CF835997

Overview
NameCF835997
Unique NameCF835997
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835997_ssr584 microsatellite CF835997_ssr584:584..595. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1143 contig Csv1_Contig1143:1..749. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABP_DEBHA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 7.705e-29
Identity = 63/140 (45.00%), Postives = 94/140 (67.14%), Query Frame = -2
Query:   47 SGRNGEAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 466
            SG   EAA ++     + SLYVG+L+ +V ++ LF++ S +GQV S+RVCRD  T++SLGYAYVN+    D  +A++ LN++ +  +  RI     DPS+R  G   I I+NL  ++ +KAL DTF++FG ILSC++ATD
Sbjct:   34 SGETEEAADSAQVSDTSASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGKILSCKVATD 173          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.006e-28
Identity = 64/146 (43.84%), Postives = 93/146 (63.70%), Query Frame = -2
Query:   29 SGRNGEAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATDGSRESQ 466
            S    EA+  S       SLYVG+LD N+T++ L+D+ S +G + S+RVCRD  T+ SLGYAYVNY D     +A+  LN+  +N +  RI     DP+IR+ GS  I I+NL  ++ +KAL +TFS+FG +LSC++A D +  S+
Sbjct:   33 SASESEASSVSKVENNNASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSR 178          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.898e-27
Identity = 59/122 (48.36%), Postives = 83/122 (68.03%), Query Frame = -2
Query:   47 SLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 412
            SLYVGDL  +VT++ L++  S  G ++S+R+CRDL T  S  YAYVN+    DA  ALD +NF  +  K +RI     DPS+R++G   I ++NLDKS+++KAL DT S+FG+ILSC +  D
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCD 133          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABP_ASHGO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii GN=PAB1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.479e-27
Identity = 59/122 (48.36%), Postives = 86/122 (70.49%), Query Frame = -2
Query:   47 SLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 412
            SLYVG+L+  V+++ L+D+ S +G V S+RVCRD  T  SLGYAYVN+ D     +A++ LN+T +  K  RI     DPS+R+ GS  I I+NL  ++ +K+L +TFS+FG+ILSC++ATD
Sbjct:   39 SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVATD 160          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.228e-27
Identity = 62/122 (50.82%), Postives = 83/122 (68.03%), Query Frame = -2
Query:   47 SLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 412
            SLYVGDL  +VT+  LF   S VG V+S+R+CRD  TRRSLGYAYVN+   ADA +ALD +NF  +  KSIR+     D  +R +G   + I+NLDKS+ +K L + FS+FG ILS ++ +D
Sbjct:   11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD 132          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PAP1B_DICDI (Polyadenylate-binding protein 1-B OS=Dictyostelium discoideum GN=pabpc1B PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.973e-26
Identity = 68/148 (45.95%), Postives = 93/148 (62.84%), Query Frame = -2
Query:   56 GEAAGASGNRLLA-------------TSLYVGDLDFNVTDSQLFDLLSLVGQ--VVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEI 454
            G  AGA+G  +L+             TSLYVGDL  +V +  L +L S VG+  + S+ VCRD +T RSLGYAYVN+ +  DA RALD LN+T ++ K  RI   + DP+ R+T    I ++NL+K V +  L DTFSSFG+ILSC++
Sbjct:  158 GAGAGAAGMPILSMSPIGAYQPPHQLTSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERALDTLNYTLVHGKPCRIMWSYRDPTKRKTNVGNIFVKNLEKGVDNAMLYDTFSSFGNILSCKV 305          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABP5_PONPY (Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.171e-23
Identity = 56/127 (44.09%), Postives = 79/127 (62.20%), Query Frame = -2
Query:   47 RLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 427
            + L  +LYVGDLD +VT+  L+      G +   R+CRD  TR  LGY YVN+  PADA  AL+ +NF  +N K  R+     D  +R++G   I I+NLDKS+ ++AL   FS+FG+ILSC++  D
Sbjct:   14 KYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD 140          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABP5_PANTR (Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.171e-23
Identity = 56/127 (44.09%), Postives = 79/127 (62.20%), Query Frame = -2
Query:   47 RLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 427
            + L  +LYVGDLD +VT+  L+      G +   R+CRD  TR  LGY YVN+  PADA  AL+ +NF  +N K  R+     D  +R++G   I I+NLDKS+ ++AL   FS+FG+ILSC++  D
Sbjct:   14 KYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD 140          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABP5_MACMU (Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.171e-23
Identity = 56/127 (44.09%), Postives = 79/127 (62.20%), Query Frame = -2
Query:   47 RLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 427
            + L  +LYVGDLD +VT+  L+      G +   R+CRD  TR  LGY YVN+  PADA  AL+ +NF  +N K  R+     D  +R++G   I I+NLDKS+ ++AL   FS+FG+ILSC++  D
Sbjct:   14 KYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD 140          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABP5_HYLLA (Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.171e-23
Identity = 56/127 (44.09%), Postives = 79/127 (62.20%), Query Frame = -2
Query:   47 RLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 427
            + L  +LYVGDLD +VT+  L+      G +   R+CRD  TR  LGY YVN+  PADA  AL+ +NF  +N K  R+     D  +R++G   I I+NLDKS+ ++AL   FS+FG+ILSC++  D
Sbjct:   14 KYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD 140          
The following BLAST results are available for this feature:
BLAST of CF835997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
PABP_DEBHA7.705e-2945.00Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_KLULA1.006e-2843.84Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP3_HUMAN1.898e-2748.36Polyadenylate-binding protein 3 OS=Homo sapiens GN... [more]
PABP_ASHGO2.479e-2748.36Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PAB4L_HUMAN4.228e-2750.82Polyadenylate-binding protein 4-like OS=Homo sapie... [more]
PAP1B_DICDI7.973e-2645.95Polyadenylate-binding protein 1-B OS=Dictyostelium... [more]
PABP5_PONPY2.171e-2344.09Polyadenylate-binding protein 5 OS=Pongo pygmaeus ... [more]
PABP5_PANTR2.171e-2344.09Polyadenylate-binding protein 5 OS=Pan troglodytes... [more]
PABP5_MACMU2.171e-2344.09Polyadenylate-binding protein 5 OS=Macaca mulatta ... [more]
PABP5_HYLLA2.171e-2344.09Polyadenylate-binding protein 5 OS=Hylobates lar G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E03_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835997 ID=CF835997; Name=CF835997; organism=Citrus sinensis; type=EST; length=749bp
ACGTAAAAGATCATTTTTCTAGTAGTGCTTGGGACTCGCGAGAACCATCA
GTAGCTATCTCACAAGAAAGAATGCTCCCAAATGAAGAAAATGTATCGCG
TAATGCTTTGTGATGAACAGACTTGTCCAGATTCTCGATAAGTATGGTCG
CAGAACCGGTTTCTCGGATACTAGGATCCCCATGACATTACGTGATTCTG
ATGGACTTATTATTAAGTGGAGTGAAGTTCAGAACATCCAGTGCCCTCGC
CGCATCTGCAGGGTCGCCGTAGTTAACGTAGGCGTAGCCGAGAGAGCGCC
TGGTGCTCAGGTCTCGACAAACCCTAACCGACACGACTTGACCAACCAGG
CTCAACAGATCAAAAAGCTGCGAATCGGTTACGTTGAAATCGAGATCGCC
AACATAAAGGGACGTCGCTAGTAACCGGTTCCCTGACGCACCCGCCGCCT
CTCCGTTTCGCCCCGAGATTTGCCCTTGAAGTTGATATCAAAGAGCTCAA
GAAAACAAAGAACAGGTTGAAGCCGCAAGAAGCAGAAAAAACAGCAGCCA
CGAATTGCCTCTGGAATTGGCAGCGAAAAGCAAAGAGAGAGAGAGGGTTT
CTTTTGGATCTTTTCATTAGTCACCCTATGGTCTTAGTAATTTATTTTTT
ATGTCAAAGTTTGGACTTTTGTTGCATTTAAGTCCAACAGAATATGTGAT
TTAAGGTTTTTGGTTTCTATCCCATGGCACCCCATGGTTTCATTATTTT
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