CF835997

Overview
NameCF835997
Unique NameCF835997
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835997_ssr584 microsatellite CF835997_ssr584:584..595. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1143 contig Csv1_Contig1143:1..749. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABP5_HUMAN (Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.171e-23
Identity = 56/127 (44.09%), Postives = 79/127 (62.20%), Query Frame = -2
Query:   47 RLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 427
            + L  +LYVGDLD +VT+  L+      G +   R+CRD  TR  LGY YVN+  PADA  AL+ +NF  +N K  R+     D  +R++G   I I+NLDKS+ ++AL   FS+FG+ILSC++  D
Sbjct:   14 KYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD 140          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABP5_GORGO (Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.171e-23
Identity = 56/127 (44.09%), Postives = 79/127 (62.20%), Query Frame = -2
Query:   47 RLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 427
            + L  +LYVGDLD +VT+  L+      G +   R+CRD  TR  LGY YVN+  PADA  AL+ +NF  +N K  R+     D  +R++G   I I+NLDKS+ ++AL   FS+FG+ILSC++  D
Sbjct:   14 KYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD 140          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABPX_ARATH (Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.535e-19
Identity = 50/134 (37.31%), Postives = 78/134 (58.21%), Query Frame = -2
Query:   50 EAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIAT 451
            +A+ +  +  +  SLYVGDL  +VT+  L+D  +    + SVR+C+D S+ RSL Y Y N+    DA  A++  N + LN K IR+      P  R  G   + ++NL +SV +  L+D F  FG+I+SC++AT
Sbjct:   12 DASSSGSSSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVAT 145          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: ELAV3_XENLA (ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.276e-15
Identity = 47/143 (32.87%), Postives = 78/143 (54.55%), Query Frame = -2
Query:   47 GQISGRNGEAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 475
            G ++G NGEA  +       T+L V  L  N+T  +   L   +G++ S ++ RD  T +SLGY +VNY DP DA +A++ LN   L  K+I+++  +  PS      A + + +L K+++ K +   FS +G I++  I  D
Sbjct:   20 GILNGTNGEADDSK------TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVS--YARPSSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVD 154          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: ELAV3_XENTR (ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.332e-15
Identity = 46/143 (32.17%), Postives = 77/143 (53.85%), Query Frame = -2
Query:   47 GQISGRNGEAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 475
            G ++G NG A  +       T+L V  L  N+T  +   L   +G++ S ++ RD  T +SLGY +VNY DP DA +A++ LN   L  K+I+++  +  PS      A + + +L K+++ K +   FS +G I++  I  D
Sbjct:   21 GILNGTNGAADDSK------TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVS--YARPSSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVD 155          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PES4_YEAST (Protein PES4 OS=Saccharomyces cerevisiae GN=PES4 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.406e-14
Identity = 44/138 (31.88%), Postives = 74/138 (53.62%), Query Frame = -2
Query:   56 RNGEAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENL---DKSVHHKALRDTFSSFGSILSCEI 460
            +NG+       +L+   L++GDL   VT+  L  +       VS +VC D  T++SLG+ Y+N+ D  +A +A++ LN+T +N K IRI     + + R+     +   NL   +  +  +   DTFS +G ILSC++
Sbjct:   78 KNGKLKSFESKKLVP--LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEELNYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCKL 213          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: ELAV2_XENTR (ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.406e-14
Identity = 43/123 (34.96%), Postives = 68/123 (55.28%), Query Frame = -2
Query:   47 TSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 415
            T+L V  L  N+T  +L  L   +G++ S ++ RD  T +SLGY +VNY DP DA +A++ LN   L  K+I+++  +  PS      A + +  L K++  K L   FS +G I++  I  D
Sbjct:   67 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS--YARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 187          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: ELAV2_PONAB (ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.406e-14
Identity = 43/123 (34.96%), Postives = 68/123 (55.28%), Query Frame = -2
Query:   47 TSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 415
            T+L V  L  N+T  +L  L   +G++ S ++ RD  T +SLGY +VNY DP DA +A++ LN   L  K+I+++  +  PS      A + +  L K++  K L   FS +G I++  I  D
Sbjct:   39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS--YARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 159          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: ELAV2_MOUSE (ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.406e-14
Identity = 43/123 (34.96%), Postives = 68/123 (55.28%), Query Frame = -2
Query:   47 TSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 415
            T+L V  L  N+T  +L  L   +G++ S ++ RD  T +SLGY +VNY DP DA +A++ LN   L  K+I+++  +  PS      A + +  L K++  K L   FS +G I++  I  D
Sbjct:   39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS--YARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 159          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: ELAV2_HUMAN (ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.406e-14
Identity = 43/123 (34.96%), Postives = 68/123 (55.28%), Query Frame = -2
Query:   47 TSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 415
            T+L V  L  N+T  +L  L   +G++ S ++ RD  T +SLGY +VNY DP DA +A++ LN   L  K+I+++  +  PS      A + +  L K++  K L   FS +G I++  I  D
Sbjct:   39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS--YARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 159          
The following BLAST results are available for this feature:
BLAST of CF835997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
PABP5_HUMAN2.171e-2344.09Polyadenylate-binding protein 5 OS=Homo sapiens GN... [more]
PABP5_GORGO2.171e-2344.09Polyadenylate-binding protein 5 OS=Gorilla gorilla... [more]
PABPX_ARATH5.535e-1937.31Probable polyadenylate-binding protein At2g36660 O... [more]
ELAV3_XENLA1.276e-1532.87ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE... [more]
ELAV3_XENTR6.332e-1532.17ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl... [more]
PES4_YEAST2.406e-1431.88Protein PES4 OS=Saccharomyces cerevisiae GN=PES4 P... [more]
ELAV2_XENTR2.406e-1434.96ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl... [more]
ELAV2_PONAB2.406e-1434.96ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2... [more]
ELAV2_MOUSE2.406e-1434.96ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2... [more]
ELAV2_HUMAN2.406e-1434.96ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E03_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835997 ID=CF835997; Name=CF835997; organism=Citrus sinensis; type=EST; length=749bp
ACGTAAAAGATCATTTTTCTAGTAGTGCTTGGGACTCGCGAGAACCATCA
GTAGCTATCTCACAAGAAAGAATGCTCCCAAATGAAGAAAATGTATCGCG
TAATGCTTTGTGATGAACAGACTTGTCCAGATTCTCGATAAGTATGGTCG
CAGAACCGGTTTCTCGGATACTAGGATCCCCATGACATTACGTGATTCTG
ATGGACTTATTATTAAGTGGAGTGAAGTTCAGAACATCCAGTGCCCTCGC
CGCATCTGCAGGGTCGCCGTAGTTAACGTAGGCGTAGCCGAGAGAGCGCC
TGGTGCTCAGGTCTCGACAAACCCTAACCGACACGACTTGACCAACCAGG
CTCAACAGATCAAAAAGCTGCGAATCGGTTACGTTGAAATCGAGATCGCC
AACATAAAGGGACGTCGCTAGTAACCGGTTCCCTGACGCACCCGCCGCCT
CTCCGTTTCGCCCCGAGATTTGCCCTTGAAGTTGATATCAAAGAGCTCAA
GAAAACAAAGAACAGGTTGAAGCCGCAAGAAGCAGAAAAAACAGCAGCCA
CGAATTGCCTCTGGAATTGGCAGCGAAAAGCAAAGAGAGAGAGAGGGTTT
CTTTTGGATCTTTTCATTAGTCACCCTATGGTCTTAGTAATTTATTTTTT
ATGTCAAAGTTTGGACTTTTGTTGCATTTAAGTCCAACAGAATATGTGAT
TTAAGGTTTTTGGTTTCTATCCCATGGCACCCCATGGTTTCATTATTTT
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