CF835984

Overview
NameCF835984
Unique NameCF835984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STRP8 (50S ribosomal protein L15 OS=Streptococcus pyogenes serotype M18 GN=rplO PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.138e-20
Identity = 60/137 (43.80%), Postives = 82/137 (59.85%), Query Frame = -3 
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG ++G G + G G +GQK+R G GVR GFEGGQ PL+RRIPK     G  +    +Y  VNL  +    F +G EV+   LK  G++    R  K  +K+LG+GEL+KKL  KA  FS SA+  + A G ++ V+
Sbjct:   20 GRGTSSGNGKTSGRGQKGQKARSGGGVRLGFEGGQTPLFRRIPK----RGFTNINTKEYALVNLDQLNV--FDDGTEVTPAILKDAGIV----RAEKSGVKVLGNGELTKKLTVKAAKFSKSAEAAIIAKGGSIEVI 146
[Close]
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STRP6 (50S ribosomal protein L15 OS=Streptococcus pyogenes serotype M6 GN=rplO PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.138e-20
Identity = 60/137 (43.80%), Postives = 82/137 (59.85%), Query Frame = -3 
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG ++G G + G G +GQK+R G GVR GFEGGQ PL+RRIPK     G  +    +Y  VNL  +    F +G EV+   LK  G++    R  K  +K+LG+GEL+KKL  KA  FS SA+  + A G ++ V+
Sbjct:   20 GRGTSSGNGKTSGRGQKGQKARSGGGVRLGFEGGQTPLFRRIPK----RGFTNINTKEYALVNLDQLNV--FDDGTEVTPAILKDAGIV----RAEKSGVKVLGNGELTKKLTVKAAKFSKSAEAAIIAKGGSIEVI 146
[Close]
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STRP3 (50S ribosomal protein L15 OS=Streptococcus pyogenes serotype M3 GN=rplO PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.138e-20
Identity = 60/137 (43.80%), Postives = 82/137 (59.85%), Query Frame = -3 
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG ++G G + G G +GQK+R G GVR GFEGGQ PL+RRIPK     G  +    +Y  VNL  +    F +G EV+   LK  G++    R  K  +K+LG+GEL+KKL  KA  FS SA+  + A G ++ V+
Sbjct:   20 GRGTSSGNGKTSGRGQKGQKARSGGGVRLGFEGGQTPLFRRIPK----RGFTNINTKEYALVNLDQLNV--FDDGTEVTPAILKDAGIV----RAEKSGVKVLGNGELTKKLTVKAAKFSKSAEAAIIAKGGSIEVI 146
[Close]
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STRP1 (50S ribosomal protein L15 OS=Streptococcus pyogenes serotype M1 GN=rplO PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.138e-20
Identity = 60/137 (43.80%), Postives = 82/137 (59.85%), Query Frame = -3 
Query:  385 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 795
            GRG ++G G + G G +GQK+R G GVR GFEGGQ PL+RRIPK     G  +    +Y  VNL  +    F +G EV+   LK  G++    R  K  +K+LG+GEL+KKL  KA  FS SA+  + A G ++ V+
Sbjct:   20 GRGTSSGNGKTSGRGQKGQKARSGGGVRLGFEGGQTPLFRRIPK----RGFTNINTKEYALVNLDQLNV--FDDGTEVTPAILKDAGIV----RAEKSGVKVLGNGELTKKLTVKAAKFSKSAEAAIIAKGGSIEVI 146
[Close]
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STAAW (50S ribosomal protein L15 OS=Staphylococcus aureus (strain MW2) GN=rplO PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.138e-20
Identity = 58/131 (44.27%), Postives = 78/131 (59.54%), Query Frame = -3 
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRG+A G G + G G +GQK+R G GVR GFEGGQ+PL+RR+PK     G  +    +Y  VNL  +    F +G EV+   L + G++    +  K  +KILG+G L KKL  KA  FS SA E ++A G
Sbjct:   20 GRGVATGNGKTSGRGHKGQKARSGGGVRPGFEGGQLPLFRRLPK----RGFTNINRKEYAIVNLDQLNK--FEDGTEVTPALLVESGVV----KNEKSGIKILGNGSLDKKLTVKAHKFSASAAEAIDAKG 140
[Close]
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STAAT (50S ribosomal protein L15 OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=rplO PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.138e-20
Identity = 58/131 (44.27%), Postives = 78/131 (59.54%), Query Frame = -3 
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRG+A G G + G G +GQK+R G GVR GFEGGQ+PL+RR+PK     G  +    +Y  VNL  +    F +G EV+   L + G++    +  K  +KILG+G L KKL  KA  FS SA E ++A G
Sbjct:   20 GRGVATGNGKTSGRGHKGQKARSGGGVRPGFEGGQLPLFRRLPK----RGFTNINRKEYAIVNLDQLNK--FEDGTEVTPALLVESGVV----KNEKSGIKILGNGSLDKKLTVKAHKFSASAAEAIDAKG 140
[Close]
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STAAS (50S ribosomal protein L15 OS=Staphylococcus aureus (strain MSSA476) GN=rplO PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.138e-20
Identity = 58/131 (44.27%), Postives = 78/131 (59.54%), Query Frame = -3 
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRG+A G G + G G +GQK+R G GVR GFEGGQ+PL+RR+PK     G  +    +Y  VNL  +    F +G EV+   L + G++    +  K  +KILG+G L KKL  KA  FS SA E ++A G
Sbjct:   20 GRGVATGNGKTSGRGHKGQKARSGGGVRPGFEGGQLPLFRRLPK----RGFTNINRKEYAIVNLDQLNK--FEDGTEVTPALLVESGVV----KNEKSGIKILGNGSLDKKLTVKAHKFSASAAEAIDAKG 140
[Close]
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STAAR (50S ribosomal protein L15 OS=Staphylococcus aureus (strain MRSA252) GN=rplO PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.138e-20
Identity = 58/131 (44.27%), Postives = 78/131 (59.54%), Query Frame = -3 
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRG+A G G + G G +GQK+R G GVR GFEGGQ+PL+RR+PK     G  +    +Y  VNL  +    F +G EV+   L + G++    +  K  +KILG+G L KKL  KA  FS SA E ++A G
Sbjct:   20 GRGVATGNGKTSGRGHKGQKARSGGGVRPGFEGGQLPLFRRLPK----RGFTNINRKEYAIVNLDQLNK--FEDGTEVTPALLVESGVV----KNEKSGIKILGNGSLDKKLTVKAHKFSASAAEAIDAKG 140
[Close]
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STAAN (50S ribosomal protein L15 OS=Staphylococcus aureus (strain N315) GN=rplO PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.138e-20
Identity = 58/131 (44.27%), Postives = 78/131 (59.54%), Query Frame = -3 
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRG+A G G + G G +GQK+R G GVR GFEGGQ+PL+RR+PK     G  +    +Y  VNL  +    F +G EV+   L + G++    +  K  +KILG+G L KKL  KA  FS SA E ++A G
Sbjct:   20 GRGVATGNGKTSGRGHKGQKARSGGGVRPGFEGGQLPLFRRLPK----RGFTNINRKEYAIVNLDQLNK--FEDGTEVTPALLVESGVV----KNEKSGIKILGNGSLDKKLTVKAHKFSASAAEAIDAKG 140
[Close]
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STAAM (50S ribosomal protein L15 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rplO PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.138e-20
Identity = 58/131 (44.27%), Postives = 78/131 (59.54%), Query Frame = -3 
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRG+A G G + G G +GQK+R G GVR GFEGGQ+PL+RR+PK     G  +    +Y  VNL  +    F +G EV+   L + G++    +  K  +KILG+G L KKL  KA  FS SA E ++A G
Sbjct:   20 GRGVATGNGKTSGRGHKGQKARSGGGVRPGFEGGQLPLFRRLPK----RGFTNINRKEYAIVNLDQLNK--FEDGTEVTPALLVESGVV----KNEKSGIKILGNGSLDKKLTVKAHKFSASAAEAIDAKG 140
The following BLAST results are available for this feature:
BLAST of CF835984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL15_STRP81.138e-2043.8050S ribosomal protein L15 OS=Streptococcus pyogene... [more]
RL15_STRP61.138e-2043.8050S ribosomal protein L15 OS=Streptococcus pyogene... [more]
RL15_STRP31.138e-2043.8050S ribosomal protein L15 OS=Streptococcus pyogene... [more]
RL15_STRP11.138e-2043.8050S ribosomal protein L15 OS=Streptococcus pyogene... [more]
RL15_STAAW1.138e-2044.2750S ribosomal protein L15 OS=Staphylococcus aureus... [more]
RL15_STAAT1.138e-2044.2750S ribosomal protein L15 OS=Staphylococcus aureus... [more]
RL15_STAAS1.138e-2044.2750S ribosomal protein L15 OS=Staphylococcus aureus... [more]
RL15_STAAR1.138e-2044.2750S ribosomal protein L15 OS=Staphylococcus aureus... [more]
RL15_STAAN1.138e-2044.2750S ribosomal protein L15 OS=Staphylococcus aureus... [more]
RL15_STAAM1.138e-2044.2750S ribosomal protein L15 OS=Staphylococcus aureus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02D20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835984 ID=CF835984; Name=CF835984; organism=Citrus sinensis; type=EST; length=806bp
TTTTTTTTTTTTTTTCAATCAATGGTGATCTAATCAACATAATACCTGTA
GATTTGGCTTTCCAGCTAAGTAACATGAGAATCAGAACATTGAGAGTTTA
GCTGAATTTTTAAAAGGGAGGGGATACAAAGAAGAGACAAATTCCAGAAA
TTACAGCTATAGACATCCTCCTCTCATTTCGCTACCCCGAAAACCTAAAA
CCAGAGAAAAAGAATCGAAGACAATTCAATGGCTCTACTTAGTTACAGTG
AGTGAAAAAAACCAAGTGGTTCAAGCTGAAGTTGAATCGGATGCAGCTGC
AGCAGCTCTCTTCTTGGCGAAGTATTCTTCAGCTCGTGCAAGGTTCTTAG
CTACTGATGGTTTCACCCACTTCTTTCGGCCAGGTAAGACAGTGAGGGTA
CAGCCTGCAGCTTCAAGCTTCTCCTTTGCTGATGTAGAGAAGGCACGAGC
CTTGAAGTTCAGCTTCTTGCTTAATTCTCCATCACCAAGAATCTTTAAAG
GCAGTTTCCTTTCTCTTCCTGAGGGATTGATCAAGCCCTTCTTCTTCAAA
GTCTCTAGTGAGACTTCATCCCCCTCTAGAAAACCAGCTGCTTCTATGTC
TTTCAAGTTAACAGGGACATACTTAGGTAACCCAGCATGCATACCTCCGG
CAATCCCACGGAGCTTAGGAATTCGACGATAAAGAGGCATTTGACCACCT
TCAAAACCCTTTCTAACGCCAGGACCAAACCTCGATTTCTGACCTCTCAT
TCCAAACCCACAGCTGTTACCTTGCCCAGCTGCTATTCCTCTCCCCCTTT
CTCTTC
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