CF835997
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABP5_HUMAN (Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=1 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.171e-23 Identity = 56/127 (44.09%), Postives = 79/127 (62.20%), Query Frame = -2 Query: 47 RLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 427 + L +LYVGDLD +VT+ L+ G + R+CRD TR LGY YVN+ PADA AL+ +NF +N K R+ D +R++G I I+NLDKS+ ++AL FS+FG+ILSC++ D Sbjct: 14 KYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD 140
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABP5_GORGO (Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla GN=PABPC5 PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.171e-23 Identity = 56/127 (44.09%), Postives = 79/127 (62.20%), Query Frame = -2 Query: 47 RLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 427 + L +LYVGDLD +VT+ L+ G + R+CRD TR LGY YVN+ PADA AL+ +NF +N K R+ D +R++G I I+NLDKS+ ++AL FS+FG+ILSC++ D Sbjct: 14 KYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD 140
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABPX_ARATH (Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.535e-19 Identity = 50/134 (37.31%), Postives = 78/134 (58.21%), Query Frame = -2 Query: 50 EAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIAT 451 +A+ + + + SLYVGDL +VT+ L+D + + SVR+C+D S+ RSL Y Y N+ DA A++ N + LN K IR+ P R G + ++NL +SV + L+D F FG+I+SC++AT Sbjct: 12 DASSSGSSSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVAT 145
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: ELAV3_XENLA (ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.276e-15 Identity = 47/143 (32.87%), Postives = 78/143 (54.55%), Query Frame = -2 Query: 47 GQISGRNGEAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 475 G ++G NGEA + T+L V L N+T + L +G++ S ++ RD T +SLGY +VNY DP DA +A++ LN L K+I+++ + PS A + + +L K+++ K + FS +G I++ I D Sbjct: 20 GILNGTNGEADDSK------TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVS--YARPSSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVD 154
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: ELAV3_XENTR (ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 6.332e-15 Identity = 46/143 (32.17%), Postives = 77/143 (53.85%), Query Frame = -2 Query: 47 GQISGRNGEAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 475 G ++G NG A + T+L V L N+T + L +G++ S ++ RD T +SLGY +VNY DP DA +A++ LN L K+I+++ + PS A + + +L K+++ K + FS +G I++ I D Sbjct: 21 GILNGTNGAADDSK------TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVS--YARPSSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVD 155
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PES4_YEAST (Protein PES4 OS=Saccharomyces cerevisiae GN=PES4 PE=2 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 2.406e-14 Identity = 44/138 (31.88%), Postives = 74/138 (53.62%), Query Frame = -2 Query: 56 RNGEAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENL---DKSVHHKALRDTFSSFGSILSCEI 460 +NG+ +L+ L++GDL VT+ L + VS +VC D T++SLG+ Y+N+ D +A +A++ LN+T +N K IRI + + R+ + NL + + + DTFS +G ILSC++ Sbjct: 78 KNGKLKSFESKKLVP--LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEELNYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCKL 213
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: ELAV2_XENTR (ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 2.406e-14 Identity = 43/123 (34.96%), Postives = 68/123 (55.28%), Query Frame = -2 Query: 47 TSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 415 T+L V L N+T +L L +G++ S ++ RD T +SLGY +VNY DP DA +A++ LN L K+I+++ + PS A + + L K++ K L FS +G I++ I D Sbjct: 67 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS--YARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 187
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: ELAV2_PONAB (ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.406e-14 Identity = 43/123 (34.96%), Postives = 68/123 (55.28%), Query Frame = -2 Query: 47 TSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 415 T+L V L N+T +L L +G++ S ++ RD T +SLGY +VNY DP DA +A++ LN L K+I+++ + PS A + + L K++ K L FS +G I++ I D Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS--YARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 159
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: ELAV2_MOUSE (ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.406e-14 Identity = 43/123 (34.96%), Postives = 68/123 (55.28%), Query Frame = -2 Query: 47 TSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 415 T+L V L N+T +L L +G++ S ++ RD T +SLGY +VNY DP DA +A++ LN L K+I+++ + PS A + + L K++ K L FS +G I++ I D Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS--YARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 159
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: ELAV2_HUMAN (ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 2.406e-14 Identity = 43/123 (34.96%), Postives = 68/123 (55.28%), Query Frame = -2 Query: 47 TSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 415 T+L V L N+T +L L +G++ S ++ RD T +SLGY +VNY DP DA +A++ LN L K+I+++ + PS A + + L K++ K L FS +G I++ I D Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS--YARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 159 The following BLAST results are available for this feature:
BLAST of CF835997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835997 ID=CF835997; Name=CF835997; organism=Citrus sinensis; type=EST; length=749bpback to top |