CF835997
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: ELAV_DROME (Protein elav OS=Drosophila melanogaster GN=elav PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.741e-13 Identity = 50/167 (29.94%), Postives = 85/167 (50.90%), Query Frame = -2 Query: 29 QLQGQISGRNGEAA--GASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLST-------------RRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATDGSRESQ 484 Q Q +G G + G++G+ T+L V L +T+ ++ L S VG++ SV++ RD S +SLGY +VNY P DA +A++VLN L NK+I+++ PS A + + L K++ + L F+ FG+I++ I + ++Q Sbjct: 124 QAQPNTNGNAGSGSQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVS--FARPSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQ 288
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: SF3B4_CAEEL (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49 PE=1 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 1.724e-12 Identity = 46/127 (36.22%), Postives = 66/127 (51.97%), Query Frame = -2 Query: 68 AAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSIL 448 +AG R ++YVG LD V++S L++L+ G VVSV + +D T G+ +V + DA A+ +LN L K I++ + G A I + NLD V K L DTFS+FG IL Sbjct: 2 SAGPIVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVG-ANIFVGNLDPEVDEKLLYDTFSAFGVIL 127
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: ELV1B_XENLA (ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-B PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.252e-12 Identity = 42/123 (34.15%), Postives = 66/123 (53.66%), Query Frame = -2 Query: 47 TSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 415 T+L V L N+T +L L S +G+V S ++ RD SLGY +VNY + DA RA++ LN L +K+I+++ PS A + I L +++ K + D F FG I++ + D Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVS--FARPSSETIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVD 140
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: ELAV1_XENTR (ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.252e-12 Identity = 42/123 (34.15%), Postives = 66/123 (53.66%), Query Frame = -2 Query: 47 TSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 415 T+L V L N+T +L L S +G+V S ++ RD SLGY +VNY + DA RA++ LN L +K+I+++ PS A + I L +++ K + D F FG I++ + D Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSVAR--PSSESIKDANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVD 140
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.553e-12 Identity = 45/127 (35.43%), Postives = 64/127 (50.39%), Query Frame = -2 Query: 68 AAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSIL 448 AAG R ++YVG LD V++ L++L G VV+ + +D T + GY +V + DA A+ ++N L K IR+ + G A I I NLD + K L DTFS+FG IL Sbjct: 2 AAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVIL 127
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.553e-12 Identity = 45/127 (35.43%), Postives = 64/127 (50.39%), Query Frame = -2 Query: 68 AAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSIL 448 AAG R ++YVG LD V++ L++L G VV+ + +D T + GY +V + DA A+ ++N L K IR+ + G A I I NLD + K L DTFS+FG IL Sbjct: 2 AAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVIL 127
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.553e-12 Identity = 45/127 (35.43%), Postives = 64/127 (50.39%), Query Frame = -2 Query: 68 AAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSIL 448 AAG R ++YVG LD V++ L++L G VV+ + +D T + GY +V + DA A+ ++N L K IR+ + G A I I NLD + K L DTFS+FG IL Sbjct: 2 AAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVIL 127
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: SXL_MEGSC (Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE=2 SV=3) HSP 1 Score: 70.8626 bits (172), Expect = 8.558e-12 Identity = 41/131 (31.30%), Postives = 68/131 (51.91%), Query Frame = -2 Query: 47 SGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CH-GDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 436 SG T+L V L ++ D +L+ L +G + + R+ RD T S GY +V++G ADA RA++ LN + NK I+++ G +R+T + + NL +S+ + L F +G I+ I D Sbjct: 71 SGTNNSGTNLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNLNGITVRNKRIKVSFARPGGEQLRDT---NLYVTNLSRSITDEQLETIFGKYGQIVQKNILRD 198
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: SXL_CERCA (Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE=2 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 2.490e-11 Identity = 42/140 (30.00%), Postives = 73/140 (52.14%), Query Frame = -2 Query: 47 GRNGEAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CH-GDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 463 GR+G G++G T+L V L ++TD +L+ L +G + + R+ RD T S GYA+V++ D+ RA+ LN + NK ++++ G SI++T + + NL +++ L F +G I+ I D Sbjct: 99 GRDGHGGGSNG-----TNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSLNGITVRNKRLKVSYARPGGESIKDT---NLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRD 230
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABP_ENCCU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Encephalitozoon cuniculi GN=PAB1 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.252e-11 Identity = 49/141 (34.75%), Postives = 77/141 (54.61%), Query Frame = -2 Query: 29 EAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATDGSRESQ 451 E+ AS + L ++YVG+L DS LF + S VG+V+SV++ + S +A+V + + DA RA+ L+N+ IR+ D ETG+ I ++NL + K L D FS FG I+SC++AT +S+ Sbjct: 5 ESKRASSDSL---TIYVGELSPKTLDSDLFRVFSNVGKVLSVKLIKRAEPVSS--FAFVTFENEEDAERAIREYKHYELHNRQIRVM--KKDERPPETGN--IFVKNLPEDFTGKDLDDAFSMFGEIVSCKVATTSHGKSK 136 The following BLAST results are available for this feature:
BLAST of CF835997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835997 ID=CF835997; Name=CF835997; organism=Citrus sinensis; type=EST; length=749bpback to top |