CF835994

Overview
NameCF835994
Unique NameCF835994
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1188 contig Csv1_Contig1188:521..1179. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835994 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 2.907e-39
Identity = 73/127 (57.48%), Postives = 90/127 (70.87%), Query Frame = -1
Query:  186 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANEVNAGRLPGYGLTTNIINGGIECGYVG-NDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLM 563
            N NY  CG+ L + LL  P+L+ TDP ++FK+A+WFWMT Q PKPSCH VI + W PSA +  AGR+PGYG+ TNIINGGIECG  G N+A  NRIGF+ T+C   G   G NLDC  QRP+G  L+
Sbjct:  171 NYNYGLCGDDLNLPLLQEPELVETDPFIAFKTALWFWMTPQSPKPSCHAVITESWTPSAADSEAGRVPGYGVITNIINGGIECGQGGPNNANENRIGFYKTYCDSLGTTYGSNLDCYQQRPFGYGLL 297          
BLAST of CF835994 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.958e-39
Identity = 74/155 (47.74%), Postives = 105/155 (67.74%), Query Frame = -1
Query:  201 EVGAASS--DYGDPNYPCR-GK-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANEVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 653
            E+   SS  D  D  +PC  GK Y+GRGPIQ++WN NY   G+ALG D L NP+++A    ++F++A+WFWMT +  KPSCH+V++ E++P   +V A R  G+GL TNI+NGG+EC   G+  V NRIGF+  +C   G+  G NLDC +Q+P+
Sbjct:  136 EINPQSSYCDATDKQWPCYPGKSYHGRGPIQISWNFNYGPAGQALGFDGLRNPEIVANCSDIAFQTALWFWMTPRDTKPSCHQVMVGEYRPGPADVAANRTAGFGLVTNIVNGGLECNRAGDARVNNRIGFYRRYCQVLGVDVGPNLDCEHQQPF 290          
BLAST of CF835994 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.160e-38
Identity = 76/163 (46.63%), Postives = 110/163 (67.48%), Query Frame = -1
Query:  183 REVGAASSDYGDPN--YPCR-GK-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQ-PPKPSCHEVIIDEWKPSANEVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMA 656
            +EV  A+SD+  PN  +PC  GK Y+ RGP+Q+ +N NY   GEA+G DLL NP+L+ATDP ++FK+A+W WMTA+ P +PS H V+  +W P+  +  AGR PGYGLTTNI+ GG++C   G +   +R+ F+  +C   G+  G NLDC  Q P+  ++M+
Sbjct:  175 KEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQC--AGGNGGADRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGDIMS 335          
BLAST of CF835994 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.351e-38
Identity = 76/163 (46.63%), Postives = 109/163 (66.87%), Query Frame = -1
Query:  183 REVGAASSDYGDPN--YPCR-GK-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQ-PPKPSCHEVIIDEWKPSANEVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMA 656
            +EV  A+SD+  PN  +PC  GK Y+ RGP+Q+ +N NY   GEA+G DLL NP+L+ATDP ++FK+A+W WMTA+ P +PS H V+  +W P+  +  AGR PGYGLTTNI+ GG++C   G +   +R+ F+  +C   G+  G NLDC  Q P+   +M+
Sbjct:  175 KEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQC--AGGNGGADRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGGIMS 335          
BLAST of CF835994 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.916e-37
Identity = 69/132 (52.27%), Postives = 92/132 (69.70%), Query Frame = -1
Query:  201 YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANEVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 596
            Y+GRGPIQ+++N NY   G+A+GVDLL NPDL+ +D  + FK+A+WFWMT Q PKPS H+VI   W PS+ +  AGR+PGYG+ TNII+GG+ECG      V +RIG++            DNLDC NQ+P+
Sbjct:   79 YFGRGPIQISYNYNYGAAGKAIGVDLLRNPDLVTSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECGKGQESHVADRIGYYK-----------DNLDCYNQKPF 199          
BLAST of CF835994 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.822e-26
Identity = 63/148 (42.57%), Postives = 80/148 (54.05%), Query Frame = -1
Query:  219 EVGAASSDYGDP-NYPCRG--KYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANEVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 653
            +VG A  D      YPC    KYYGRGP+QL+WN NY   G+A+G D L NP+ +ATD   SFK+A+WFWMT      + H V+                 G+G TT  ING +EC     D   +RI F+  +C  FG+ PGDNL C
Sbjct:  162 DVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNYALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMT------NVHSVMNQ---------------GFGATTKAINGALECNGQNQDQANDRIQFYKKYCADFGVAPGDNLTC 288          
BLAST of CF835994 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.822e-26
Identity = 60/150 (40.00%), Postives = 82/150 (54.67%), Query Frame = -1
Query:  219 EVGAASSDYGDPN---YPCRG--KYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANEVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 653
            E+  AS DY D N   +PC+   KYYGRGP+Q++WN NY   G+ +G D L +PD +A DP +SFK+A+WFWM                     N V+   L G+G T   ING +EC      AV  R+ ++  +C +FG+ PG NL C
Sbjct:  160 EINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNYGPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWM---------------------NNVHQVMLQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVDPGGNLYC 288          
BLAST of CF835994 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.549e-24
Identity = 57/150 (38.00%), Postives = 81/150 (54.00%), Query Frame = -1
Query:  219 EVGAASSDYGDPN---YPCRG--KYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANEVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 653
            E+  A+ DY D +   +PC+   KYYGRGP+Q++WN NY   G+ +G D L +PD +A DP +SFK+A+WFWM                     N V+     G+G T   ING +EC      AV  R+ ++  +C +FG+ PG NL C
Sbjct:  157 EINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWM---------------------NNVHQVMSQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVSPGGNLYC 285          
BLAST of CF835994 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.022e-24
Identity = 59/150 (39.33%), Postives = 87/150 (58.00%), Query Frame = -1
Query:  219 EVGAASSDYGDPN---YPCR-GK-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANEVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 653
            E+  AS DY D N   YPC  GK Y+GRGPIQL+WN NY  CG++L ++LL  P+L++++P ++F++ +WFWM +               +P  N+       G+G T   IN G+EC    + AV  RI ++  +CG+ G+ PG NL C
Sbjct:  141 EINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSV--------------RPVLNQ-------GFGATIRAIN-GMECNGGNSGAVNARIRYYRDYCGQLGVDPGPNLSC 268          
BLAST of CF835994 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.814e-23
Identity = 52/134 (38.81%), Postives = 79/134 (58.96%), Query Frame = -1
Query:  219 YPCRG--KYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANEVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 614
            YPC    +Y+GRGP+QL+WN NY+  G+ L  D LN+PD++  DP++SFK+++WFW+     +     VI+D   P+          G+G T  IINGG EC       +  R+G++  +C + G+ PG+NL C
Sbjct:  134 YPCNPNKEYFGRGPMQLSWNYNYIDAGKELHFDGLNDPDIVGRDPIISFKTSLWFWI-----RKGVQYVILD---PN---------QGFGATIRIINGGQECDGHNTAQMMARVGYYQEYCAQLGVSPGNNLPC 250          
The following BLAST results are available for this feature:
BLAST of CF835994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIB_POPTR2.907e-3957.48Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHI10_ORYSJ4.958e-3947.74Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI7_ORYSJ7.160e-3846.63Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI9.351e-3846.63Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHIT_AVESA7.916e-3752.27Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHIP_BETVU2.822e-2642.57Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHI5_ORYSJ2.822e-2640.00Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_ORYSJ1.549e-2438.00Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_BRANA2.022e-2439.33Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHIT_DIOJA3.814e-2338.81Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E02_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835994 ID=CF835994; Name=CF835994; organism=Citrus sinensis; type=EST; length=659bp
TTTTTTTTTTTTTTTGGAGAAGACTCATTGATCCATGTTGGATCCTTTAA
ATTTAATTTACTTACAATAAGAGCGTAACAGTTTCTTTGTCCACCTACAA
GTGTGACATCTAAAGTTTTTATTAAGTAGCTTTTATTAAGCTTATTTTAC
TAAAACGCTGATCATGATGATCACATAGATTGTGCCATCAGATTAAGGCC
ATAAGGCCGTTGGTTGGAGCAATCAAGATTGTCACCAGGCTGAATCCCAA
ACTTGCCACAGAAAGTGGTAAAGAACCCAATACGGTTACGTACAGCGTCA
TTCCCAACGTAGCCACATTCAATTCCACCGTTGATTATATTTGTGGTTAG
ACCGTATCCCGGAAGCCGGCCGGCGTTTACTTCATTTGCTGATGGTTTCC
ATTCGTCGATAATGACTTCGTGGCACGATGGCTTTGGTGGCTGTGCAGTC
ATCCAGAACCAGATTGCTGACTTGAATGATAGTACTGGATCAGTGGCAAG
TAGGTCTGGATTGTTCAACAAGTCCACCCCCAAGGCTTCTCCGCACCTTA
AGTAATTGCAATTCCAAGTGAGTTGAATTGGACCTCGGCCATAGTACTTC
CCTCGACATGGATAGTTAGGATCACCGTAGTCGGACGACGCAGCACCAAC
TTCCCTATT
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