CF835997
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3) HSP 1 Score: 141.354 bits (355), Expect = 5.156e-33 Identity = 67/122 (54.92%), Postives = 91/122 (74.59%), Query Frame = -2 Query: 47 SLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 412 SLYVGDL +VT++ L++ S G ++S+RVCRD+ TRRSLGYAYVN+ PADA RALD +NF + + +RI DPS+R++G I I+NLDKS+ +KAL DTFS+FG+ILSC++ D Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD 133
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABP_PHANO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Phaeosphaeria nodorum GN=PAB1 PE=3 SV=3) HSP 1 Score: 140.969 bits (354), Expect = 6.734e-33 Identity = 66/124 (53.23%), Postives = 91/124 (73.39%), Query Frame = -2 Query: 47 ATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 418 + SLYVG+LD +VT++ LF+L S +GQV S+RVCRD TRRSLGYAYVNY D +AL+ LN+T + K RI DP++R+TG + I+NLD ++ +KAL DTF++FG+ILSC++A D Sbjct: 47 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQD 170
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 8.795e-33 Identity = 69/140 (49.29%), Postives = 99/140 (70.71%), Query Frame = -2 Query: 47 SGRNGEAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 466 +G A A+ N TSLYVG+LD +VT++ LF++ S++G V S+RVCRD TRRSLGYAYVN+ + AD RA++ LN++ + N+ RI DP++R TG I I+NLD + +KAL DTF++FG+ILSC++AT+ Sbjct: 34 NGEQRNNADAANN----TSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQLNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVATN 169
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 8.795e-33 Identity = 67/122 (54.92%), Postives = 90/122 (73.77%), Query Frame = -2 Query: 47 SLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 412 SLYVGDL + T++ L++ S G ++S+RVCRD+ TRRSLGYAYVN+ PADA RALD +NF + K +RI DPS+R++G I I+NLDKS+ +KAL DTFS+FG+ILSC++ D Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD 133
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 1.149e-32 Identity = 69/136 (50.74%), Postives = 97/136 (71.32%), Query Frame = -2 Query: 38 ASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD--GSR 439 A+G SLYVGDL +VT++ L++ S G ++S+RVCRD++TRRSLGYAY+N+ PADA RALD +NF + + IRI DP +R++G + I+NLD+S+ +KAL DTFS+FG+ILSC++ D GSR Sbjct: 3 ATGAGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSR 138
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABP_NEUCR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neurospora crassa GN=pab-1 PE=3 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.500e-32 Identity = 66/124 (53.23%), Postives = 92/124 (74.19%), Query Frame = -2 Query: 47 ATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 418 + SLYVG+LD +VT++ LF+L S +G V S+RVCRD TRRSLGYAYVNY AD +AL+ LN+T + + RI DP++R+TG+ I I+NLD ++ +KAL DTF++FG+ILSC++A D Sbjct: 59 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD 182
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABP_MAGGR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe grisea GN=PAB1 PE=3 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 1.959e-32 Identity = 66/130 (50.77%), Postives = 94/130 (72.31%), Query Frame = -2 Query: 29 ATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATDGSRESQ 418 + SLYVG+LD +VT++ LF+L S +G V S+RVCRD TRRSLGYAYVNY AD +AL+ LN+T + + RI DP++R+TG + I+NLD ++ +KAL DTF++FG+ILSC++A D + S+ Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSK 189
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 1.959e-32 Identity = 72/129 (55.81%), Postives = 94/129 (72.87%), Query Frame = -2 Query: 29 TSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATDGSRESQ 415 +SLY GDLD VT++ LFDL V VVSVRVCRD RRSLGYAY+N+ +P DA RA++ LN+TPL ++ IRI + DPS R +G I I+NLD S+ +KAL +TFSSFG+ILSC++A D + S+ Sbjct: 49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSK 176
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABP_CHAGB (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Chaetomium globosum GN=PAB1 PE=3 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 3.342e-32 Identity = 65/130 (50.00%), Postives = 94/130 (72.31%), Query Frame = -2 Query: 29 ATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATDGSRESQ 418 + SLYVG+LD +VT++ LF+L S +G V S+RVCRD TRRSLGYAYVNY +D +AL+ LN+T + + RI DP++R+TG + I+NLD ++ +KAL DTF++FG+ILSC++A D + S+ Sbjct: 64 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSK 193
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABP_SCHPO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Schizosaccharomyces pombe GN=pab1 PE=1 SV=2) HSP 1 Score: 137.887 bits (346), Expect = 5.701e-32 Identity = 67/133 (50.38%), Postives = 93/133 (69.92%), Query Frame = -2 Query: 47 AGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 445 A SG + SLYVG+LD +VT++ LF+L + +G V S+RVCRD TRRSLGYAYVN+ + D +ALD LN+T + + RI DPS+R+ G+ + I+NLD ++ +KAL DTFS+FG ILSC++A D Sbjct: 70 ATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD 202 The following BLAST results are available for this feature:
BLAST of CF835997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835997 ID=CF835997; Name=CF835997; organism=Citrus sinensis; type=EST; length=749bpback to top |