CF835997
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABP_DEBHA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii GN=PAB1 PE=3 SV=2) HSP 1 Score: 127.487 bits (319), Expect = 7.705e-29 Identity = 63/140 (45.00%), Postives = 94/140 (67.14%), Query Frame = -2 Query: 47 SGRNGEAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 466 SG EAA ++ + SLYVG+L+ +V ++ LF++ S +GQV S+RVCRD T++SLGYAYVN+ D +A++ LN++ + + RI DPS+R G I I+NL ++ +KAL DTF++FG ILSC++ATD Sbjct: 34 SGETEEAADSAQVSDTSASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGKILSCKVATD 173
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 1.006e-28 Identity = 64/146 (43.84%), Postives = 93/146 (63.70%), Query Frame = -2 Query: 29 SGRNGEAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATDGSRESQ 466 S EA+ S SLYVG+LD N+T++ L+D+ S +G + S+RVCRD T+ SLGYAYVNY D +A+ LN+ +N + RI DP+IR+ GS I I+NL ++ +KAL +TFS+FG +LSC++A D + S+ Sbjct: 33 SASESEASSVSKVENNNASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSR 178
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2) HSP 1 Score: 122.865 bits (307), Expect = 1.898e-27 Identity = 59/122 (48.36%), Postives = 83/122 (68.03%), Query Frame = -2 Query: 47 SLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 412 SLYVGDL +VT++ L++ S G ++S+R+CRDL T S YAYVN+ DA ALD +NF + K +RI DPS+R++G I ++NLDKS+++KAL DT S+FG+ILSC + D Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCD 133
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABP_ASHGO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii GN=PAB1 PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 2.479e-27 Identity = 59/122 (48.36%), Postives = 86/122 (70.49%), Query Frame = -2 Query: 47 SLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 412 SLYVG+L+ V+++ L+D+ S +G V S+RVCRD T SLGYAYVN+ D +A++ LN+T + K RI DPS+R+ GS I I+NL ++ +K+L +TFS+FG+ILSC++ATD Sbjct: 39 SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVATD 160
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 4.228e-27 Identity = 62/122 (50.82%), Postives = 83/122 (68.03%), Query Frame = -2 Query: 47 SLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 412 SLYVGDL +VT+ LF S VG V+S+R+CRD TRRSLGYAYVN+ ADA +ALD +NF + KSIR+ D +R +G + I+NLDKS+ +K L + FS+FG ILS ++ +D Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD 132
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PAP1B_DICDI (Polyadenylate-binding protein 1-B OS=Dictyostelium discoideum GN=pabpc1B PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 7.973e-26 Identity = 68/148 (45.95%), Postives = 93/148 (62.84%), Query Frame = -2 Query: 56 GEAAGASGNRLLA-------------TSLYVGDLDFNVTDSQLFDLLSLVGQ--VVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEI 454 G AGA+G +L+ TSLYVGDL +V + L +L S VG+ + S+ VCRD +T RSLGYAYVN+ + DA RALD LN+T ++ K RI + DP+ R+T I ++NL+K V + L DTFSSFG+ILSC++ Sbjct: 158 GAGAGAAGMPILSMSPIGAYQPPHQLTSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERALDTLNYTLVHGKPCRIMWSYRDPTKRKTNVGNIFVKNLEKGVDNAMLYDTFSSFGNILSCKV 305
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABP5_PONPY (Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.171e-23 Identity = 56/127 (44.09%), Postives = 79/127 (62.20%), Query Frame = -2 Query: 47 RLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 427 + L +LYVGDLD +VT+ L+ G + R+CRD TR LGY YVN+ PADA AL+ +NF +N K R+ D +R++G I I+NLDKS+ ++AL FS+FG+ILSC++ D Sbjct: 14 KYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD 140
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABP5_PANTR (Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.171e-23 Identity = 56/127 (44.09%), Postives = 79/127 (62.20%), Query Frame = -2 Query: 47 RLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 427 + L +LYVGDLD +VT+ L+ G + R+CRD TR LGY YVN+ PADA AL+ +NF +N K R+ D +R++G I I+NLDKS+ ++AL FS+FG+ILSC++ D Sbjct: 14 KYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD 140
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABP5_MACMU (Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.171e-23 Identity = 56/127 (44.09%), Postives = 79/127 (62.20%), Query Frame = -2 Query: 47 RLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 427 + L +LYVGDLD +VT+ L+ G + R+CRD TR LGY YVN+ PADA AL+ +NF +N K R+ D +R++G I I+NLDKS+ ++AL FS+FG+ILSC++ D Sbjct: 14 KYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD 140
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABP5_HYLLA (Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.171e-23 Identity = 56/127 (44.09%), Postives = 79/127 (62.20%), Query Frame = -2 Query: 47 RLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 427 + L +LYVGDLD +VT+ L+ G + R+CRD TR LGY YVN+ PADA AL+ +NF +N K R+ D +R++G I I+NLDKS+ ++AL FS+FG+ILSC++ D Sbjct: 14 KYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD 140 The following BLAST results are available for this feature:
BLAST of CF835997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835997 ID=CF835997; Name=CF835997; organism=Citrus sinensis; type=EST; length=749bpback to top |