CF835997

Overview
NameCF835997
Unique NameCF835997
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835997_ssr584 microsatellite CF835997_ssr584:584..595. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1143 contig Csv1_Contig1143:1..749. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: ELV1A_XENLA (ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-A PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.252e-11
Identity = 44/134 (32.84%), Postives = 68/134 (50.75%), Query Frame = -2
Query:   47 TSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRD-----------LSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 415
            T+L V  L  N+T  +L  L S +G+V S ++ RD           LS   SLGY +VNY +  DA RA++ LN   L +K+I+++     PS      A + I  L +++  K + D F  FG I++  +  D
Sbjct:   20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVS--FARPSSESIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVD 151          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: SAP49_SCHPO (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe GN=sap49 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.547e-11
Identity = 40/129 (31.01%), Postives = 64/129 (49.61%), Query Frame = -2
Query:   29 SLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSC-EIATDGSRESQ 412
            ++Y+G+LD  VTDS LF+L    G VV++ + RD       G+ +  +    D   A  +LN   L  K IR+     D  +     A + + NLD  V  + L DTFS+ G ++   ++A D +  S+
Sbjct:   12 TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSK 140          
BLAST of CF835997 vs. ExPASy Swiss-Prot
Match: SXL_DROME (Protein sex-lethal OS=Drosophila melanogaster GN=Sxl PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.462e-11
Identity = 44/146 (30.14%), Postives = 73/146 (50.00%), Query Frame = -2
Query:   47 LQGQISGRNGEAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CH-GDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 481
            L G   G  G     +  R   T+L V  L  ++TD +L+ L   +G + + R+ RD  T  S GYA+V++    D+ RA+ VLN   + NK ++++    G  SI++T    + + NL +++    L   F  +GSI+   I  D
Sbjct:  103 LCGLSLGSGGSDDLMNDPRASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDT---NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRD 245          
The following BLAST results are available for this feature:
BLAST of CF835997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
ELV1A_XENLA3.252e-1132.84ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-... [more]
SAP49_SCHPO5.547e-1131.01Spliceosome-associated protein 49 OS=Schizosacchar... [more]
SXL_DROME9.462e-1130.14Protein sex-lethal OS=Drosophila melanogaster GN=S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E03_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835997 ID=CF835997; Name=CF835997; organism=Citrus sinensis; type=EST; length=749bp
ACGTAAAAGATCATTTTTCTAGTAGTGCTTGGGACTCGCGAGAACCATCA
GTAGCTATCTCACAAGAAAGAATGCTCCCAAATGAAGAAAATGTATCGCG
TAATGCTTTGTGATGAACAGACTTGTCCAGATTCTCGATAAGTATGGTCG
CAGAACCGGTTTCTCGGATACTAGGATCCCCATGACATTACGTGATTCTG
ATGGACTTATTATTAAGTGGAGTGAAGTTCAGAACATCCAGTGCCCTCGC
CGCATCTGCAGGGTCGCCGTAGTTAACGTAGGCGTAGCCGAGAGAGCGCC
TGGTGCTCAGGTCTCGACAAACCCTAACCGACACGACTTGACCAACCAGG
CTCAACAGATCAAAAAGCTGCGAATCGGTTACGTTGAAATCGAGATCGCC
AACATAAAGGGACGTCGCTAGTAACCGGTTCCCTGACGCACCCGCCGCCT
CTCCGTTTCGCCCCGAGATTTGCCCTTGAAGTTGATATCAAAGAGCTCAA
GAAAACAAAGAACAGGTTGAAGCCGCAAGAAGCAGAAAAAACAGCAGCCA
CGAATTGCCTCTGGAATTGGCAGCGAAAAGCAAAGAGAGAGAGAGGGTTT
CTTTTGGATCTTTTCATTAGTCACCCTATGGTCTTAGTAATTTATTTTTT
ATGTCAAAGTTTGGACTTTTGTTGCATTTAAGTCCAACAGAATATGTGAT
TTAAGGTTTTTGGTTTCTATCCCATGGCACCCCATGGTTTCATTATTTT
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