CF835997

Overview
NameCF835997
Unique NameCF835997
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: ELAV3_HUMAN (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 4.104e-14
Identity = 45/143 (31.47%), Postives = 72/143 (50.35%), Query Frame = -2
Query:   47 GQISGRNGEAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 475
            G + G NG    +       T+L V  L  N+T  +   L   +G + S ++ RD  T +SLGY +VNY DP DA +A++ LN   L  K+I+++  +  PS      A + +  L K++  K +   FS +G I++  I  D
Sbjct:   25 GPLLGTNGATDDSK------TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVS--YARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVD 159          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: ELAV3_MOUSE (ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.361e-14
Identity = 45/143 (31.47%), Postives = 72/143 (50.35%), Query Frame = -2
Query:   47 GQISGRNGEAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 475
            G + G NG    +       T+L V  L  N+T  +   L   +G + S ++ RD  T +SLGY +VNY DP DA +A++ LN   L  K+I+++  +  PS      A + +  L K++  K +   FS +G I++  I  D
Sbjct:   25 GPLLGTNGATDDSK------TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVS--YARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLD 159          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: ELAV4_RAT (ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.001e-14
Identity = 42/123 (34.15%), Postives = 67/123 (54.47%), Query Frame = -2
Query:   47 TSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 415
            T+L V  L  N+T  +   L   +G++ S ++ RD  T +SLGY +VNY DP DA +A++ LN   L  K+I+++  +  PS      A + +  L K++  K L   FS +G I++  I  D
Sbjct:   39 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS--YARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 159          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: ELAV4_MOUSE (ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.001e-14
Identity = 42/123 (34.15%), Postives = 67/123 (54.47%), Query Frame = -2
Query:   47 TSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 415
            T+L V  L  N+T  +   L   +G++ S ++ RD  T +SLGY +VNY DP DA +A++ LN   L  K+I+++  +  PS      A + +  L K++  K L   FS +G I++  I  D
Sbjct:   51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS--YARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 171          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: ELAV4_HUMAN (ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 7.001e-14
Identity = 42/123 (34.15%), Postives = 67/123 (54.47%), Query Frame = -2
Query:   47 TSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 415
            T+L V  L  N+T  +   L   +G++ S ++ RD  T +SLGY +VNY DP DA +A++ LN   L  K+I+++  +  PS      A + +  L K++  K L   FS +G I++  I  D
Sbjct:   46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS--YARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 166          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.560e-13
Identity = 42/123 (34.15%), Postives = 67/123 (54.47%), Query Frame = -2
Query:   47 TSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 415
            T+L    L  N+T  +L  L   +G++ S ++ RD  T +SLGY +VNY DP DA +A++ LN   L  K+I+++  +  PS      A + +  L K++  K L   FS +G I++  I  D
Sbjct:   39 TNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS--YARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 159          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: ELAV_DROVI (Protein elav OS=Drosophila virilis GN=elav PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.475e-13
Identity = 52/169 (30.77%), Postives = 86/169 (50.89%), Query Frame = -2
Query:   29 QLQGQISGRNGEAAGA----SGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLST-------------RRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATDGSRESQ 484
            Q Q Q +  NG + GA    +G+    T+L V  L   +T+ ++  L S VG++ SV++ RD S               +SLGY +VNY  P DA +A++VLN   L NK+I+++     PS      A + +  L K++  + L   F+ FG+I++  I  +   ++Q
Sbjct:  158 QQQVQQANTNGNSGGAQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVS--FARPSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQ 324          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.475e-13
Identity = 43/124 (34.68%), Postives = 68/124 (54.84%), Query Frame = -2
Query:   47 TSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTR-RSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 415
            T+L V  L  N+T  +L  L   +G++ S ++ RD  T  +SLGY +VNY DP DA +A++ LN   L  K+I+++  +  PS      A + +  L K++  K L   FS +G I++  I  D
Sbjct:   66 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS--YARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 187          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.475e-13
Identity = 43/123 (34.96%), Postives = 67/123 (54.47%), Query Frame = -2
Query:   47 TSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 415
            T+L V  L  N+T  +L  L S +G+V S ++ RD     SLGY +VNY    DA RA++ LN   L +K+I+++  +  PS      A + I  L +++  K + D FS FG I++  +  D
Sbjct:   20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVS--YARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVD 140          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: ELAV1_MOUSE (ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.538e-13
Identity = 43/123 (34.96%), Postives = 66/123 (53.66%), Query Frame = -2
Query:   47 TSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 415
            T+L V  L  N+T  +L  L S +G+V S ++ RD     SLGY +VNY    DA RA+  LN   L +K+I+++  +  PS      A + I  L +++  K + D FS FG I++  +  D
Sbjct:   20 TNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVS--YARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVD 140          
The following BLAST results are available for this feature:
BLAST of CF835997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
ELAV3_HUMAN4.104e-1431.47ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1... [more]
ELAV3_MOUSE5.361e-1431.47ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1... [more]
ELAV4_RAT7.001e-1434.15ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4... [more]
ELAV4_MOUSE7.001e-1434.15ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1... [more]
ELAV4_HUMAN7.001e-1434.15ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1... [more]
ELAV2_RAT1.560e-1334.15ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2... [more]
ELAV_DROVI3.475e-1330.77Protein elav OS=Drosophila virilis GN=elav PE=3 SV... [more]
ELAV2_XENLA3.475e-1334.68ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE... [more]
ELAV1_HUMAN3.475e-1334.96ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1... [more]
ELAV1_MOUSE4.538e-1334.96ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E03_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835997 ID=CF835997; Name=CF835997; organism=Citrus sinensis; type=EST; length=749bp
ACGTAAAAGATCATTTTTCTAGTAGTGCTTGGGACTCGCGAGAACCATCA
GTAGCTATCTCACAAGAAAGAATGCTCCCAAATGAAGAAAATGTATCGCG
TAATGCTTTGTGATGAACAGACTTGTCCAGATTCTCGATAAGTATGGTCG
CAGAACCGGTTTCTCGGATACTAGGATCCCCATGACATTACGTGATTCTG
ATGGACTTATTATTAAGTGGAGTGAAGTTCAGAACATCCAGTGCCCTCGC
CGCATCTGCAGGGTCGCCGTAGTTAACGTAGGCGTAGCCGAGAGAGCGCC
TGGTGCTCAGGTCTCGACAAACCCTAACCGACACGACTTGACCAACCAGG
CTCAACAGATCAAAAAGCTGCGAATCGGTTACGTTGAAATCGAGATCGCC
AACATAAAGGGACGTCGCTAGTAACCGGTTCCCTGACGCACCCGCCGCCT
CTCCGTTTCGCCCCGAGATTTGCCCTTGAAGTTGATATCAAAGAGCTCAA
GAAAACAAAGAACAGGTTGAAGCCGCAAGAAGCAGAAAAAACAGCAGCCA
CGAATTGCCTCTGGAATTGGCAGCGAAAAGCAAAGAGAGAGAGAGGGTTT
CTTTTGGATCTTTTCATTAGTCACCCTATGGTCTTAGTAATTTATTTTTT
ATGTCAAAGTTTGGACTTTTGTTGCATTTAAGTCCAACAGAATATGTGAT
TTAAGGTTTTTGGTTTCTATCCCATGGCACCCCATGGTTTCATTATTTT
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