CF835984

Overview
NameCF835984
Unique NameCF835984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_BACST (50S ribosomal protein L15 OS=Bacillus stearothermophilus GN=rplO PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.345e-21
Identity = 61/131 (46.56%), Postives = 81/131 (61.83%), Query Frame = -3
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRGI +G G + G G +GQ +R G GVR GFEGGQ PL+RR+PK     G  +    +Y  VNL+ +    F +G EV+ E L + G+I+    + K  +KILG G++ KKL  KA  FS SAKE +EAAG
Sbjct:   20 GRGIGSGNGKTSGRGQKGQNARSGGGVRLGFEGGQTPLFRRLPK----RGFTNINRKEYAVVNLEKLNR--FEDGTEVTPELLLETGVIS----KLKSGVKILGKGQIEKKLTVKAHKFSASAKEAIEAAG 140          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STRGC (50S ribosomal protein L15 OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=rplO PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.756e-21
Identity = 60/137 (43.80%), Postives = 85/137 (62.04%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG ++G G + G G +GQK+R G GVR GFEGGQ PL+RR+PK     G ++    +Y  VNL  + A  F +G EV+   L + G++    +  K  +KILG+GEL+KKL  KA  FS SA+E + A G ++ V+
Sbjct:   20 GRGTSSGNGKTAGRGQKGQKARSGGGVRLGFEGGQTPLFRRLPK----RGFLNVNRKEYAIVNLDQLNA--FEDGAEVTPVVLVESGIV----KAEKSGVKILGNGELTKKLTVKAAKFSKSAEEAITAKGGSVEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_CLOTH (50S ribosomal protein L15 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=rplO PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.756e-21
Identity = 63/140 (45.00%), Postives = 84/140 (60.00%), Query Frame = -3
Query:  385 RERGRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 804
            + +GRG   G G + G G +GQ +R G GVR GFEGGQMPLYRR+PK     G  +     Y  VN+  + A  F +G  V+ E LK+KG+I    ++    + ILG+GEL KKL  KA  FS +A EK+EAAG  + V+
Sbjct:   17 KRKGRGHGTGNGKTAGRGHKGQNARSGGGVRPGFEGGQMPLYRRVPK----RGFTNIFSKVYTEVNVSALNA--FDDGTVVTQELLKEKGII----KKINDGVVILGNGELKKKLTVKAARFSKTAAEKIEAAGGKVEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_CARHZ (50S ribosomal protein L15 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rplO PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.756e-21
Identity = 65/139 (46.76%), Postives = 82/139 (58.99%), Query Frame = -3
Query:  385 RGRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPK-YVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 798
            +G+GI +G G + G G +GQK+R G GVR GFEGGQMPLYRR+PK      G H    K  + +N+  +    F +G  V+ E L + G+I   G      +KILG GEL K L  KA AFS SAKEK+ AAG    VL
Sbjct:   19 KGQGIGSGLGKTAGRGQKGQKARSGGGVRPGFEGGQMPLYRRLPK-----RGFHNKFAKEIIAINVDRLNK--FEDGTVVTPELLLETGIIKKIGD----GVKILGGGELKKALTVKAHAFSESAKEKITAAGGQAEVL 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STRU0 (50S ribosomal protein L15 OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=rplO PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.294e-21
Identity = 61/137 (44.53%), Postives = 83/137 (60.58%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG ++G G + G G +GQKSR G GVR GFEGGQ PL+RR+PK     G  +    +Y  VNL  +    F +G EV+   LK+ G++    R  K  +KILG+GEL+KKL  KA  FS SA+  + A G ++ V+
Sbjct:   20 GRGTSSGNGKTSGRGQKGQKSRSGGGVRLGFEGGQTPLFRRMPK----RGFSNINTKEYALVNLDQLNV--FEDGTEVTPVVLKEAGIV----RAEKSGVKILGNGELTKKLTVKAAKFSKSAEAAITAKGGSIEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_GEOSW (50S ribosomal protein L15 OS=Geobacillus sp. (strain WCH70) GN=rplO PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.294e-21
Identity = 61/131 (46.56%), Postives = 81/131 (61.83%), Query Frame = -3
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRGI +G+G + G G +GQ +R G GVR GFEGGQ PL+RR+PK     G  +    +Y  VNL  +    F +G EV+ E L + G+I+    + K  +KILG G++ KKL  KA  FS SAKE +EAAG
Sbjct:   20 GRGIGSGKGKTSGRGQKGQNARSGGGVRLGFEGGQTPLFRRLPK----RGFTNINRKEYAIVNLDKLNR--FEDGTEVTPELLLETGVIS----KLKSGVKILGKGQIEKKLTVKAHKFSASAKEAIEAAG 140          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_LISW6 (50S ribosomal protein L15 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=rplO PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.996e-21
Identity = 61/131 (46.56%), Postives = 79/131 (60.31%), Query Frame = -3
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRG  +G G + G G +GQK+R G GVR GFEGGQ+PL+RRIPK     G  +    ++  VNL  +    F +G EV+ E L + G+I    R  K  +KIL DG + KKL  KA  FS +AKE +EAAG
Sbjct:   20 GRGTGSGNGKTSGRGHKGQKARSGGGVRLGFEGGQLPLFRRIPK----RGFTNINRKEFAIVNLDVLNR--FEDGTEVTPELLIESGII----RNEKSGIKILSDGNIEKKLTVKANKFSAAAKEAIEAAG 140          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STRT2 (50S ribosomal protein L15 OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rplO PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.912e-21
Identity = 59/137 (43.07%), Postives = 84/137 (61.31%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG ++G G + G G +GQK+R G G+R GFEGGQ PL+RR+PK     G  +    +Y  VNL+ +    F +G EV+   LK+ G+I    R  K  +K+LG+GEL+KKL  KA  FS SA+  + A G ++ V+
Sbjct:   20 GRGTSSGNGKTSGRGQKGQKARSGVGLRPGFEGGQTPLFRRLPK----RGFTNINAKEYTLVNLEQLNV--FEDGTEVTPVVLKEAGII----RAEKSGVKVLGNGELTKKLTVKAAKFSKSAEAAITAKGGSIEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STRT1 (50S ribosomal protein L15 OS=Streptococcus thermophilus (strain CNRZ 1066) GN=rplO PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.912e-21
Identity = 59/137 (43.07%), Postives = 84/137 (61.31%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG ++G G + G G +GQK+R G G+R GFEGGQ PL+RR+PK     G  +    +Y  VNL+ +    F +G EV+   LK+ G+I    R  K  +K+LG+GEL+KKL  KA  FS SA+  + A G ++ V+
Sbjct:   20 GRGTSSGNGKTSGRGQKGQKARSGVGLRPGFEGGQTPLFRRLPK----RGFTNINAKEYTLVNLEQLNV--FEDGTEVTPVVLKEAGII----RAEKSGVKVLGNGELTKKLTVKAAKFSKSAEAAITAKGGSIEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STRSV (50S ribosomal protein L15 OS=Streptococcus sanguinis (strain SK36) GN=rplO PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.912e-21
Identity = 60/137 (43.80%), Postives = 85/137 (62.04%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG ++G G + G G +GQK+R G GVR GFEGGQ PL+RR+PK     G ++    +Y  VNL  + A  F +G EV+   L + G++    +  K  +KILG+GEL+KKL  KA  FS SA+E + A G ++ V+
Sbjct:   20 GRGTSSGNGKTSGRGQKGQKARSGGGVRLGFEGGQTPLFRRLPK----RGFLNINRKEYAIVNLDQLNA--FEDGAEVTPVVLIEAGIV----KAEKSGIKILGNGELTKKLTVKAAKFSKSAEEAITAKGGSVEVI 146          
The following BLAST results are available for this feature:
BLAST of CF835984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL15_BACST1.345e-2146.5650S ribosomal protein L15 OS=Bacillus stearothermo... [more]
RL15_STRGC1.756e-2143.8050S ribosomal protein L15 OS=Streptococcus gordoni... [more]
RL15_CLOTH1.756e-2145.0050S ribosomal protein L15 OS=Clostridium thermocel... [more]
RL15_CARHZ1.756e-2146.7650S ribosomal protein L15 OS=Carboxydothermus hydr... [more]
RL15_STRU02.294e-2144.5350S ribosomal protein L15 OS=Streptococcus uberis ... [more]
RL15_GEOSW2.294e-2146.5650S ribosomal protein L15 OS=Geobacillus sp. (stra... [more]
RL15_LISW62.996e-2146.5650S ribosomal protein L15 OS=Listeria welshimeri s... [more]
RL15_STRT23.912e-2143.0750S ribosomal protein L15 OS=Streptococcus thermop... [more]
RL15_STRT13.912e-2143.0750S ribosomal protein L15 OS=Streptococcus thermop... [more]
RL15_STRSV3.912e-2143.8050S ribosomal protein L15 OS=Streptococcus sanguin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02D20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835984 ID=CF835984; Name=CF835984; organism=Citrus sinensis; type=EST; length=806bp
TTTTTTTTTTTTTTTCAATCAATGGTGATCTAATCAACATAATACCTGTA
GATTTGGCTTTCCAGCTAAGTAACATGAGAATCAGAACATTGAGAGTTTA
GCTGAATTTTTAAAAGGGAGGGGATACAAAGAAGAGACAAATTCCAGAAA
TTACAGCTATAGACATCCTCCTCTCATTTCGCTACCCCGAAAACCTAAAA
CCAGAGAAAAAGAATCGAAGACAATTCAATGGCTCTACTTAGTTACAGTG
AGTGAAAAAAACCAAGTGGTTCAAGCTGAAGTTGAATCGGATGCAGCTGC
AGCAGCTCTCTTCTTGGCGAAGTATTCTTCAGCTCGTGCAAGGTTCTTAG
CTACTGATGGTTTCACCCACTTCTTTCGGCCAGGTAAGACAGTGAGGGTA
CAGCCTGCAGCTTCAAGCTTCTCCTTTGCTGATGTAGAGAAGGCACGAGC
CTTGAAGTTCAGCTTCTTGCTTAATTCTCCATCACCAAGAATCTTTAAAG
GCAGTTTCCTTTCTCTTCCTGAGGGATTGATCAAGCCCTTCTTCTTCAAA
GTCTCTAGTGAGACTTCATCCCCCTCTAGAAAACCAGCTGCTTCTATGTC
TTTCAAGTTAACAGGGACATACTTAGGTAACCCAGCATGCATACCTCCGG
CAATCCCACGGAGCTTAGGAATTCGACGATAAAGAGGCATTTGACCACCT
TCAAAACCCTTTCTAACGCCAGGACCAAACCTCGATTTCTGACCTCTCAT
TCCAAACCCACAGCTGTTACCTTGCCCAGCTGCTATTCCTCTCCCCCTTT
CTCTTC
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