CF835997
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: ELAV3_HUMAN (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3) HSP 1 Score: 78.5666 bits (192), Expect = 4.104e-14 Identity = 45/143 (31.47%), Postives = 72/143 (50.35%), Query Frame = -2 Query: 47 GQISGRNGEAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 475 G + G NG + T+L V L N+T + L +G + S ++ RD T +SLGY +VNY DP DA +A++ LN L K+I+++ + PS A + + L K++ K + FS +G I++ I D Sbjct: 25 GPLLGTNGATDDSK------TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVS--YARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVD 159
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: ELAV3_MOUSE (ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.361e-14 Identity = 45/143 (31.47%), Postives = 72/143 (50.35%), Query Frame = -2 Query: 47 GQISGRNGEAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 475 G + G NG + T+L V L N+T + L +G + S ++ RD T +SLGY +VNY DP DA +A++ LN L K+I+++ + PS A + + L K++ K + FS +G I++ I D Sbjct: 25 GPLLGTNGATDDSK------TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVS--YARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLD 159
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: ELAV4_RAT (ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 7.001e-14 Identity = 42/123 (34.15%), Postives = 67/123 (54.47%), Query Frame = -2 Query: 47 TSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 415 T+L V L N+T + L +G++ S ++ RD T +SLGY +VNY DP DA +A++ LN L K+I+++ + PS A + + L K++ K L FS +G I++ I D Sbjct: 39 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS--YARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 159
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: ELAV4_MOUSE (ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 7.001e-14 Identity = 42/123 (34.15%), Postives = 67/123 (54.47%), Query Frame = -2 Query: 47 TSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 415 T+L V L N+T + L +G++ S ++ RD T +SLGY +VNY DP DA +A++ LN L K+I+++ + PS A + + L K++ K L FS +G I++ I D Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS--YARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 171
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: ELAV4_HUMAN (ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2) HSP 1 Score: 77.7962 bits (190), Expect = 7.001e-14 Identity = 42/123 (34.15%), Postives = 67/123 (54.47%), Query Frame = -2 Query: 47 TSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 415 T+L V L N+T + L +G++ S ++ RD T +SLGY +VNY DP DA +A++ LN L K+I+++ + PS A + + L K++ K L FS +G I++ I D Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS--YARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 166
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.560e-13 Identity = 42/123 (34.15%), Postives = 67/123 (54.47%), Query Frame = -2 Query: 47 TSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 415 T+L L N+T +L L +G++ S ++ RD T +SLGY +VNY DP DA +A++ LN L K+I+++ + PS A + + L K++ K L FS +G I++ I D Sbjct: 39 TNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS--YARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 159
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: ELAV_DROVI (Protein elav OS=Drosophila virilis GN=elav PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.475e-13 Identity = 52/169 (30.77%), Postives = 86/169 (50.89%), Query Frame = -2 Query: 29 QLQGQISGRNGEAAGA----SGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLST-------------RRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATDGSRESQ 484 Q Q Q + NG + GA +G+ T+L V L +T+ ++ L S VG++ SV++ RD S +SLGY +VNY P DA +A++VLN L NK+I+++ PS A + + L K++ + L F+ FG+I++ I + ++Q Sbjct: 158 QQQVQQANTNGNSGGAQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVS--FARPSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQ 324
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 3.475e-13 Identity = 43/124 (34.68%), Postives = 68/124 (54.84%), Query Frame = -2 Query: 47 TSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTR-RSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 415 T+L V L N+T +L L +G++ S ++ RD T +SLGY +VNY DP DA +A++ LN L K+I+++ + PS A + + L K++ K L FS +G I++ I D Sbjct: 66 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS--YARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 187
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 3.475e-13 Identity = 43/123 (34.96%), Postives = 67/123 (54.47%), Query Frame = -2 Query: 47 TSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 415 T+L V L N+T +L L S +G+V S ++ RD SLGY +VNY DA RA++ LN L +K+I+++ + PS A + I L +++ K + D FS FG I++ + D Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVS--YARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVD 140
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: ELAV1_MOUSE (ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.538e-13 Identity = 43/123 (34.96%), Postives = 66/123 (53.66%), Query Frame = -2 Query: 47 TSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 415 T+L V L N+T +L L S +G+V S ++ RD SLGY +VNY DA RA+ LN L +K+I+++ + PS A + I L +++ K + D FS FG I++ + D Sbjct: 20 TNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVS--YARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVD 140 The following BLAST results are available for this feature:
BLAST of CF835997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835997 ID=CF835997; Name=CF835997; organism=Citrus sinensis; type=EST; length=749bpback to top |