CF835984

Overview
NameCF835984
Unique NameCF835984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STRA5 (50S ribosomal protein L15 OS=Streptococcus agalactiae serotype V GN=rplO PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.912e-21
Identity = 60/137 (43.80%), Postives = 84/137 (61.31%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG ++G G + G G +GQK+R G GVR GFEGGQ PL+RR+PK     G  +    +Y  VNL  +    F +G EV+   LK+ G++    R  K  +KILG+GEL+KKL+ KA  FS SA+  + A G ++ V+
Sbjct:   20 GRGTSSGNGKTSGRGQKGQKARSGGGVRLGFEGGQTPLFRRMPK----RGFSNINAKEYALVNLDQLNV--FEDGTEVTPVVLKEAGIV----RAEKSGVKILGNGELTKKLSVKAAKFSKSAEAAITAKGGSIEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STRA3 (50S ribosomal protein L15 OS=Streptococcus agalactiae serotype III GN=rplO PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.912e-21
Identity = 60/137 (43.80%), Postives = 84/137 (61.31%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG ++G G + G G +GQK+R G GVR GFEGGQ PL+RR+PK     G  +    +Y  VNL  +    F +G EV+   LK+ G++    R  K  +KILG+GEL+KKL+ KA  FS SA+  + A G ++ V+
Sbjct:   20 GRGTSSGNGKTSGRGQKGQKARSGGGVRLGFEGGQTPLFRRMPK----RGFSNINAKEYALVNLDQLNV--FEDGTEVTPVVLKEAGIV----RAEKSGVKILGNGELTKKLSVKAAKFSKSAEAAITAKGGSIEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STRA1 (50S ribosomal protein L15 OS=Streptococcus agalactiae serotype Ia GN=rplO PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.912e-21
Identity = 60/137 (43.80%), Postives = 84/137 (61.31%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG ++G G + G G +GQK+R G GVR GFEGGQ PL+RR+PK     G  +    +Y  VNL  +    F +G EV+   LK+ G++    R  K  +KILG+GEL+KKL+ KA  FS SA+  + A G ++ V+
Sbjct:   20 GRGTSSGNGKTSGRGQKGQKARSGGGVRLGFEGGQTPLFRRMPK----RGFSNINAKEYALVNLDQLNV--FEDGTEVTPVVLKEAGIV----RAEKSGVKILGNGELTKKLSVKAAKFSKSAEAAITAKGGSIEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_MOOTA (50S ribosomal protein L15 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplO PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.912e-21
Identity = 63/137 (45.99%), Postives = 85/137 (62.04%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRGI +G G + G G +GQK+R G GVR+GFEGGQMPL RR+PK     G  +    K VP+N+ ++E   F     V+ E L   GL+    ++ +  +KILGDGEL+KKL  K +A S  A EK+EAAG  + V+
Sbjct:   20 GRGIGSGLGKTSGRGHKGQKARSGGGVRRGFEGGQMPLTRRLPK----RGFTNIFARKLVPINVGELER--FEPETVVTPELLHDAGLV----KQARDGVKILGDGELTKKLTVKVQAASRKAIEKIEAAGGKVEVM 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_LYSSC (50S ribosomal protein L15 OS=Lysinibacillus sphaericus (strain C3-41) GN=rplO PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.912e-21
Identity = 61/137 (44.53%), Postives = 81/137 (59.12%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRGI +G G + G G +GQ +R G GVR GFEGGQ PL+RR+PK     G  +    +Y  VNL  +    F +G EV+   L + GL++      K  +K+LG+G L+KKL  KA  FS SAKE +E AG T  V+
Sbjct:   20 GRGIGSGNGKTAGKGHKGQNARSGGGVRPGFEGGQNPLFRRLPK----RGFTNINRKEYAIVNLDALNR--FEDGAEVTTALLLETGLVS----NEKAGIKVLGNGTLNKKLTVKAHKFSASAKEAIENAGGTTEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_LISIN (50S ribosomal protein L15 OS=Listeria innocua GN=rplO PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.912e-21
Identity = 61/131 (46.56%), Postives = 79/131 (60.31%), Query Frame = -3
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRG  +G G + G G +GQK+R G GVR GFEGGQ+PL+RRIPK     G  +    ++  VNL  +    F +G EV+ E L + G+I    R  K  +KIL DG + KKL  KA  FS +AKE +EAAG
Sbjct:   20 GRGTGSGNGKTSGRGHKGQKARSGGGVRLGFEGGQLPLFRRIPK----RGFTNINRKEFAIVNLDVLNR--FEDGTEVTPELLIETGII----RNEKSGIKILSDGNIEKKLTVKANKFSAAAKEAIEAAG 140          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_CLOK5 (50S ribosomal protein L15 OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=rplO PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.912e-21
Identity = 62/137 (45.26%), Postives = 86/137 (62.77%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG  +G G + G G +GQK+R G GVR GFEGGQMPLYRR+PK     G  +    +Y  +N++ +    F +G E++ E L +K +I    R+ K  LKILG+GEL KKL  KA  F+ +A +K+EAAG  + V+
Sbjct:   20 GRGTGSGLGRNAGKGEKGQKARAGGGVRIGFEGGQMPLYRRVPK----RGFTNIFAKQYSELNVERLNI--FEDGTEITPELLIEKRMI----RKSKDGLKILGNGELQKKLTVKAVKFTKAAAQKIEAAGGKVEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_CLOK1 (50S ribosomal protein L15 OS=Clostridium kluyveri (strain NBRC 12016) GN=rplO PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.912e-21
Identity = 62/137 (45.26%), Postives = 86/137 (62.77%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG  +G G + G G +GQK+R G GVR GFEGGQMPLYRR+PK     G  +    +Y  +N++ +    F +G E++ E L +K +I    R+ K  LKILG+GEL KKL  KA  F+ +A +K+EAAG  + V+
Sbjct:   20 GRGTGSGLGRNAGKGEKGQKARAGGGVRIGFEGGQMPLYRRVPK----RGFTNIFAKQYSELNVERLNI--FEDGTEITPELLIEKRMI----RKSKDGLKILGNGELQKKLTVKAVKFTKAAAQKIEAAGGKVEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_OCEIH (50S ribosomal protein L15 OS=Oceanobacillus iheyensis GN=rplO PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.110e-21
Identity = 59/131 (45.04%), Postives = 80/131 (61.07%), Query Frame = -3
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRG+++G G + G G +GQK+R G GVR GFEGGQMPL++R+PK     G  +    +Y  VNL  +    F EG E++ E L + G+++    +    +KILG G L KKL  KA  FS SAKE +E AG
Sbjct:   20 GRGMSSGNGKTSGRGHKGQKARSGGGVRPGFEGGQMPLFQRLPK----RGFTNVNRKEYAIVNLDTLNR--FEEGTEITPELLLETGVVS----KLNAGIKILGKGTLEKKLTVKAHKFSASAKEAIETAG 140          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STRTD (50S ribosomal protein L15 OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=rplO PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.673e-21
Identity = 59/137 (43.07%), Postives = 83/137 (60.58%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG ++G G + G G +GQK+R G G+R GFEGGQ PL+RR+PK     G  +    +Y  VNL  +    F +G EV+   LK+ G+I    R  K  +K+LG+GEL+KKL  KA  FS SA+  + A G ++ V+
Sbjct:   20 GRGTSSGNGKTSGRGQKGQKARSGVGLRPGFEGGQTPLFRRLPK----RGFTNINAKEYTLVNLDQLNV--FEDGTEVTPVVLKEAGII----RAEKSGVKVLGNGELTKKLTVKAAKFSKSAEAAITAKGGSIEVI 146          
The following BLAST results are available for this feature:
BLAST of CF835984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL15_STRA53.912e-2143.8050S ribosomal protein L15 OS=Streptococcus agalact... [more]
RL15_STRA33.912e-2143.8050S ribosomal protein L15 OS=Streptococcus agalact... [more]
RL15_STRA13.912e-2143.8050S ribosomal protein L15 OS=Streptococcus agalact... [more]
RL15_MOOTA3.912e-2145.9950S ribosomal protein L15 OS=Moorella thermoacetic... [more]
RL15_LYSSC3.912e-2144.5350S ribosomal protein L15 OS=Lysinibacillus sphaer... [more]
RL15_LISIN3.912e-2146.5650S ribosomal protein L15 OS=Listeria innocua GN=r... [more]
RL15_CLOK53.912e-2145.2650S ribosomal protein L15 OS=Clostridium kluyveri ... [more]
RL15_CLOK13.912e-2145.2650S ribosomal protein L15 OS=Clostridium kluyveri ... [more]
RL15_OCEIH5.110e-2145.0450S ribosomal protein L15 OS=Oceanobacillus iheyen... [more]
RL15_STRTD6.673e-2143.0750S ribosomal protein L15 OS=Streptococcus thermop... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02D20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835984 ID=CF835984; Name=CF835984; organism=Citrus sinensis; type=EST; length=806bp
TTTTTTTTTTTTTTTCAATCAATGGTGATCTAATCAACATAATACCTGTA
GATTTGGCTTTCCAGCTAAGTAACATGAGAATCAGAACATTGAGAGTTTA
GCTGAATTTTTAAAAGGGAGGGGATACAAAGAAGAGACAAATTCCAGAAA
TTACAGCTATAGACATCCTCCTCTCATTTCGCTACCCCGAAAACCTAAAA
CCAGAGAAAAAGAATCGAAGACAATTCAATGGCTCTACTTAGTTACAGTG
AGTGAAAAAAACCAAGTGGTTCAAGCTGAAGTTGAATCGGATGCAGCTGC
AGCAGCTCTCTTCTTGGCGAAGTATTCTTCAGCTCGTGCAAGGTTCTTAG
CTACTGATGGTTTCACCCACTTCTTTCGGCCAGGTAAGACAGTGAGGGTA
CAGCCTGCAGCTTCAAGCTTCTCCTTTGCTGATGTAGAGAAGGCACGAGC
CTTGAAGTTCAGCTTCTTGCTTAATTCTCCATCACCAAGAATCTTTAAAG
GCAGTTTCCTTTCTCTTCCTGAGGGATTGATCAAGCCCTTCTTCTTCAAA
GTCTCTAGTGAGACTTCATCCCCCTCTAGAAAACCAGCTGCTTCTATGTC
TTTCAAGTTAACAGGGACATACTTAGGTAACCCAGCATGCATACCTCCGG
CAATCCCACGGAGCTTAGGAATTCGACGATAAAGAGGCATTTGACCACCT
TCAAAACCCTTTCTAACGCCAGGACCAAACCTCGATTTCTGACCTCTCAT
TCCAAACCCACAGCTGTTACCTTGCCCAGCTGCTATTCCTCTCCCCCTTT
CTCTTC
back to top