CF835984

Overview
NameCF835984
Unique NameCF835984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STAAE (50S ribosomal protein L15 OS=Staphylococcus aureus (strain Newman) GN=rplO PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.138e-20
Identity = 58/131 (44.27%), Postives = 78/131 (59.54%), Query Frame = -3 
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRG+A G G + G G +GQK+R G GVR GFEGGQ+PL+RR+PK     G  +    +Y  VNL  +    F +G EV+   L + G++    +  K  +KILG+G L KKL  KA  FS SA E ++A G
Sbjct:   20 GRGVATGNGKTSGRGHKGQKARSGGGVRPGFEGGQLPLFRRLPK----RGFTNINRKEYAIVNLDQLNK--FEDGTEVTPALLVESGVV----KNEKSGIKILGNGSLDKKLTVKAHKFSASAAEAIDAKG 140
[Close]
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STAAC (50S ribosomal protein L15 OS=Staphylococcus aureus (strain COL) GN=rplO PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.138e-20
Identity = 58/131 (44.27%), Postives = 78/131 (59.54%), Query Frame = -3 
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRG+A G G + G G +GQK+R G GVR GFEGGQ+PL+RR+PK     G  +    +Y  VNL  +    F +G EV+   L + G++    +  K  +KILG+G L KKL  KA  FS SA E ++A G
Sbjct:   20 GRGVATGNGKTSGRGHKGQKARSGGGVRPGFEGGQLPLFRRLPK----RGFTNINRKEYAIVNLDQLNK--FEDGTEVTPALLVESGVV----KNEKSGIKILGNGSLDKKLTVKAHKFSASAAEAIDAKG 140
[Close]
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STAAB (50S ribosomal protein L15 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=rplO PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.138e-20
Identity = 58/131 (44.27%), Postives = 78/131 (59.54%), Query Frame = -3 
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRG+A G G + G G +GQK+R G GVR GFEGGQ+PL+RR+PK     G  +    +Y  VNL  +    F +G EV+   L + G++    +  K  +KILG+G L KKL  KA  FS SA E ++A G
Sbjct:   20 GRGVATGNGKTSGRGHKGQKARSGGGVRPGFEGGQLPLFRRLPK----RGFTNINRKEYAIVNLDQLNK--FEDGTEVTPALLVESGVV----KNEKSGIKILGNGSLDKKLTVKAHKFSASAAEAIDAKG 140
[Close]
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STAA9 (50S ribosomal protein L15 OS=Staphylococcus aureus (strain JH9) GN=rplO PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.138e-20
Identity = 58/131 (44.27%), Postives = 78/131 (59.54%), Query Frame = -3 
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRG+A G G + G G +GQK+R G GVR GFEGGQ+PL+RR+PK     G  +    +Y  VNL  +    F +G EV+   L + G++    +  K  +KILG+G L KKL  KA  FS SA E ++A G
Sbjct:   20 GRGVATGNGKTSGRGHKGQKARSGGGVRPGFEGGQLPLFRRLPK----RGFTNINRKEYAIVNLDQLNK--FEDGTEVTPALLVESGVV----KNEKSGIKILGNGSLDKKLTVKAHKFSASAAEAIDAKG 140
[Close]
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STAA8 (50S ribosomal protein L15 OS=Staphylococcus aureus (strain NCTC 8325) GN=rplO PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.138e-20
Identity = 58/131 (44.27%), Postives = 78/131 (59.54%), Query Frame = -3 
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRG+A G G + G G +GQK+R G GVR GFEGGQ+PL+RR+PK     G  +    +Y  VNL  +    F +G EV+   L + G++    +  K  +KILG+G L KKL  KA  FS SA E ++A G
Sbjct:   20 GRGVATGNGKTSGRGHKGQKARSGGGVRPGFEGGQLPLFRRLPK----RGFTNINRKEYAIVNLDQLNK--FEDGTEVTPALLVESGVV----KNEKSGIKILGNGSLDKKLTVKAHKFSASAAEAIDAKG 140
[Close]
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STAA3 (50S ribosomal protein L15 OS=Staphylococcus aureus (strain USA300) GN=rplO PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.138e-20
Identity = 58/131 (44.27%), Postives = 78/131 (59.54%), Query Frame = -3 
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRG+A G G + G G +GQK+R G GVR GFEGGQ+PL+RR+PK     G  +    +Y  VNL  +    F +G EV+   L + G++    +  K  +KILG+G L KKL  KA  FS SA E ++A G
Sbjct:   20 GRGVATGNGKTSGRGHKGQKARSGGGVRPGFEGGQLPLFRRLPK----RGFTNINRKEYAIVNLDQLNK--FEDGTEVTPALLVESGVV----KNEKSGIKILGNGSLDKKLTVKAHKFSASAAEAIDAKG 140
[Close]
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STAA2 (50S ribosomal protein L15 OS=Staphylococcus aureus (strain JH1) GN=rplO PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.138e-20
Identity = 58/131 (44.27%), Postives = 78/131 (59.54%), Query Frame = -3 
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRG+A G G + G G +GQK+R G GVR GFEGGQ+PL+RR+PK     G  +    +Y  VNL  +    F +G EV+   L + G++    +  K  +KILG+G L KKL  KA  FS SA E ++A G
Sbjct:   20 GRGVATGNGKTSGRGHKGQKARSGGGVRPGFEGGQLPLFRRLPK----RGFTNINRKEYAIVNLDQLNK--FEDGTEVTPALLVESGVV----KNEKSGIKILGNGSLDKKLTVKAHKFSASAAEAIDAKG 140
[Close]
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_STAA1 (50S ribosomal protein L15 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=rplO PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.138e-20
Identity = 58/131 (44.27%), Postives = 78/131 (59.54%), Query Frame = -3 
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRG+A G G + G G +GQK+R G GVR GFEGGQ+PL+RR+PK     G  +    +Y  VNL  +    F +G EV+   L + G++    +  K  +KILG+G L KKL  KA  FS SA E ++A G
Sbjct:   20 GRGVATGNGKTSGRGHKGQKARSGGGVRPGFEGGQLPLFRRLPK----RGFTNINRKEYAIVNLDQLNK--FEDGTEVTPALLVESGVV----KNEKSGIKILGNGSLDKKLTVKAHKFSASAAEAIDAKG 140
[Close]
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_LISMO (50S ribosomal protein L15 OS=Listeria monocytogenes GN=rplO PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.138e-20
Identity = 60/131 (45.80%), Postives = 79/131 (60.31%), Query Frame = -3 
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRG  +G G + G G +GQK+R G GVR GFEGGQ+PL+RRIPK     G  +    ++  VNL  +    F +G EV+ E L + G+I    R  K  +KIL +G + KKL  KA  FS +AKE +EAAG
Sbjct:   20 GRGTGSGNGKTSGRGHKGQKARSGGGVRLGFEGGQLPLFRRIPK----RGFTNINRKEFAIVNLDVLNR--FEDGTEVTPELLVETGII----RNEKSGIKILSNGNIEKKLTVKANKFSAAAKEAIEAAG 140
[Close]
BLAST of CF835984 vs. ExPASy Swiss-Prot
Match: RL15_LISMH (50S ribosomal protein L15 OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=rplO PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.138e-20
Identity = 60/131 (45.80%), Postives = 79/131 (60.31%), Query Frame = -3 
Query:  403 GRGIAAGQGNSCGFGMRGQKSRFGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 795
            GRG  +G G + G G +GQK+R G GVR GFEGGQ+PL+RRIPK     G  +    ++  VNL  +    F +G EV+ E L + G+I    R  K  +KIL +G + KKL  KA  FS +AKE +EAAG
Sbjct:   20 GRGTGSGNGKTSGRGHKGQKARSGGGVRLGFEGGQLPLFRRIPK----RGFTNINRKEFAIVNLDVLNR--FEDGTEVTPELLVETGII----RNEKSGIKILSNGNIEKKLTVKANKFSAAAKEAIEAAG 140
The following BLAST results are available for this feature:
BLAST of CF835984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL15_STAAE1.138e-2044.2750S ribosomal protein L15 OS=Staphylococcus aureus... [more]
RL15_STAAC1.138e-2044.2750S ribosomal protein L15 OS=Staphylococcus aureus... [more]
RL15_STAAB1.138e-2044.2750S ribosomal protein L15 OS=Staphylococcus aureus... [more]
RL15_STAA91.138e-2044.2750S ribosomal protein L15 OS=Staphylococcus aureus... [more]
RL15_STAA81.138e-2044.2750S ribosomal protein L15 OS=Staphylococcus aureus... [more]
RL15_STAA31.138e-2044.2750S ribosomal protein L15 OS=Staphylococcus aureus... [more]
RL15_STAA21.138e-2044.2750S ribosomal protein L15 OS=Staphylococcus aureus... [more]
RL15_STAA11.138e-2044.2750S ribosomal protein L15 OS=Staphylococcus aureus... [more]
RL15_LISMO1.138e-2045.8050S ribosomal protein L15 OS=Listeria monocytogene... [more]
RL15_LISMH1.138e-2045.8050S ribosomal protein L15 OS=Listeria monocytogene... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02D20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835984 ID=CF835984; Name=CF835984; organism=Citrus sinensis; type=EST; length=806bp
TTTTTTTTTTTTTTTCAATCAATGGTGATCTAATCAACATAATACCTGTA
GATTTGGCTTTCCAGCTAAGTAACATGAGAATCAGAACATTGAGAGTTTA
GCTGAATTTTTAAAAGGGAGGGGATACAAAGAAGAGACAAATTCCAGAAA
TTACAGCTATAGACATCCTCCTCTCATTTCGCTACCCCGAAAACCTAAAA
CCAGAGAAAAAGAATCGAAGACAATTCAATGGCTCTACTTAGTTACAGTG
AGTGAAAAAAACCAAGTGGTTCAAGCTGAAGTTGAATCGGATGCAGCTGC
AGCAGCTCTCTTCTTGGCGAAGTATTCTTCAGCTCGTGCAAGGTTCTTAG
CTACTGATGGTTTCACCCACTTCTTTCGGCCAGGTAAGACAGTGAGGGTA
CAGCCTGCAGCTTCAAGCTTCTCCTTTGCTGATGTAGAGAAGGCACGAGC
CTTGAAGTTCAGCTTCTTGCTTAATTCTCCATCACCAAGAATCTTTAAAG
GCAGTTTCCTTTCTCTTCCTGAGGGATTGATCAAGCCCTTCTTCTTCAAA
GTCTCTAGTGAGACTTCATCCCCCTCTAGAAAACCAGCTGCTTCTATGTC
TTTCAAGTTAACAGGGACATACTTAGGTAACCCAGCATGCATACCTCCGG
CAATCCCACGGAGCTTAGGAATTCGACGATAAAGAGGCATTTGACCACCT
TCAAAACCCTTTCTAACGCCAGGACCAAACCTCGATTTCTGACCTCTCAT
TCCAAACCCACAGCTGTTACCTTGCCCAGCTGCTATTCCTCTCCCCCTTT
CTCTTC
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