CF835997

Overview
NameCF835997
Unique NameCF835997
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835997_ssr584 microsatellite CF835997_ssr584:584..595. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1143 contig Csv1_Contig1143:1..749. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 5.156e-33
Identity = 67/122 (54.92%), Postives = 91/122 (74.59%), Query Frame = -2
Query:   47 SLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 412
            SLYVGDL  +VT++ L++  S  G ++S+RVCRD+ TRRSLGYAYVN+  PADA RALD +NF  +  + +RI     DPS+R++G   I I+NLDKS+ +KAL DTFS+FG+ILSC++  D
Sbjct:   12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD 133          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABP_PHANO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Phaeosphaeria nodorum GN=PAB1 PE=3 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 6.734e-33
Identity = 66/124 (53.23%), Postives = 91/124 (73.39%), Query Frame = -2
Query:   47 ATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 418
            + SLYVG+LD +VT++ LF+L S +GQV S+RVCRD  TRRSLGYAYVNY    D  +AL+ LN+T +  K  RI     DP++R+TG   + I+NLD ++ +KAL DTF++FG+ILSC++A D
Sbjct:   47 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQD 170          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.795e-33
Identity = 69/140 (49.29%), Postives = 99/140 (70.71%), Query Frame = -2
Query:   47 SGRNGEAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 466
            +G     A A+ N    TSLYVG+LD +VT++ LF++ S++G V S+RVCRD  TRRSLGYAYVN+ + AD  RA++ LN++ + N+  RI     DP++R TG   I I+NLD  + +KAL DTF++FG+ILSC++AT+
Sbjct:   34 NGEQRNNADAANN----TSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQLNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVATN 169          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.795e-33
Identity = 67/122 (54.92%), Postives = 90/122 (73.77%), Query Frame = -2
Query:   47 SLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 412
            SLYVGDL  + T++ L++  S  G ++S+RVCRD+ TRRSLGYAYVN+  PADA RALD +NF  +  K +RI     DPS+R++G   I I+NLDKS+ +KAL DTFS+FG+ILSC++  D
Sbjct:   12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD 133          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.149e-32
Identity = 69/136 (50.74%), Postives = 97/136 (71.32%), Query Frame = -2
Query:   38 ASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD--GSR 439
            A+G      SLYVGDL  +VT++ L++  S  G ++S+RVCRD++TRRSLGYAY+N+  PADA RALD +NF  +  + IRI     DP +R++G   + I+NLD+S+ +KAL DTFS+FG+ILSC++  D  GSR
Sbjct:    3 ATGAGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSR 138          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABP_NEUCR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neurospora crassa GN=pab-1 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.500e-32
Identity = 66/124 (53.23%), Postives = 92/124 (74.19%), Query Frame = -2
Query:   47 ATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 418
            + SLYVG+LD +VT++ LF+L S +G V S+RVCRD  TRRSLGYAYVNY   AD  +AL+ LN+T +  +  RI     DP++R+TG+  I I+NLD ++ +KAL DTF++FG+ILSC++A D
Sbjct:   59 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD 182          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABP_MAGGR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe grisea GN=PAB1 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.959e-32
Identity = 66/130 (50.77%), Postives = 94/130 (72.31%), Query Frame = -2
Query:   29 ATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATDGSRESQ 418
            + SLYVG+LD +VT++ LF+L S +G V S+RVCRD  TRRSLGYAYVNY   AD  +AL+ LN+T +  +  RI     DP++R+TG   + I+NLD ++ +KAL DTF++FG+ILSC++A D +  S+
Sbjct:   60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSK 189          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.959e-32
Identity = 72/129 (55.81%), Postives = 94/129 (72.87%), Query Frame = -2
Query:   29 TSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATDGSRESQ 415
            +SLY GDLD  VT++ LFDL   V  VVSVRVCRD   RRSLGYAY+N+ +P DA RA++ LN+TPL ++ IRI   + DPS R +G   I I+NLD S+ +KAL +TFSSFG+ILSC++A D +  S+
Sbjct:   49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSK 176          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABP_CHAGB (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Chaetomium globosum GN=PAB1 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.342e-32
Identity = 65/130 (50.00%), Postives = 94/130 (72.31%), Query Frame = -2
Query:   29 ATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATDGSRESQ 418
            + SLYVG+LD +VT++ LF+L S +G V S+RVCRD  TRRSLGYAYVNY   +D  +AL+ LN+T +  +  RI     DP++R+TG   + I+NLD ++ +KAL DTF++FG+ILSC++A D +  S+
Sbjct:   64 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSK 193          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABP_SCHPO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Schizosaccharomyces pombe GN=pab1 PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 5.701e-32
Identity = 67/133 (50.38%), Postives = 93/133 (69.92%), Query Frame = -2
Query:   47 AGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 445
            A  SG    + SLYVG+LD +VT++ LF+L + +G V S+RVCRD  TRRSLGYAYVN+ +  D  +ALD LN+T +  +  RI     DPS+R+ G+  + I+NLD ++ +KAL DTFS+FG ILSC++A D
Sbjct:   70 ATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD 202          
The following BLAST results are available for this feature:
BLAST of CF835997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
PABPA_XENLA5.156e-3354.92Polyadenylate-binding protein 1-A OS=Xenopus laevi... [more]
PABP_PHANO6.734e-3353.23Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_USTMA8.795e-3349.29Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP1_PONAB8.795e-3354.92Polyadenylate-binding protein 1 OS=Pongo abelii GN... [more]
EPAB_XENTR1.149e-3250.74Embryonic polyadenylate-binding protein OS=Xenopus... [more]
PABP_NEUCR1.500e-3253.23Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_MAGGR1.959e-3250.77Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP3_ARATH1.959e-3255.81Polyadenylate-binding protein 3 OS=Arabidopsis tha... [more]
PABP_CHAGB3.342e-3250.00Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_SCHPO5.701e-3250.38Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E03_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835997 ID=CF835997; Name=CF835997; organism=Citrus sinensis; type=EST; length=749bp
ACGTAAAAGATCATTTTTCTAGTAGTGCTTGGGACTCGCGAGAACCATCA
GTAGCTATCTCACAAGAAAGAATGCTCCCAAATGAAGAAAATGTATCGCG
TAATGCTTTGTGATGAACAGACTTGTCCAGATTCTCGATAAGTATGGTCG
CAGAACCGGTTTCTCGGATACTAGGATCCCCATGACATTACGTGATTCTG
ATGGACTTATTATTAAGTGGAGTGAAGTTCAGAACATCCAGTGCCCTCGC
CGCATCTGCAGGGTCGCCGTAGTTAACGTAGGCGTAGCCGAGAGAGCGCC
TGGTGCTCAGGTCTCGACAAACCCTAACCGACACGACTTGACCAACCAGG
CTCAACAGATCAAAAAGCTGCGAATCGGTTACGTTGAAATCGAGATCGCC
AACATAAAGGGACGTCGCTAGTAACCGGTTCCCTGACGCACCCGCCGCCT
CTCCGTTTCGCCCCGAGATTTGCCCTTGAAGTTGATATCAAAGAGCTCAA
GAAAACAAAGAACAGGTTGAAGCCGCAAGAAGCAGAAAAAACAGCAGCCA
CGAATTGCCTCTGGAATTGGCAGCGAAAAGCAAAGAGAGAGAGAGGGTTT
CTTTTGGATCTTTTCATTAGTCACCCTATGGTCTTAGTAATTTATTTTTT
ATGTCAAAGTTTGGACTTTTGTTGCATTTAAGTCCAACAGAATATGTGAT
TTAAGGTTTTTGGTTTCTATCCCATGGCACCCCATGGTTTCATTATTTT
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