CF836003

Overview
NameCF836003
Unique NameCF836003
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RRP3_NEUCR (ATP-dependent rRNA helicase rrp-3 OS=Neurospora crassa GN=rrp-3 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.793e-32
Identity = 65/128 (50.78%), Postives = 91/128 (71.09%), Query Frame = 3 
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            F  LG+ +   + C+ LG + PTP+Q   IP  L+ +D++G+A+TGSGKTAAFALPIL  L + P    ALV+ PTRELA Q+A+ F+ALGS + LRC  + GGMD++T A +L  +PHV++ATPG +
Sbjct:   92 FKDLGIVDALCEACERLGYKNPTPIQEQSIPLALQNRDIIGIAETGSGKTAAFALPILQALLDKPAPLFALVLAPTRELAAQIAQAFEALGSLISLRCALILGGMDMVTQAIALGKKPHVIVATPGRL 219
[Close]
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RRP3_EMENI (ATP-dependent rRNA helicase rrp3 OS=Emericella nidulans GN=rrp3 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.793e-32
Identity = 62/128 (48.44%), Postives = 91/128 (71.09%), Query Frame = 3 
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            F  LG+ +   + C+ +G + PTP+Q+  IP  LEG+DV+GLA+TGSGKTAAFALP+L  L E P     LV+ PTRELAYQ+++ F+ LGS + +RC  + GGMD++  + +L  +PH+++ATPG +
Sbjct:   48 FKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPMLQALMEAPQTLFGLVLAPTRELAYQISQAFETLGSTIGVRCAVIVGGMDMVAQSIALGKKPHIIVATPGRL 175
[Close]
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RRP3_COCIM (ATP-dependent rRNA helicase RRP3 OS=Coccidioides immitis GN=RRP3 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.793e-32
Identity = 63/128 (49.22%), Postives = 91/128 (71.09%), Query Frame = 3 
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            F  LG+ +   + C  LG + PT +Q   IP  L+G+D++GLA+TGSGKTAAFALPIL  L + P     LV+ PTRELAYQ+++QF+ALGS + +RC  + GGMD+++ A +L  +PH+++ATPG +
Sbjct:   50 FKDLGIIDSLCEACDSLGYKAPTQIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPQSMFGLVLAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIALGKKPHIIVATPGRL 177
[Close]
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RRP3_CHAGB (ATP-dependent rRNA helicase RRP3 OS=Chaetomium globosum GN=RRP3 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.793e-32
Identity = 66/128 (51.56%), Postives = 90/128 (70.31%), Query Frame = 3 
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            F  LG+ +     CKELG ++PTP+Q   IP  L+ +D++GLA+TGSGKT AFALPIL  L + P    ALV+ PTRELA Q+A+ F+ALGS + LRC  + GG+D++  A +L  +PHVV+ATPG +
Sbjct:   67 FQDLGIVDSLCDACKELGWKKPTPIQQESIPLALQDRDIIGLAETGSGKTGAFALPILQALLDKPQPLFALVLAPTRELAAQIAQSFEALGSLISLRCALILGGLDMVQQAIALGKKPHVVVATPGRL 194
[Close]
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RRP3_BOTFB (ATP-dependent rRNA helicase rrp3 OS=Botryotinia fuckeliana (strain B05.10) GN=rrp3 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.341e-32
Identity = 62/128 (48.44%), Postives = 91/128 (71.09%), Query Frame = 3 
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            F  LG+ +   + C  LG + PTP+Q   IP  L+G+D++GLA+TGSGKTAAFALPIL  L + P     LV+ PTRELAYQ+++QF+ALGS + ++C  + GGMD++  + +L  +PH+++ATPG +
Sbjct:   62 FKDLGIVDSLCEACDTLGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQALLDKPQPLFGLVLAPTRELAYQISQQFEALGSVIRVKCAVIVGGMDMVPQSIALGKKPHIIVATPGRL 189
[Close]
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RRP3_ASPFU (ATP-dependent rRNA helicase rrp3 OS=Aspergillus fumigatus GN=rrp3 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.341e-32
Identity = 59/128 (46.09%), Postives = 94/128 (73.44%), Query Frame = 3 
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            F  LG+ +   + C+ +G + PTP+Q   IP  L+G+D++GLA+TGSGKTAAFALPIL  L E+P     L++ PTRELA+Q+++ F++LGS +++RC  + GGMD+++ + +L  +PH+++ATPG +
Sbjct:   54 FKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMENPQSFFGLILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATPGRL 181
[Close]
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RRP3_NEOFI (ATP-dependent rRNA helicase rrp3 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rrp3 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.994e-32
Identity = 59/128 (46.09%), Postives = 93/128 (72.66%), Query Frame = 3 
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            F  LG+ +   + C+ +G + PTP+Q   IP  L+G+D++GLA+TGSGKTAAFALPIL  L E P     L++ PTRELA+Q+++ F++LGS +++RC  + GGMD+++ + +L  +PH+++ATPG +
Sbjct:   54 FKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMEKPQSFFGLILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATPGRL 181
[Close]
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RRP3_AJECN (ATP-dependent rRNA helicase RRP3 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=RRP3 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.994e-32
Identity = 63/128 (49.22%), Postives = 90/128 (70.31%), Query Frame = 3 
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            F  LG+ +   + C+ LG + PTP+Q   IP  L+G+D++GLA+TGSGKTAAFALPIL  L   P     L++ PTRELA Q++E F+ALGS + +RC  + GGMD+++ A SL  +PH+++ATPG +
Sbjct:   61 FKDLGIIDSLCEACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMNKPQSLFGLILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAISLGKKPHIIVATPGRL 188
[Close]
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RRP3_SCLS1 (ATP-dependent rRNA helicase rrp3 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=rrp3 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.216e-32
Identity = 62/128 (48.44%), Postives = 90/128 (70.31%), Query Frame = 3 
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            F  LG+ +   + C  LG + PTP+Q   IP  L+G+D++GLA+TGSGKTAAFALPIL  L + P     LV+ PTRELAYQ+++ F+ALGS + ++C  + GGMD++  A +L  +PH+++ATPG +
Sbjct:   58 FKDLGIVDSLCEACDTLGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQSLLDKPQPLFGLVLAPTRELAYQISQSFEALGSIIRVKCAVIVGGMDMVPQAIALGKKPHIIVATPGRL 185
[Close]
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RRP3_MAGGR (ATP-dependent rRNA helicase RRP3 OS=Magnaporthe grisea GN=RRP3 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.216e-32
Identity = 63/128 (49.22%), Postives = 90/128 (70.31%), Query Frame = 3 
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            F  LG+ E   + C+ L  ++PTP+Q   IP  L+G+DV+G+A+TGSGKTAAFALPIL  L E P     LV+ PTRELA Q+ + F+ALG+ + LRC  V GG+D+++ + +L  +PH+V+ATPG +
Sbjct:  112 FRDLGIVEPLCEACEALKFKKPTPIQEQAIPLALQGRDVIGIAETGSGKTAAFALPILQSLLEKPQPLFGLVLAPTRELAAQIGQTFEALGASISLRCAVVVGGLDMVSQSTALGKKPHIVVATPGRL 239
The following BLAST results are available for this feature:
BLAST of CF836003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRP3_NEUCR1.793e-3250.78ATP-dependent rRNA helicase rrp-3 OS=Neurospora cr... [more]
RRP3_EMENI1.793e-3248.44ATP-dependent rRNA helicase rrp3 OS=Emericella nid... [more]
RRP3_COCIM1.793e-3249.22ATP-dependent rRNA helicase RRP3 OS=Coccidioides i... [more]
RRP3_CHAGB1.793e-3251.56ATP-dependent rRNA helicase RRP3 OS=Chaetomium glo... [more]
RRP3_BOTFB2.341e-3248.44ATP-dependent rRNA helicase rrp3 OS=Botryotinia fu... [more]
RRP3_ASPFU2.341e-3246.09ATP-dependent rRNA helicase rrp3 OS=Aspergillus fu... [more]
RRP3_NEOFI3.994e-3246.09ATP-dependent rRNA helicase rrp3 OS=Neosartorya fi... [more]
RRP3_AJECN3.994e-3249.22ATP-dependent rRNA helicase RRP3 OS=Ajellomyces ca... [more]
RRP3_SCLS15.216e-3248.44ATP-dependent rRNA helicase rrp3 OS=Sclerotinia sc... [more]
RRP3_MAGGR5.216e-3249.22ATP-dependent rRNA helicase RRP3 OS=Magnaporthe gr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836003 ID=CF836003; Name=CF836003; organism=Citrus sinensis; type=EST; length=712bp
GATGACTGCTCCCTTAAACACCCGAAAATCGAATCCTTGGCCTTCTCCAG
CCCTTAATACCTATATTCATCACCCTAAATGGAAAATTGTTGATTTATAC
TGACTGAGTAAACATGGACGAACACATCCACCTCGACGGGAACTTCCCTC
TCTTCGCCAAACCCAAATCTAAAACCAGAATCAAACCGGAACCGCAACCT
GAACCTGAACCGGAATCCAAAAACGCTAAAACCGCTCGACTCGAGAAATT
CACAACTCCCGATCCTAACTCTACCACCACCGACTCCACCGTCACTTTCG
CCGGCCTCGGCCTCGCCGAATGGGCGGTTCAGACATGCAAGGAGCTTGGC
ATGCGGCGGCCGACACCGGTCCAAACCCACTGCATACCCTAAATTCTCGA
GGGCAAGGACGTGCTGGGGCTGGCGCAGACCGGTAGCGGCAAAACCGCAG
CGTTCGCACTTCCGATACTCCACCGTTTGGCAGAGGACCCGTATGGGGCA
TTGGCACTGGTTATAACGCCGACAAGGGAGCTGGCGTACCAGTTGGCGGA
ACAGTTTAAGGCTCTGGGTTCGGGCTTGCATTTGAGGTGTGAGGCTGTGG
CTGGAGGAATGGATTTGTTGACCCCAGCTAAGAGCTTAATGAATAGGCCG
CATGTCGTTATTGCTACCCCTGGAATGATGAAGGTTTTGCTCCAAGAGGA
CCCTGATATCCC
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