CF835994

Overview
NameCF835994
Unique NameCF835994
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1188 contig Csv1_Contig1188:521..1179. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835994 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.461e-47
Identity = 84/145 (57.93%), Postives = 109/145 (75.17%), Query Frame = -1
Query:  186 YPCRG--KYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANEVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLM 614
            +PC    KYYGRGPIQ+++N NY + G+A+GVDL+NNPDL+ATD V+SFK+A WFWMT Q PKPSCH VI   W PS  + +AGRLPG+G+ TNIINGG+ECG      V++RIGF+  +C    +  G+NLDC+NQRP+G  L+
Sbjct:  166 WPCAAGRKYYGRGPIQISYNYNYGQAGKAIGVDLVNNPDLVATDAVISFKTAFWFWMTPQSPKPSCHNVITGGWTPSGADRSAGRLPGFGVITNIINGGVECGKGVVPQVQDRIGFYKRYCDILRVSYGNNLDCNNQRPFGSGLL 310          
BLAST of CF835994 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.102e-46
Identity = 87/158 (55.06%), Postives = 112/158 (70.89%), Query Frame = -1
Query:  198 NREVGAASSDY--GDPNYPCRG--KYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANEVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 659
            NRE G+   DY      +PC    KY+GRGPIQ+++N NY   G A+GV+LLNNPDL+A D V+SFK+A+WFWMTAQ PKPS H+VI   W PS  +   GR+PG+G+ TNIINGG+EC    N  + NRIGF+  +C   G+ PG+NLDC+NQRP+G
Sbjct:   90 NREQGSPG-DYCASSQQWPCAPGKKYFGRGPIQISYNYNYGAAGSAIGVNLLNNPDLVANDAVVSFKTALWFWMTAQQPKPSAHDVITGRWSPSVADSAPGRVPGFGVITNIINGGMECNSGSNALMDNRIGFYRRYCQILGVDPGNNLDCANQRPFG 246          
BLAST of CF835994 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.880e-46
Identity = 87/151 (57.62%), Postives = 110/151 (72.85%), Query Frame = -1
Query:  201 ASSDYGDPN--YPCRG--KYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANEVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 641
            A++DY  P+  +PC    +YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  +  AGR PG+G+ TNIINGG+ECG+  +  V +RIGF+  +C   G+  GDNLDC NQRP+
Sbjct:  115 AAADYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSPSGADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVGYGDNLDCYNQRPF 265          
BLAST of CF835994 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.188e-46
Identity = 88/151 (58.28%), Postives = 110/151 (72.85%), Query Frame = -1
Query:  201 ASSDYGDPN--YPCRG--KYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANEVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 641
            ASSDY  P+  +PC    +YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATD  + FK+AIWFWMTAQPPKPS H VI  +W PS  +  AGR+PG+G+ TNIINGGIECG+  +  V +RIGF+  +C   G+  G+NLDC +QRP+
Sbjct:  115 ASSDYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPSSHAVIAGQWSPSGADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 265          
BLAST of CF835994 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.329e-46
Identity = 83/141 (58.87%), Postives = 107/141 (75.89%), Query Frame = -1
Query:  201 NYPCRG--KYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANEVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 617
            ++PC    KYYGRGPIQLT N NY   G+A+  DL+NNPDLL+T+P +SFK+AIWFWMT Q  KPS H+VI   W PSA + +AGR+PGYG+ TNIINGGIECG+  ++ V +R+GF+  +C  FG+ PG NLDC+NQR +
Sbjct:  179 DWPCAPGKKYYGRGPIQLTHNYNYGLAGQAIKEDLINNPDLLSTNPTVSFKTAIWFWMTPQANKPSSHDVITGRWTPSAADSSAGRVPGYGVITNIINGGIECGHGQDNRVDDRVGFYKRYCQIFGVDPGGNLDCNNQRSF 319          
BLAST of CF835994 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.329e-46
Identity = 82/153 (53.59%), Postives = 108/153 (70.59%), Query Frame = -1
Query:  201 GAASSDY--GDPNYPCRG--KYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANEVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 647
            G   SDY      +PC    KYYGRGPIQ+++N NY   G+A+G +LL+NPDL+A+D  +SFK+A WFWMT Q PKPSCH V+  +W P+ N+  AGR+PGYG+ TNIINGG+ECG+  +  V +RIGF+  +C   G+  G NLDC NQRP+
Sbjct:  169 GNVGSDYCVQSSQWPCAAGKKYYGRGPIQISYNYNYGPAGQAIGSNLLSNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVMTGQWTPNGNDQAAGRVPGYGVVTNIINGGVECGHGADSRVADRIGFYKRYCDMLGVSYGANLDCYNQRPF 321          
BLAST of CF835994 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 182.956 bits (463), Expect = 1.218e-45
Identity = 87/151 (57.62%), Postives = 112/151 (74.17%), Query Frame = -1
Query:  201 ASSDYGDPN--YPCR-GK-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANEVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 641
            A+S+Y  P+  +PC  GK YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  +  AGR+PG+G+ TNI+NGGIECG+  +  V +RIGF+  +C   G+  G+NLDC +QRP+
Sbjct:  167 ATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 317          
BLAST of CF835994 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.591e-45
Identity = 82/134 (61.19%), Postives = 101/134 (75.37%), Query Frame = -1
Query:  198 KYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANEVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 599
            +YYGRGPIQLT   NY + G A+G +L+NNPDL+ATD  +SFK+AIWFWMT Q  KPS H+VII  W PSA +  A R+PGYG+ TNIINGGIECG   NDAV +RIG++  +CG   + PG+NLDC NQR +G
Sbjct:  118 RYYGRGPIQLTNRNNYEKAGTAIGQELVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGRWTPSAADQAANRVPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNVAPGENLDCYNQRNFG 251          
BLAST of CF835994 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.714e-45
Identity = 87/151 (57.62%), Postives = 111/151 (73.51%), Query Frame = -1
Query:  201 ASSDYGDPN--YPCR-GK-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANEVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 641
            A+S+Y  P+  +PC  GK YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  +  AGR+PG+G+ TNI+NGGIECG+  +  V +RIGF+  +C    +  G+NLDC NQRP+
Sbjct:  170 ATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILRVGYGNNLDCYNQRPF 320          
BLAST of CF835994 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 2.714e-45
Identity = 90/152 (59.21%), Postives = 105/152 (69.08%), Query Frame = -1
Query:  189 YGDP--NYPC-RGKYY-GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANEVNAGRLPGYGLTTNIINGGIECGYVG-NDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNL 629
            Y DP  NY C  GK Y GRGPIQL+WN NY  CG+ L + LL  P+L+ TDPV+SFK+AIWFWM  Q PKPSCH VI   W PSA ++ AGR+PGYG+ TNIINGGIECG  G N A  +RIGF+  +C   G   G NLDC  QRP+G  L
Sbjct:  182 YCDPSSNYQCVAGKQYCGRGPIQLSWNYNYGLCGDDLKLPLLQEPELVETDPVISFKTAIWFWMKPQSPKPSCHAVITGNWTPSAADLEAGRVPGYGVITNIINGGIECGQGGPNAANEDRIGFYKKYCDSLGTTYGSNLDCYQQRPFGYGL 333          
The following BLAST results are available for this feature:
BLAST of CF835994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIB_VITVI6.461e-4757.93Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHID_SOLLC1.102e-4655.06Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHIC_SECCE1.880e-4657.62Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI2_HORVU4.188e-4658.2826 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHIX_PEA9.329e-4658.87Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI1_ORYSJ9.329e-4653.59Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI1_HORVU1.218e-4557.6226 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHIQ_TOBAC1.591e-4561.19Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHIA_SECCE2.714e-4557.62Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI6_POPTR2.714e-4559.21Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E02_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835994 ID=CF835994; Name=CF835994; organism=Citrus sinensis; type=EST; length=659bp
TTTTTTTTTTTTTTTGGAGAAGACTCATTGATCCATGTTGGATCCTTTAA
ATTTAATTTACTTACAATAAGAGCGTAACAGTTTCTTTGTCCACCTACAA
GTGTGACATCTAAAGTTTTTATTAAGTAGCTTTTATTAAGCTTATTTTAC
TAAAACGCTGATCATGATGATCACATAGATTGTGCCATCAGATTAAGGCC
ATAAGGCCGTTGGTTGGAGCAATCAAGATTGTCACCAGGCTGAATCCCAA
ACTTGCCACAGAAAGTGGTAAAGAACCCAATACGGTTACGTACAGCGTCA
TTCCCAACGTAGCCACATTCAATTCCACCGTTGATTATATTTGTGGTTAG
ACCGTATCCCGGAAGCCGGCCGGCGTTTACTTCATTTGCTGATGGTTTCC
ATTCGTCGATAATGACTTCGTGGCACGATGGCTTTGGTGGCTGTGCAGTC
ATCCAGAACCAGATTGCTGACTTGAATGATAGTACTGGATCAGTGGCAAG
TAGGTCTGGATTGTTCAACAAGTCCACCCCCAAGGCTTCTCCGCACCTTA
AGTAATTGCAATTCCAAGTGAGTTGAATTGGACCTCGGCCATAGTACTTC
CCTCGACATGGATAGTTAGGATCACCGTAGTCGGACGACGCAGCACCAAC
TTCCCTATT
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