CF835984

Overview
NameCF835984
Unique NameCF835984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_EUBR3 (50S ribosomal protein L15 OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=rplO PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.673e-21
Identity = 63/132 (47.73%), Postives = 82/132 (62.12%), Query Frame = -3
Query:  403 RGRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 798
            RGRG  +G G + G G +GQK+R G   R GFEGGQMPLYRR+PK     G  +      VP+NL  +E   F     VS+ETL + G++    +  +  +KILG+GEL+KKL  +A AFS SAKEK+EA G
Sbjct:   20 RGRGHGSGNGKTAGKGHKGQKARSG-APRPGFEGGQMPLYRRLPK----RGFKNRNTLTIVPINLSALER--FDNDAVVSVETLIEAGIV----KNPRDGVKILGNGELTKKLTVQANAFSASAKEKIEALG 140          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_BACHD (50S ribosomal protein L15 OS=Bacillus halodurans GN=rplO PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 6.673e-21
Identity = 61/131 (46.56%), Postives = 80/131 (61.07%), Query Frame = -3
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRGI +G G + G G +GQ +R G GVR GFEGGQ PLYRR+PK     G  +    ++  VNL+ +    F +G EVS E L + G+++      K  +KILG+G+L KKL  KA  FS SA E +EAAG
Sbjct:   20 GRGIGSGNGKTAGKGHKGQNARSGGGVRPGFEGGQNPLYRRLPK----RGFTNPTRKEFAVVNLEKLNR--FEDGTEVSPELLLETGVVS----NAKDGIKILGNGKLEKKLTVKANKFSASAVEAIEAAG 140          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_ALKOO (50S ribosomal protein L15 OS=Alkaliphilus oremlandii (strain OhILAs) GN=rplO PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.673e-21
Identity = 63/134 (47.01%), Postives = 84/134 (62.69%), Query Frame = -3
Query:  403 RERGRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 804
            + +GRG A+G G + G G  GQK+R G GVR GFEGGQMPLYRR+PK RG    + A +  Y  +N+  + A  F  G  V+ E LK+ G+I    +  K  +KILG+G L K L  +A+ F+ SA EK+EAAG
Sbjct:   17 KRKGRGTASGLGKTAGRGSNGQKARSGGGVRPGFEGGQMPLYRRLPK-RGFT-NIFANV--YNEINIDRLNA--FENGTVVTAELLKETGVIK---KIEKDGIKILGNGNLEKSLTVQAQKFTKSAIEKIEAAG 141          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STRPZ (50S ribosomal protein L15 OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=rplO PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.138e-20
Identity = 60/137 (43.80%), Postives = 82/137 (59.85%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG ++G G + G G +GQK+R G GVR GFEGGQ PL+RRIPK     G  +    +Y  VNL  +    F +G EV+   LK  G++    R  K  +K+LG+GEL+KKL  KA  FS SA+  + A G ++ V+
Sbjct:   20 GRGTSSGNGKTSGRGQKGQKARSGGGVRLGFEGGQTPLFRRIPK----RGFTNINTKEYALVNLDQLNV--FDDGTEVTPAILKDAGIV----RAEKSGVKVLGNGELTKKLTVKAAKFSKSAEAAIIAKGGSIEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STRPM (50S ribosomal protein L15 OS=Streptococcus pyogenes serotype M28 GN=rplO PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.138e-20
Identity = 60/137 (43.80%), Postives = 82/137 (59.85%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG ++G G + G G +GQK+R G GVR GFEGGQ PL+RRIPK     G  +    +Y  VNL  +    F +G EV+   LK  G++    R  K  +K+LG+GEL+KKL  KA  FS SA+  + A G ++ V+
Sbjct:   20 GRGTSSGNGKTSGRGQKGQKARSGGGVRLGFEGGQTPLFRRIPK----RGFTNINTKEYALVNLDQLNV--FDDGTEVTPAILKDAGIV----RAEKSGVKVLGNGELTKKLTVKAAKFSKSAEAAIIAKGGSIEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STRPG (50S ribosomal protein L15 OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=rplO PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.138e-20
Identity = 60/137 (43.80%), Postives = 82/137 (59.85%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG ++G G + G G +GQK+R G GVR GFEGGQ PL+RRIPK     G  +    +Y  VNL  +    F +G EV+   LK  G++    R  K  +K+LG+GEL+KKL  KA  FS SA+  + A G ++ V+
Sbjct:   20 GRGTSSGNGKTSGRGQKGQKARSGGGVRLGFEGGQTPLFRRIPK----RGFTNINTKEYALVNLDQLNV--FDDGTEVTPAILKDAGIV----RAEKSGVKVLGNGELTKKLTVKAAKFSKSAEAAIIAKGGSIEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STRPF (50S ribosomal protein L15 OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=rplO PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.138e-20
Identity = 60/137 (43.80%), Postives = 82/137 (59.85%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG ++G G + G G +GQK+R G GVR GFEGGQ PL+RRIPK     G  +    +Y  VNL  +    F +G EV+   LK  G++    R  K  +K+LG+GEL+KKL  KA  FS SA+  + A G ++ V+
Sbjct:   20 GRGTSSGNGKTSGRGQKGQKARSGGGVRLGFEGGQTPLFRRIPK----RGFTNINTKEYALVNLDQLNV--FDDGTEVTPAILKDAGIV----RAEKSGVKVLGNGELTKKLTVKAAKFSKSAEAAIIAKGGSIEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STRPD (50S ribosomal protein L15 OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=rplO PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.138e-20
Identity = 60/137 (43.80%), Postives = 82/137 (59.85%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG ++G G + G G +GQK+R G GVR GFEGGQ PL+RRIPK     G  +    +Y  VNL  +    F +G EV+   LK  G++    R  K  +K+LG+GEL+KKL  KA  FS SA+  + A G ++ V+
Sbjct:   20 GRGTSSGNGKTSGRGQKGQKARSGGGVRLGFEGGQTPLFRRIPK----RGFTNINTKEYALVNLDQLNV--FDDGTEVTPAILKDAGIV----RAEKSGVKVLGNGELTKKLTVKAAKFSKSAEAAIIAKGGSIEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STRPC (50S ribosomal protein L15 OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=rplO PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.138e-20
Identity = 60/137 (43.80%), Postives = 82/137 (59.85%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG ++G G + G G +GQK+R G GVR GFEGGQ PL+RRIPK     G  +    +Y  VNL  +    F +G EV+   LK  G++    R  K  +K+LG+GEL+KKL  KA  FS SA+  + A G ++ V+
Sbjct:   20 GRGTSSGNGKTSGRGQKGQKARSGGGVRLGFEGGQTPLFRRIPK----RGFTNINTKEYALVNLDQLNV--FDDGTEVTPAILKDAGIV----RAEKSGVKVLGNGELTKKLTVKAAKFSKSAEAAIIAKGGSIEVI 146          
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STRPB (50S ribosomal protein L15 OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=rplO PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.138e-20
Identity = 60/137 (43.80%), Postives = 82/137 (59.85%), Query Frame = -3
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG ++G G + G G +GQK+R G GVR GFEGGQ PL+RRIPK     G  +    +Y  VNL  +    F +G EV+   LK  G++    R  K  +K+LG+GEL+KKL  KA  FS SA+  + A G ++ V+
Sbjct:   20 GRGTSSGNGKTSGRGQKGQKARSGGGVRLGFEGGQTPLFRRIPK----RGFTNINTKEYALVNLDQLNV--FDDGTEVTPAILKDAGIV----RAEKSGVKVLGNGELTKKLTVKAAKFSKSAEAAIIAKGGSIEVI 146          
The following BLAST results are available for this feature:
BLAST of CF835984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL15_EUBR36.673e-2147.7350S ribosomal protein L15 OS=Eubacterium rectale (... [more]
RL15_BACHD6.673e-2146.5650S ribosomal protein L15 OS=Bacillus halodurans G... [more]
RL15_ALKOO6.673e-2147.0150S ribosomal protein L15 OS=Alkaliphilus oremland... [more]
RL15_STRPZ1.138e-2043.8050S ribosomal protein L15 OS=Streptococcus pyogene... [more]
RL15_STRPM1.138e-2043.8050S ribosomal protein L15 OS=Streptococcus pyogene... [more]
RL15_STRPG1.138e-2043.8050S ribosomal protein L15 OS=Streptococcus pyogene... [more]
RL15_STRPF1.138e-2043.8050S ribosomal protein L15 OS=Streptococcus pyogene... [more]
RL15_STRPD1.138e-2043.8050S ribosomal protein L15 OS=Streptococcus pyogene... [more]
RL15_STRPC1.138e-2043.8050S ribosomal protein L15 OS=Streptococcus pyogene... [more]
RL15_STRPB1.138e-2043.8050S ribosomal protein L15 OS=Streptococcus pyogene... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02D20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835984 ID=CF835984; Name=CF835984; organism=Citrus sinensis; type=EST; length=806bp
TTTTTTTTTTTTTTTCAATCAATGGTGATCTAATCAACATAATACCTGTA
GATTTGGCTTTCCAGCTAAGTAACATGAGAATCAGAACATTGAGAGTTTA
GCTGAATTTTTAAAAGGGAGGGGATACAAAGAAGAGACAAATTCCAGAAA
TTACAGCTATAGACATCCTCCTCTCATTTCGCTACCCCGAAAACCTAAAA
CCAGAGAAAAAGAATCGAAGACAATTCAATGGCTCTACTTAGTTACAGTG
AGTGAAAAAAACCAAGTGGTTCAAGCTGAAGTTGAATCGGATGCAGCTGC
AGCAGCTCTCTTCTTGGCGAAGTATTCTTCAGCTCGTGCAAGGTTCTTAG
CTACTGATGGTTTCACCCACTTCTTTCGGCCAGGTAAGACAGTGAGGGTA
CAGCCTGCAGCTTCAAGCTTCTCCTTTGCTGATGTAGAGAAGGCACGAGC
CTTGAAGTTCAGCTTCTTGCTTAATTCTCCATCACCAAGAATCTTTAAAG
GCAGTTTCCTTTCTCTTCCTGAGGGATTGATCAAGCCCTTCTTCTTCAAA
GTCTCTAGTGAGACTTCATCCCCCTCTAGAAAACCAGCTGCTTCTATGTC
TTTCAAGTTAACAGGGACATACTTAGGTAACCCAGCATGCATACCTCCGG
CAATCCCACGGAGCTTAGGAATTCGACGATAAAGAGGCATTTGACCACCT
TCAAAACCCTTTCTAACGCCAGGACCAAACCTCGATTTCTGACCTCTCAT
TCCAAACCCACAGCTGTTACCTTGCCCAGCTGCTATTCCTCTCCCCCTTT
CTCTTC
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