CF835994

Overview
NameCF835994
Unique NameCF835994
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1188 contig Csv1_Contig1188:521..1179. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835994 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 2.714e-45
Identity = 84/154 (54.55%), Postives = 109/154 (70.78%), Query Frame = -1
Query:  198 GAASSDYGDPN--YPCRG--KYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANEVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 647
            GAA  DY   +  +PC    KYYGRGPIQL++N NY   G+A+G DLL +PDL+A+D  +SF +A WFWMT Q PKPSCH V   +W PSA++  AGR+PGYG+ TNIINGG+ECG+  +D V +RIGF+  +C   G+    NLDC +QRP+G
Sbjct:  172 GAAGPDYCQQSAQWPCAAGKKYYGRGPIQLSYNFNYGPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTPQSPKPSCHAVATGQWTPSADDQAAGRVPGYGVITNIINGGLECGHGEDDRVADRIGFYKRYCDILGVSYDANLDCYSQRPFG 325          
BLAST of CF835994 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.545e-45
Identity = 80/135 (59.26%), Postives = 102/135 (75.56%), Query Frame = -1
Query:  201 KYYGRGPIQLTWNCNYLRCGEALGV--DLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANEVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 599
            +YYGRGPIQLT   NY R G+ +GV  DL+NNPDL+ATDP++SF++AIWFWMTAQ  KPSCH VII +W PS  +  A R+PGYG+ TNIINGG+EC    N AV +RIGF+  +CG   +  G+NLDC+NQ+ +
Sbjct:  116 RYYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of CF835994 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.630e-45
Identity = 78/139 (56.12%), Postives = 106/139 (76.26%), Query Frame = -1
Query:  198 PCRGKYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANEVNAGRLPGYGLTTNIINGGIECGY-VGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 611
            P    YYGRGPIQLT   NY   G+ALG+DL+NNPDL+++DPV++F++AIWFWMTAQ PKPSCH+VI ++W PS ++ ++GRLPGYG+ TNIINGG ECG     D  ++R+G++  +C  F +  GDN+ C +Q+PYG
Sbjct:  116 PSDPPYYGRGPIQLTHKYNYQLAGDALGLDLVNNPDLVSSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDRSSGRLPGYGMATNIINGGEECGKGYSTDNAKDRVGYYKRYCDMFRVGYGDNIACRDQKPYG 254          
BLAST of CF835994 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.298e-44
Identity = 82/132 (62.12%), Postives = 98/132 (74.24%), Query Frame = -1
Query:  201 YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANEVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 596
            YYGRGPIQLT   NY   G ALG+DL+ NPDL++TD V+SFK+AIWFWMTAQ  KPSCH+VI+  W PSA +  AGR+PGYG+ TNIINGGIECG   NDA  +RIG++  +C   G   G NLDC NQR +
Sbjct:  128 YYGRGPIQLTGQSNYQAAGNALGLDLVGNPDLVSTDAVVSFKTAIWFWMTAQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQNDANVDRIGYYKRYCDMLGAGYGSNLDCYNQRNF 259          
BLAST of CF835994 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.119e-44
Identity = 85/138 (61.59%), Postives = 105/138 (76.09%), Query Frame = -1
Query:  255 REVGAASSDYGDPN--YPCRG--KYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANEVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCG 656
            RE G+   DY  P+  +PC    KY+GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATDPV+SFKSAIWFWMT Q PKPSCH+VII  W+PSA +  A RLPG+G+ TNIINGG+ECG   +  V++RIGF+  +CG
Sbjct:  165 REQGSPG-DYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVIIGRWQPSAADRAANRLPGFGVITNIINGGLECGRGSDSRVQDRIGFYRRYCG 301          
BLAST of CF835994 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 8.732e-44
Identity = 80/132 (60.61%), Postives = 98/132 (74.24%), Query Frame = -1
Query:  201 YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANEVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 596
            +YGRGPIQLT   NY   G+A+G DL+NNPDL+ATD  +SFK+AIWFWMTAQ  KPSCH+VI  +W PSA + +A R PGYG+ TNIINGGIECG   N  V +RIGF+  +C    + PGDNLDC +QR +
Sbjct:  113 FYGRGPIQLTGQSNYDLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLDCYDQRNF 244          
BLAST of CF835994 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 8.732e-44
Identity = 78/135 (57.78%), Postives = 99/135 (73.33%), Query Frame = -1
Query:  201 KYYGRGPIQLTWNCNYLRCGEALGV--DLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANEVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 599
            +YYGRGPIQLT   NY R G+ +GV  +L+NNPDL+ATDP++SFK+AIWFWMT Q  KPSCH VII +W PS  +  A R+PGYG+ TNIING  ECG   N A  +RIGF+  +CG   +  G+NLDC+NQ+ +
Sbjct:  116 RYYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of CF835994 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.334e-43
Identity = 80/133 (60.15%), Postives = 97/133 (72.93%), Query Frame = -1
Query:  201 KYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANEVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 599
            +YYGRGPIQLT   NY + G A+  DL+NNPDL+ATD  +SFK+AIWFWMT Q  KPS H+VII  W PSA + +A R PG G+ TNIINGGIECG   N AV +RIG++  +CG   + PGDNLDC NQR +
Sbjct:  118 RYYGRGPIQLTNQNNYEKAGNAIRQDLVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNVAPGDNLDCYNQRNF 250          
BLAST of CF835994 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.106e-41
Identity = 78/132 (59.09%), Postives = 94/132 (71.21%), Query Frame = -1
Query:  201 YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANEVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 596
            YYGRGPIQLT   NY   G+A+  DL+NNPDL+ATD  +SFK+AIWFWMT Q  KPSCH+VI   W PSA + +A R+PGYG+ TNIINGGIECG   N  V +RIG++        + PGDNLDC NQR +
Sbjct:  120 YYGRGPIQLTGQSNYDLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYYRRNVSIMNVAPGDNLDCYNQRNF 251          
BLAST of CF835994 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.036e-41
Identity = 77/151 (50.99%), Postives = 97/151 (64.24%), Query Frame = -1
Query:  201 SSDYGDP----NYPCRGKYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSANEVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 638
            +SDY DP    +YPC   YYGRGP+QL WN NY  CG  LG +LL+ P+ +ATDPVLSF++A+WFWM       PSCHEVI  EW PS  ++ AGR PG+G+ TNII  G EC   G    +NRI ++  +C    + PGDNL C NQ  +
Sbjct:  154 NSDYCDPKTKSSYPCVADYYGRGPLQLRWNYNYGECGNYLGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDMLQVDPGDNLYCDNQETF 304          
The following BLAST results are available for this feature:
BLAST of CF835994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI12_ORYSJ2.714e-4554.55Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIA_SOLCI3.545e-4559.26Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHI11_ORYSJ4.630e-4556.12Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI8_ORYSJ2.298e-4462.12Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_SOLTU5.119e-4461.59Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHIB_SOLLC8.732e-4460.61Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIA_SOLLC8.732e-4457.78Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIP_TOBAC4.334e-4360.15Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHIT_PETHY3.106e-4159.09Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHI8_POPTR9.036e-4150.99Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E02_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835994 ID=CF835994; Name=CF835994; organism=Citrus sinensis; type=EST; length=659bp
TTTTTTTTTTTTTTTGGAGAAGACTCATTGATCCATGTTGGATCCTTTAA
ATTTAATTTACTTACAATAAGAGCGTAACAGTTTCTTTGTCCACCTACAA
GTGTGACATCTAAAGTTTTTATTAAGTAGCTTTTATTAAGCTTATTTTAC
TAAAACGCTGATCATGATGATCACATAGATTGTGCCATCAGATTAAGGCC
ATAAGGCCGTTGGTTGGAGCAATCAAGATTGTCACCAGGCTGAATCCCAA
ACTTGCCACAGAAAGTGGTAAAGAACCCAATACGGTTACGTACAGCGTCA
TTCCCAACGTAGCCACATTCAATTCCACCGTTGATTATATTTGTGGTTAG
ACCGTATCCCGGAAGCCGGCCGGCGTTTACTTCATTTGCTGATGGTTTCC
ATTCGTCGATAATGACTTCGTGGCACGATGGCTTTGGTGGCTGTGCAGTC
ATCCAGAACCAGATTGCTGACTTGAATGATAGTACTGGATCAGTGGCAAG
TAGGTCTGGATTGTTCAACAAGTCCACCCCCAAGGCTTCTCCGCACCTTA
AGTAATTGCAATTCCAAGTGAGTTGAATTGGACCTCGGCCATAGTACTTC
CCTCGACATGGATAGTTAGGATCACCGTAGTCGGACGACGCAGCACCAAC
TTCCCTATT
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