGGAATTCGACGATAAAGAGGCATTTGACCACCT
TCAAAACCCTTTCTAACGCCAGGACCAAACCTCGATTTCTGACCTCTCAT
TCCAAACCCACAGCTGTTACCTTGCCCAGCTGCTATTCCTCTCCCCCTTT
CTCTTC
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