CF835997

Overview
NameCF835997
Unique NameCF835997
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835997_ssr584 microsatellite CF835997_ssr584:584..595. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1143 contig Csv1_Contig1143:1..749. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: ELAV_DROME (Protein elav OS=Drosophila melanogaster GN=elav PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.741e-13
Identity = 50/167 (29.94%), Postives = 85/167 (50.90%), Query Frame = -2
Query:   29 QLQGQISGRNGEAA--GASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLST-------------RRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATDGSRESQ 484
            Q Q   +G  G  +  G++G+    T+L V  L   +T+ ++  L S VG++ SV++ RD S               +SLGY +VNY  P DA +A++VLN   L NK+I+++     PS      A + +  L K++  + L   F+ FG+I++  I  +   ++Q
Sbjct:  124 QAQPNTNGNAGSGSQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVS--FARPSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQ 288          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: SF3B4_CAEEL (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.724e-12
Identity = 46/127 (36.22%), Postives = 66/127 (51.97%), Query Frame = -2
Query:   68 AAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSIL 448
            +AG    R    ++YVG LD  V++S L++L+   G VVSV + +D  T    G+ +V +    DA  A+ +LN   L  K I++          + G A I + NLD  V  K L DTFS+FG IL
Sbjct:    2 SAGPIVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVG-ANIFVGNLDPEVDEKLLYDTFSAFGVIL 127          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: ELV1B_XENLA (ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-B PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.252e-12
Identity = 42/123 (34.15%), Postives = 66/123 (53.66%), Query Frame = -2
Query:   47 TSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 415
            T+L V  L  N+T  +L  L S +G+V S ++ RD     SLGY +VNY +  DA RA++ LN   L +K+I+++     PS      A + I  L +++  K + D F  FG I++  +  D
Sbjct:   20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVS--FARPSSETIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVD 140          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: ELAV1_XENTR (ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.252e-12
Identity = 42/123 (34.15%), Postives = 66/123 (53.66%), Query Frame = -2
Query:   47 TSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 415
            T+L V  L  N+T  +L  L S +G+V S ++ RD     SLGY +VNY +  DA RA++ LN   L +K+I+++     PS      A + I  L +++  K + D F  FG I++  +  D
Sbjct:   20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSVAR--PSSESIKDANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVD 140          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.553e-12
Identity = 45/127 (35.43%), Postives = 64/127 (50.39%), Query Frame = -2
Query:   68 AAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSIL 448
            AAG    R    ++YVG LD  V++  L++L    G VV+  + +D  T +  GY +V +    DA  A+ ++N   L  K IR+          + G A I I NLD  +  K L DTFS+FG IL
Sbjct:    2 AAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVIL 127          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.553e-12
Identity = 45/127 (35.43%), Postives = 64/127 (50.39%), Query Frame = -2
Query:   68 AAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSIL 448
            AAG    R    ++YVG LD  V++  L++L    G VV+  + +D  T +  GY +V +    DA  A+ ++N   L  K IR+          + G A I I NLD  +  K L DTFS+FG IL
Sbjct:    2 AAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVIL 127          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.553e-12
Identity = 45/127 (35.43%), Postives = 64/127 (50.39%), Query Frame = -2
Query:   68 AAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSIL 448
            AAG    R    ++YVG LD  V++  L++L    G VV+  + +D  T +  GY +V +    DA  A+ ++N   L  K IR+          + G A I I NLD  +  K L DTFS+FG IL
Sbjct:    2 AAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVIL 127          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: SXL_MEGSC (Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 8.558e-12
Identity = 41/131 (31.30%), Postives = 68/131 (51.91%), Query Frame = -2
Query:   47 SGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CH-GDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 436
            SG     T+L V  L  ++ D +L+ L   +G + + R+ RD  T  S GY +V++G  ADA RA++ LN   + NK I+++    G   +R+T    + + NL +S+  + L   F  +G I+   I  D
Sbjct:   71 SGTNNSGTNLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNLNGITVRNKRIKVSFARPGGEQLRDT---NLYVTNLSRSITDEQLETIFGKYGQIVQKNILRD 198          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: SXL_CERCA (Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.490e-11
Identity = 42/140 (30.00%), Postives = 73/140 (52.14%), Query Frame = -2
Query:   47 GRNGEAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CH-GDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 463
            GR+G   G++G     T+L V  L  ++TD +L+ L   +G + + R+ RD  T  S GYA+V++    D+ RA+  LN   + NK ++++    G  SI++T    + + NL +++    L   F  +G I+   I  D
Sbjct:   99 GRDGHGGGSNG-----TNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSLNGITVRNKRLKVSYARPGGESIKDT---NLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRD 230          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: PABP_ENCCU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Encephalitozoon cuniculi GN=PAB1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.252e-11
Identity = 49/141 (34.75%), Postives = 77/141 (54.61%), Query Frame = -2
Query:   29 EAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATDGSRESQ 451
            E+  AS + L   ++YVG+L     DS LF + S VG+V+SV++ +      S  +A+V + +  DA RA+       L+N+ IR+     D    ETG+  I ++NL +    K L D FS FG I+SC++AT    +S+
Sbjct:    5 ESKRASSDSL---TIYVGELSPKTLDSDLFRVFSNVGKVLSVKLIKRAEPVSS--FAFVTFENEEDAERAIREYKHYELHNRQIRVM--KKDERPPETGN--IFVKNLPEDFTGKDLDDAFSMFGEIVSCKVATTSHGKSK 136          
The following BLAST results are available for this feature:
BLAST of CF835997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
ELAV_DROME7.741e-1329.94Protein elav OS=Drosophila melanogaster GN=elav PE... [more]
SF3B4_CAEEL1.724e-1236.22Splicing factor 3B subunit 4 OS=Caenorhabditis ele... [more]
ELV1B_XENLA2.252e-1234.15ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-... [more]
ELAV1_XENTR2.252e-1234.15ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl... [more]
SF3B4_RAT6.553e-1235.43Splicing factor 3B subunit 4 OS=Rattus norvegicus ... [more]
SF3B4_MOUSE6.553e-1235.43Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf... [more]
SF3B4_HUMAN6.553e-1235.43Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF... [more]
SXL_MEGSC8.558e-1231.30Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE... [more]
SXL_CERCA2.490e-1130.00Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE... [more]
PABP_ENCCU3.252e-1134.75Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E03_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835997 ID=CF835997; Name=CF835997; organism=Citrus sinensis; type=EST; length=749bp
ACGTAAAAGATCATTTTTCTAGTAGTGCTTGGGACTCGCGAGAACCATCA
GTAGCTATCTCACAAGAAAGAATGCTCCCAAATGAAGAAAATGTATCGCG
TAATGCTTTGTGATGAACAGACTTGTCCAGATTCTCGATAAGTATGGTCG
CAGAACCGGTTTCTCGGATACTAGGATCCCCATGACATTACGTGATTCTG
ATGGACTTATTATTAAGTGGAGTGAAGTTCAGAACATCCAGTGCCCTCGC
CGCATCTGCAGGGTCGCCGTAGTTAACGTAGGCGTAGCCGAGAGAGCGCC
TGGTGCTCAGGTCTCGACAAACCCTAACCGACACGACTTGACCAACCAGG
CTCAACAGATCAAAAAGCTGCGAATCGGTTACGTTGAAATCGAGATCGCC
AACATAAAGGGACGTCGCTAGTAACCGGTTCCCTGACGCACCCGCCGCCT
CTCCGTTTCGCCCCGAGATTTGCCCTTGAAGTTGATATCAAAGAGCTCAA
GAAAACAAAGAACAGGTTGAAGCCGCAAGAAGCAGAAAAAACAGCAGCCA
CGAATTGCCTCTGGAATTGGCAGCGAAAAGCAAAGAGAGAGAGAGGGTTT
CTTTTGGATCTTTTCATTAGTCACCCTATGGTCTTAGTAATTTATTTTTT
ATGTCAAAGTTTGGACTTTTGTTGCATTTAAGTCCAACAGAATATGTGAT
TTAAGGTTTTTGGTTTCTATCCCATGGCACCCCATGGTTTCATTATTTT
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