CF835985

Overview
NameCF835985
Unique NameCF835985
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_BACA2 (50S ribosomal protein L15 OS=Bacillus amyloliquefaciens (strain FZB42) GN=rplO PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.920e-23
Identity = 67/155 (43.23%), Postives = 88/155 (56.77%), Query Frame = 3
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 650
            +L+ L P  GS          I +G G + G G +GQ +RSG GVR GFEGGQMPL++R+PK     G  +     Y  VN+  +   GF EG EV+ E L   G+I+    +    +KILG+G+L KKL  KA  FS SAKE +EAAG T  V+
Sbjct:    2 KLHELKPSEGSRKVRNRVGRGIGSGNGKTAGKGHKGQNARSGGGVRPGFEGGQMPLFQRLPK----RGFTNINRKDYAIVNVDKLN--GFAEGTEVTPELLLETGVIS----KLNAGVKILGNGKLEKKLTVKANKFSASAKEAVEAAGGTAEVI 146          
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_MOOTA (50S ribosomal protein L15 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplO PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.814e-23
Identity = 68/155 (43.87%), Postives = 92/155 (59.35%), Query Frame = 3
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 650
            RL+ L P PGS          I +G G + G G +GQK+RSG GVR+GFEGGQMPL RR+PK     G  +    K VP+N+ ++E   F     V+ E L + GL+    ++ +  +KILGDGEL+KKL  K +A S  A EK+EAAG  + V+
Sbjct:    2 RLHELHPAPGSRPRATRVGRGIGSGLGKTSGRGHKGQKARSGGGVRRGFEGGQMPLTRRLPK----RGFTNIFARKLVPINVGELER--FEPETVVTPELLHDAGLV----KQARDGVKILGDGELTKKLTVKVQAASRKAIEKIEAAGGKVEVM 146          
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_THETN (50S ribosomal protein L15 OS=Thermoanaerobacter tengcongensis GN=rplO PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.981e-23
Identity = 68/149 (45.64%), Postives = 88/149 (59.06%), Query Frame = 3
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 632
            RL++L P  GS          I +G G + G G +GQ +RSG GVR GFEGGQMPL RRIPK     G  +    +Y  VN+  +E   F +G E++ E L  KG+I    ++ K  +KILGDGEL+KKL  KA  FS SA EK++A G
Sbjct:    2 RLHDLKPAEGSTKKKKRVGRGIGSGHGKTSGRGHKGQNARSGGGVRPGFEGGQMPLTRRIPK----RGFTNIFKKEYAIVNVGTLEER-FEDGAEITPEVLIEKGII----KDVKDGVKILGDGELTKKLTVKAHKFSQSAVEKIQAVG 141          
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_GEOKA (50S ribosomal protein L15 OS=Geobacillus kaustophilus GN=rplO PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.506e-23
Identity = 65/149 (43.62%), Postives = 86/149 (57.72%), Query Frame = 3
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 632
            +L+ L P PGS          I +G G + G G +GQ +RSG GVR GFEGGQ PL+RR+PK     G  +    +Y  VNL+ +    F +G EV+ E L   G+I+    + K  +KILG G++ KKL  KA  FS SAKE +EAAG
Sbjct:    2 KLHELQPAPGSRKKAVRVGRGIGSGNGKTSGRGQKGQNARSGGGVRLGFEGGQTPLFRRLPK----RGFTNINRKEYAVVNLEKLNR--FEDGTEVTPELLLETGVIS----KLKSGVKILGKGQIEKKLTVKAHKFSASAKEAIEAAG 140          
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_FINM2 (50S ribosomal protein L15 OS=Finegoldia magna (strain ATCC 29328) GN=rplO PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.506e-23
Identity = 64/156 (41.03%), Postives = 92/156 (58.97%), Query Frame = 3
Query:  186 RLNNLGP-QPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 650
            +L+NL P + G             +G G++ G G  GQ SRSG GVR GFEGGQMPL+RR+PK     G  +    +Y  +N++D+    F +G+E++ E L N G   P+  + K  +KILGDGE++KKL  KA  F+ SA+EK+  AG  + V+
Sbjct:    2 KLHNLRPAKGGEVKARKRVGRGYGSGLGHNAGRGRDGQNSRSGGGVRPGFEGGQMPLFRRLPK----RGFKNHFAKQYAEINIRDLNC--FEDGEEITPEILANAGFFKPA--KAKDGVKILGDGEITKKLTIKANKFTKSAEEKITKAGGKVEVI 149          
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_ENTFA (50S ribosomal protein L15 OS=Enterococcus faecalis GN=rplO PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.506e-23
Identity = 64/155 (41.29%), Postives = 88/155 (56.77%), Query Frame = 3
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 650
            +L+ L P  GS           ++G G + G G +GQK+RSG GVR GFEGGQ PL+RR+PK     G  +     Y  VNL  +    F +G EV+   LK  G++    +  K  +K+L DGEL+KKL  KA  FS SA+E +EAAG ++ V+
Sbjct:    2 KLHELKPAEGSRQVRNRVGRGTSSGNGKTAGRGQKGQKARSGGGVRLGFEGGQTPLFRRLPK----RGFTNINRKDYAVVNLDTLNR--FEDGTEVTPVVLKEAGIV----KNEKAGIKVLADGELTKKLTVKAAKFSKSAQEAIEAAGGSIEVI 146          
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_BACST (50S ribosomal protein L15 OS=Bacillus stearothermophilus GN=rplO PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.506e-23
Identity = 65/149 (43.62%), Postives = 86/149 (57.72%), Query Frame = 3
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 632
            +L+ L P PGS          I +G G + G G +GQ +RSG GVR GFEGGQ PL+RR+PK     G  +    +Y  VNL+ +    F +G EV+ E L   G+I+    + K  +KILG G++ KKL  KA  FS SAKE +EAAG
Sbjct:    2 KLHELQPAPGSRKKAVRVGRGIGSGNGKTSGRGQKGQNARSGGGVRLGFEGGQTPLFRRLPK----RGFTNINRKEYAVVNLEKLNR--FEDGTEVTPELLLETGVIS----KLKSGVKILGKGQIEKKLTVKAHKFSASAKEAIEAAG 140          
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_BACP2 (50S ribosomal protein L15 OS=Bacillus pumilus (strain SAFR-032) GN=rplO PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.506e-23
Identity = 67/155 (43.23%), Postives = 88/155 (56.77%), Query Frame = 3
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 650
            +L+ L P  GS          I +G G + G G +GQ +RSG GVR GFEGGQMPL++R+PK     G  +     Y  +NL  + +  F EG EV+ E L   G I+    + K  +KILG+G+L KKL  KA  FS SAKE +EAAG T  V+
Sbjct:    2 KLHELKPSEGSRKERNRVGRGIGSGNGKTSGKGHKGQNARSGGGVRPGFEGGQMPLFQRLPK----RGFTNINRKDYAVINLDRLNS--FDEGTEVTPELLLETGAIS----KLKAGVKILGNGKLEKKLTVKANKFSASAKEAIEAAGGTAEVI 146          
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_GEOSW (50S ribosomal protein L15 OS=Geobacillus sp. (strain WCH70) GN=rplO PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.110e-22
Identity = 65/149 (43.62%), Postives = 86/149 (57.72%), Query Frame = 3
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 632
            +L+ L P PGS          I +G+G + G G +GQ +RSG GVR GFEGGQ PL+RR+PK     G  +    +Y  VNL  +    F +G EV+ E L   G+I+    + K  +KILG G++ KKL  KA  FS SAKE +EAAG
Sbjct:    2 KLHELQPAPGSRKERTRVGRGIGSGKGKTSGRGQKGQNARSGGGVRLGFEGGQTPLFRRLPK----RGFTNINRKEYAIVNLDKLNR--FEDGTEVTPELLLETGVIS----KLKSGVKILGKGQIEKKLTVKAHKFSASAKEAIEAAG 140          
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_CARHZ (50S ribosomal protein L15 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rplO PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.449e-22
Identity = 70/156 (44.87%), Postives = 88/156 (56.41%), Query Frame = 3
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPK-YVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 650
            RL++L P PGS          I +G G + G G +GQK+RSG GVR GFEGGQMPLYRR+PK      G H    K  + +N+  +    F +G  V+ E L   G+I    ++    +KILG GEL K L  KA AFS SAKEK+ AAG    VL
Sbjct:    2 RLHDLRPVPGSRQKPTRKGQGIGSGLGKTAGRGQKGQKARSGGGVRPGFEGGQMPLYRRLPK-----RGFHNKFAKEIIAINVDRLNK--FEDGTVVTPELLLETGII----KKIGDGVKILGGGELKKALTVKAHAFSESAKEKITAAGGQAEVL 146          
The following BLAST results are available for this feature:
BLAST of CF835985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL15_BACA22.920e-2343.2350S ribosomal protein L15 OS=Bacillus amyloliquefa... [more]
RL15_MOOTA3.814e-2343.8750S ribosomal protein L15 OS=Moorella thermoacetic... [more]
RL15_THETN4.981e-2345.6450S ribosomal protein L15 OS=Thermoanaerobacter te... [more]
RL15_GEOKA6.506e-2343.6250S ribosomal protein L15 OS=Geobacillus kaustophi... [more]
RL15_FINM26.506e-2341.0350S ribosomal protein L15 OS=Finegoldia magna (str... [more]
RL15_ENTFA6.506e-2341.2950S ribosomal protein L15 OS=Enterococcus faecalis... [more]
RL15_BACST6.506e-2343.6250S ribosomal protein L15 OS=Bacillus stearothermo... [more]
RL15_BACP26.506e-2343.2350S ribosomal protein L15 OS=Bacillus pumilus (str... [more]
RL15_GEOSW1.110e-2243.6250S ribosomal protein L15 OS=Geobacillus sp. (stra... [more]
RL15_CARHZ1.449e-2244.8750S ribosomal protein L15 OS=Carboxydothermus hydr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02D20_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835985 ID=CF835985; Name=CF835985; organism=Citrus sinensis; type=EST; length=661bp
GCTTTCCATCAACTCCATTCAAGGGCAATGTCAAAACCCTAATGCCAAAA
CCCCCATCAAGCCTTTGCGTCCCTCTCAAAGTCCAACAAAGAAATAAACC
ACCCCAGCTCACTGTCTTAAACCAAGCTGCTTCGGCTTCTGCTTCAGCAA
CTGTTGGTTCGGGTCCCGTTACGAATGTACGGTTCCGGTTAAATAACCTG
GGCCCACAACCGGGTTCGAGAAAGAGAGGGAAGAGAAAGGGGAGAGGAAT
AGCAGCTGGGCAAGGTAACAGCTGTGGGTTTGGAATGAGAGGTCAGAAAT
CGAGGTCTGGTCCTGGCGTTAGAAAGGGTTTTGAAGGTGGTCAAATGCCT
CTTTATCGTCGAATTCCTAAGCTCCGTGGGATTGCCGGAGGTATGCATGC
TGGGTTACCTAAGTATGTCCCTGTTAACTTGAAAGACATAGAAGCAGCTG
GTTTTCTAGAGGGGGATGAAGTCTCACTAGAGACTTTGAAGAATAAGGGC
TTGATCAATCCCTCATGAAGAGAAAGGAAACTGCCTTTAAAGATTCTTGG
TGATGGAGAATTAAGCAAGAAGCTGAACTTCAAGGCTCGTGCCTTCTCTA
CATCAGCAAAGGAGAAGCTTGAAGCTGCAGGCTGTACCCTCACTGTCTTA
CCTGGCCGAAA
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