CF835985

Overview
NameCF835985
Unique NameCF835985
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_SYNR3 (50S ribosomal protein L15 OS=Synechococcus sp. (strain RCC307) GN=rplO PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.287e-26
Identity = 71/148 (47.97%), Postives = 87/148 (58.78%), Query Frame = 3
Query:  189 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 632
            L +L PQ G+          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+           ++  VN+   E A    G  V+ ++L   G++       K  LK+LGDGEL  KL   A AF+ SA+EK+EAAG
Sbjct:    5 LQSLKPQKGARRRKMRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLKHFT---LVNPKRFTVVNVG--ELAELKAGTVVTRDSLTEAGILT----SPKHALKVLGDGELKVKLTVHAAAFTASAREKIEAAG 143          
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_PROMS (50S ribosomal protein L15 OS=Prochlorococcus marinus (strain AS9601) GN=rplO PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.211e-26
Identity = 69/148 (46.62%), Postives = 90/148 (60.81%), Query Frame = 3
Query:  189 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 632
            LN L    GS          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+            +  +NL+ +    F + D V++++L  KGLI     + K PLKILG+G+++ KL  +A +F+  AK+K+E AG
Sbjct:    5 LNTLKSNSGSRKKKLRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLKHFE---IINQKNFSIINLEKLN--DFKDNDTVNIDSLVKKGLI----FKPKFPLKILGNGKINVKLKVQAHSFTKVAKQKIEDAG 143          
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_PROMA (50S ribosomal protein L15 OS=Prochlorococcus marinus GN=rplO PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.211e-26
Identity = 70/149 (46.98%), Postives = 88/149 (59.06%), Query Frame = 3
Query:  189 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFL-EGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 632
            L++L P  G+          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+      H  L       L ++ +   L EG  V+L++L   G++       K PLK+LG+G L  KL  +A AF+ SAK K+E AG
Sbjct:    6 LDSLKPNKGARKRKTRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFPLVNSKSFTLINVASLNSLKEGSTVNLDSLVKTGIVT----SPKYPLKVLGNGNLKVKLVVQAAAFTASAKTKIEGAG 144          
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_SYNS9 (50S ribosomal protein L15 OS=Synechococcus sp. (strain CC9902) GN=rplO PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.072e-25
Identity = 77/162 (47.53%), Postives = 98/162 (60.49%), Query Frame = 3
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGL--PKYVPV----NLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELS-KKLNFKARAFSTSAKEKLEAAGCTLTVL 650
            RL++L    G+          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+      H  L  PK+  V     LKD++     +G  V+L++L   G++       K PLK+LG+GEL+ K L  +A AF+TSA+ K+EAAG T   L
Sbjct:    4 RLDSLKANKGARRRKLRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFPLVNPKHFTVLNVSALKDLK-----DGATVNLDSLVKDGIVT----SPKHPLKMLGNGELTVKNLTVQASAFTTSARTKIEAAGGTCETL 150          
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_SYNSC (50S ribosomal protein L15 OS=Synechococcus sp. (strain CC9605) GN=rplO PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.401e-25
Identity = 73/157 (46.50%), Postives = 95/157 (60.51%), Query Frame = 3
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFL-EGDEVSLETLKNKGLINPS*RERKLPLKILGDGEL-SKKLNFKARAFSTSAKEKLEAAGCTLTVL 650
            RL++L    G+          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+      H  L       + ++ A   L +G  V+L++L   G++       K PLK+LG+GEL +KKL  +A AF++SA  K+EAAG T  +L
Sbjct:    4 RLDSLKSNKGARRRKLRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFPLVNPKHFTVLNVSALNDLKDGSTVNLDSLVKDGIVT----SPKHPLKMLGNGELTAKKLTVQAAAFTSSALTKIEAAGGTCDIL 150          
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_SYNPX (50S ribosomal protein L15 OS=Synechococcus sp. (strain WH8102) GN=rplO PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.322e-25
Identity = 71/151 (47.02%), Postives = 91/151 (60.26%), Query Frame = 3
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFL-EGDEVSLETLKNKGLINPS*RERKLPLKILGDGEL-SKKLNFKARAFSTSAKEKLEAAG 632
            RL +L    G+          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+      H  L       + ++ A   L +G  V+L++L   G++       K PLKILG+G+L +KKL  +A AF+ SA+ K+EAAG
Sbjct:    5 RLESLKANKGARRRKLRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFPLVNPKHFTVLNVSALNSLKDGSTVNLDSLVKDGVVT----SPKHPLKILGNGDLTAKKLTVQAAAFTASARTKIEAAG 145          
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_PROM5 (50S ribosomal protein L15 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplO PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.078e-25
Identity = 73/155 (47.10%), Postives = 91/155 (58.71%), Query Frame = 3
Query:  189 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETL-KNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 650
            LN L    GS          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+            Y  VNL  +  + F + + V++++L K K L  P     K PLKILG+G +  KL  +A AF+  A+EK+E+AG +  VL
Sbjct:    5 LNTLKSNLGSRKKKLRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLKHFE---IINQKNYSIVNLSKL--SEFKDNEIVNIDSLVKKKLLFKP-----KFPLKILGNGVVKVKLKVQAHAFTKVAQEKIESAGGSCEVL 149          
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_CYAA5 (50S ribosomal protein L15 OS=Cyanothece sp. (strain ATCC 51142) GN=rplO PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.186e-24
Identity = 68/151 (45.03%), Postives = 89/151 (58.94%), Query Frame = 3
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLR--GIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 632
            R++ + PQ GS          I+AGQG S GFGMRGQKSRSG G + GFEGGQMPLYRR+PKL+   +    H     Y  +N+  + +       EV+LE+L   GLI         PLK+LG+GEL+  L  +A  F+ SAK K+E+AG
Sbjct:    2 RIHEVNPQKGSTKRRRRIGRGISAGQGASGGFGMRGQKSRSGTGTKAGFEGGQMPLYRRVPKLKHFPLVNPSH-----YTIINVGKLNSLS--PNTEVTLESLMEVGLIT----SNDGPLKVLGNGELTVPLTVRAPKFTASAKAKIESAG 141          
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_THEEB (50S ribosomal protein L15 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplO PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.549e-24
Identity = 71/152 (46.71%), Postives = 88/152 (57.89%), Query Frame = 3
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPK---YVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 632
            R  +L PQ GS          IAAGQG S GFGMRGQKSRSG   R GFEGGQ PLYRR+PKL+      H  L K   Y  +N+  +          V++++L   G++  +    K PLK+LGDGEL+ KL   A AFS SA+ K+EAAG
Sbjct:    2 RFQDLHPQAGSRRRKRRIGRGIAAGQGASGGFGMRGQKSRSGRPTRPGFEGGQNPLYRRLPKLK------HFPLVKRKVYTTINVGRLNT--LPANSVVTVQSLLEAGILTTA----KYPLKVLGDGELNVKLEVHAAAFSGSARSKIEAAG 141          
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_PROMT (50S ribosomal protein L15 OS=Prochlorococcus marinus (strain NATL2A) GN=rplO PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.641e-24
Identity = 67/149 (44.97%), Postives = 87/149 (58.39%), Query Frame = 3
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 632
            +L +L    GS          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+            +  +N+  + A    +G  V+L+ L  +G++     + K PLKILG+G+L  KL  +A AF+ SAK K+E  G
Sbjct:    4 KLESLQSNKGSRRKKMRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLKHFP---IVNQKNFTVLNVSRLNA--LKDGTIVNLDLLVKEGILT----KPKNPLKILGNGKLEVKLTVQAAAFTASAKNKIEEVG 143          
The following BLAST results are available for this feature:
BLAST of CF835985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL15_SYNR36.287e-2647.9750S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_PROMS8.211e-2646.6250S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_PROMA8.211e-2646.9850S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_SYNS91.072e-2547.5350S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_SYNSC1.401e-2546.5050S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_SYNPX5.322e-2547.0250S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_PROM59.078e-2547.1050S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_CYAA51.186e-2445.0350S ribosomal protein L15 OS=Cyanothece sp. (strai... [more]
RL15_THEEB1.549e-2446.7150S ribosomal protein L15 OS=Thermosynechococcus e... [more]
RL15_PROMT2.641e-2444.9750S ribosomal protein L15 OS=Prochlorococcus marin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02D20_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835985 ID=CF835985; Name=CF835985; organism=Citrus sinensis; type=EST; length=661bp
GCTTTCCATCAACTCCATTCAAGGGCAATGTCAAAACCCTAATGCCAAAA
CCCCCATCAAGCCTTTGCGTCCCTCTCAAAGTCCAACAAAGAAATAAACC
ACCCCAGCTCACTGTCTTAAACCAAGCTGCTTCGGCTTCTGCTTCAGCAA
CTGTTGGTTCGGGTCCCGTTACGAATGTACGGTTCCGGTTAAATAACCTG
GGCCCACAACCGGGTTCGAGAAAGAGAGGGAAGAGAAAGGGGAGAGGAAT
AGCAGCTGGGCAAGGTAACAGCTGTGGGTTTGGAATGAGAGGTCAGAAAT
CGAGGTCTGGTCCTGGCGTTAGAAAGGGTTTTGAAGGTGGTCAAATGCCT
CTTTATCGTCGAATTCCTAAGCTCCGTGGGATTGCCGGAGGTATGCATGC
TGGGTTACCTAAGTATGTCCCTGTTAACTTGAAAGACATAGAAGCAGCTG
GTTTTCTAGAGGGGGATGAAGTCTCACTAGAGACTTTGAAGAATAAGGGC
TTGATCAATCCCTCATGAAGAGAAAGGAAACTGCCTTTAAAGATTCTTGG
TGATGGAGAATTAAGCAAGAAGCTGAACTTCAAGGCTCGTGCCTTCTCTA
CATCAGCAAAGGAGAAGCTTGAAGCTGCAGGCTGTACCCTCACTGTCTTA
CCTGGCCGAAA
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