CF835984

Overview
NameCF835984
Unique NameCF835984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_ECO81 (50S ribosomal protein L15 OS=Escherichia coli O81 (strain ED1a) GN=rplO PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.348e-13
Identity = 52/131 (39.69%), Postives = 71/131 (54.20%), Query Frame = -3
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRGI +G G + G G +GQKSR G GVR+GFEGGQMPLYRR+PK     G           V L D+     +EG  V L TLK   +I   G + +   K++  GE++  +  +    +  A+  +EAAG
Sbjct:   20 GRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKF----GFTSRKAAITAEVRLSDLAK---VEGGVVDLNTLKAANII---GIQIEF-AKVILAGEVTTPVTVRGLRVTKGARAAIEAAG 139          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_ECO7I (50S ribosomal protein L15 OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=rplO PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.348e-13
Identity = 52/131 (39.69%), Postives = 71/131 (54.20%), Query Frame = -3
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRGI +G G + G G +GQKSR G GVR+GFEGGQMPLYRR+PK     G           V L D+     +EG  V L TLK   +I   G + +   K++  GE++  +  +    +  A+  +EAAG
Sbjct:   20 GRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKF----GFTSRKAAITAEVRLSDLAK---VEGGVVDLNTLKAANII---GIQIEF-AKVILAGEVTTPVTVRGLRVTKGARAAIEAAG 139          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_ECO5E (50S ribosomal protein L15 OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=rplO PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.348e-13
Identity = 52/131 (39.69%), Postives = 71/131 (54.20%), Query Frame = -3
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRGI +G G + G G +GQKSR G GVR+GFEGGQMPLYRR+PK     G           V L D+     +EG  V L TLK   +I   G + +   K++  GE++  +  +    +  A+  +EAAG
Sbjct:   20 GRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKF----GFTSRKAAITAEVRLSDLAK---VEGGVVDLNTLKAANII---GIQIEF-AKVILAGEVTTPVTVRGLRVTKGARAAIEAAG 139          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_ECO57 (50S ribosomal protein L15 OS=Escherichia coli O157:H7 GN=rplO PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.348e-13
Identity = 52/131 (39.69%), Postives = 71/131 (54.20%), Query Frame = -3
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRGI +G G + G G +GQKSR G GVR+GFEGGQMPLYRR+PK     G           V L D+     +EG  V L TLK   +I   G + +   K++  GE++  +  +    +  A+  +EAAG
Sbjct:   20 GRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKF----GFTSRKAAITAEVRLSDLAK---VEGGVVDLNTLKAANII---GIQIEF-AKVILAGEVTTPVTVRGLRVTKGARAAIEAAG 139          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_ECO55 (50S ribosomal protein L15 OS=Escherichia coli (strain 55989 / EAEC) GN=rplO PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.348e-13
Identity = 52/131 (39.69%), Postives = 71/131 (54.20%), Query Frame = -3
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRGI +G G + G G +GQKSR G GVR+GFEGGQMPLYRR+PK     G           V L D+     +EG  V L TLK   +I   G + +   K++  GE++  +  +    +  A+  +EAAG
Sbjct:   20 GRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKF----GFTSRKAAITAEVRLSDLAK---VEGGVVDLNTLKAANII---GIQIEF-AKVILAGEVTTPVTVRGLRVTKGARAAIEAAG 139          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_ECO45 (50S ribosomal protein L15 OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rplO PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.348e-13
Identity = 52/131 (39.69%), Postives = 71/131 (54.20%), Query Frame = -3
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRGI +G G + G G +GQKSR G GVR+GFEGGQMPLYRR+PK     G           V L D+     +EG  V L TLK   +I   G + +   K++  GE++  +  +    +  A+  +EAAG
Sbjct:   20 GRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKF----GFTSRKAAITAEVRLSDLAK---VEGGVVDLNTLKAANII---GIQIEF-AKVILAGEVTTPVTVRGLRVTKGARAAIEAAG 139          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_ECO27 (50S ribosomal protein L15 OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=rplO PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.348e-13
Identity = 52/131 (39.69%), Postives = 71/131 (54.20%), Query Frame = -3
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRGI +G G + G G +GQKSR G GVR+GFEGGQMPLYRR+PK     G           V L D+     +EG  V L TLK   +I   G + +   K++  GE++  +  +    +  A+  +EAAG
Sbjct:   20 GRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKF----GFTSRKAAITAEVRLSDLAK---VEGGVVDLNTLKAANII---GIQIEF-AKVILAGEVTTPVTVRGLRVTKGARAAIEAAG 139          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_ECO24 (50S ribosomal protein L15 OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=rplO PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.348e-13
Identity = 52/131 (39.69%), Postives = 71/131 (54.20%), Query Frame = -3
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRGI +G G + G G +GQKSR G GVR+GFEGGQMPLYRR+PK     G           V L D+     +EG  V L TLK   +I   G + +   K++  GE++  +  +    +  A+  +EAAG
Sbjct:   20 GRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKF----GFTSRKAAITAEVRLSDLAK---VEGGVVDLNTLKAANII---GIQIEF-AKVILAGEVTTPVTVRGLRVTKGARAAIEAAG 139          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_DICNV (50S ribosomal protein L15 OS=Dichelobacter nodosus (strain VCS1703A) GN=rplO PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.348e-13
Identity = 49/131 (37.40%), Postives = 72/131 (54.96%), Query Frame = -3
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRGI +G G + G G +GQK+R G   + GFEGGQMPL RR+PK RG       G  +   + L +++    ++ + + L  LK  GL +    ER +  K+  +G +SK +  +  + S  AK  LEAAG
Sbjct:   20 GRGIGSGLGKTSGKGHKGQKARSGGYHKVGFEGGQMPLQRRLPK-RGFRSLKKLGTAR---IRLSELQK---IDAEVIDLNALKAAGLAS----ERAVAAKVYLNGTISKAVTLRGVSISAGAKAALEAAG 139          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_DESDA (50S ribosomal protein L15 OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=rplO PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.348e-13
Identity = 53/135 (39.26%), Postives = 71/135 (52.59%), Query Frame = -3
Query:  403 RERGRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLP-KYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 804
            R  GRG  +G G + G G +GQ +R G GV  GFEGGQMPL RR+PK     G  +A     Y  +NL  +  A F   D ++L+ +  +GL          P+KIL  GE+   L  +A  FS +A EK+  AG
Sbjct:   17 RRVGRGSGSGLGCTAGKGHKGQNARAGGGVAPGFEGGQMPLQRRLPK----HGFKNAPFKVTYDVINLDRLLEA-FEGKDTITLDDIYARGLARMGA-----PVKILSRGEVKSALKVEAHKFSQTAAEKIRGAG 141          
The following BLAST results are available for this feature:
BLAST of CF835984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL15_ECO811.348e-1339.6950S ribosomal protein L15 OS=Escherichia coli O81 ... [more]
RL15_ECO7I1.348e-1339.6950S ribosomal protein L15 OS=Escherichia coli O7:K... [more]
RL15_ECO5E1.348e-1339.6950S ribosomal protein L15 OS=Escherichia coli O157... [more]
RL15_ECO571.348e-1339.6950S ribosomal protein L15 OS=Escherichia coli O157... [more]
RL15_ECO551.348e-1339.6950S ribosomal protein L15 OS=Escherichia coli (str... [more]
RL15_ECO451.348e-1339.6950S ribosomal protein L15 OS=Escherichia coli O45:... [more]
RL15_ECO271.348e-1339.6950S ribosomal protein L15 OS=Escherichia coli O127... [more]
RL15_ECO241.348e-1339.6950S ribosomal protein L15 OS=Escherichia coli O139... [more]
RL15_DICNV1.348e-1337.4050S ribosomal protein L15 OS=Dichelobacter nodosus... [more]
RL15_DESDA1.348e-1339.2650S ribosomal protein L15 OS=Desulfovibrio desulfu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02D20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835984 ID=CF835984; Name=CF835984; organism=Citrus sinensis; type=EST; length=806bp
TTTTTTTTTTTTTTTCAATCAATGGTGATCTAATCAACATAATACCTGTA
GATTTGGCTTTCCAGCTAAGTAACATGAGAATCAGAACATTGAGAGTTTA
GCTGAATTTTTAAAAGGGAGGGGATACAAAGAAGAGACAAATTCCAGAAA
TTACAGCTATAGACATCCTCCTCTCATTTCGCTACCCCGAAAACCTAAAA
CCAGAGAAAAAGAATCGAAGACAATTCAATGGCTCTACTTAGTTACAGTG
AGTGAAAAAAACCAAGTGGTTCAAGCTGAAGTTGAATCGGATGCAGCTGC
AGCAGCTCTCTTCTTGGCGAAGTATTCTTCAGCTCGTGCAAGGTTCTTAG
CTACTGATGGTTTCACCCACTTCTTTCGGCCAGGTAAGACAGTGAGGGTA
CAGCCTGCAGCTTCAAGCTTCTCCTTTGCTGATGTAGAGAAGGCACGAGC
CTTGAAGTTCAGCTTCTTGCTTAATTCTCCATCACCAAGAATCTTTAAAG
GCAGTTTCCTTTCTCTTCCTGAGGGATTGATCAAGCCCTTCTTCTTCAAA
GTCTCTAGTGAGACTTCATCCCCCTCTAGAAAACCAGCTGCTTCTATGTC
TTTCAAGTTAACAGGGACATACTTAGGTAACCCAGCATGCATACCTCCGG
CAATCCCACGGAGCTTAGGAATTCGACGATAAAGAGGCATTTGACCACCT
TCAAAACCCTTTCTAACGCCAGGACCAAACCTCGATTTCTGACCTCTCAT
TCCAAACCCACAGCTGTTACCTTGCCCAGCTGCTATTCCTCTCCCCCTTT
CTCTTC
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