CF836003
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RH45_ORYSJ (DEAD-box ATP-dependent RNA helicase 45 OS=Oryza sativa subsp. japonica GN=Os08g0154200 PE=3 SV=2) HSP 1 Score: 96.6709 bits (239), Expect = 1.333e-19 Identity = 47/129 (36.43%), Postives = 69/129 (53.49%), Query Frame = 3 Query: 309 GLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDP-----YGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680 GL + T K+LG +P P+Q +P I+ G+D +G+A+TGSGKT AF LP+L + + P G + L++ PTREL Q+ K L + C A+ GG + L +V+ TPG M Sbjct: 291 GLTSKLLDTIKKLGFEKPMPIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHVKDQPPVVPGDGPIGLIMAPTRELVVQIHSDIKKFAKSLGINCVAIYGGSGVAQQISELKRGAEIVVCTPGRM 419
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP10_PHANO (ATP-dependent RNA helicase DBP10 OS=Phaeosphaeria nodorum GN=DBP10 PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.333e-19 Identity = 51/128 (39.84%), Postives = 75/128 (58.59%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLA--EDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPG 674 F +GL ++ + G + PTP+Q +P IL+G DV+G+A+TGSGKTAAF +P++ RL GA ++++P+RELA Q + K G G LR + GG L S+ P ++IATPG Sbjct: 80 FQAMGLNVALLKAIAQKGFKIPTPIQRKAVPLILQGDDVVGMARTGSGKTAAFVIPMIERLKTHSAKVGARGVIMSPSRELALQTLKVVKEFGRGTDLRTILLVGGDSLEEQFNSMTTNPDIIIATPG 207
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RH29_ARATH (Putative DEAD-box ATP-dependent RNA helicase 29 OS=Arabidopsis thaliana GN=RH29 PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.740e-19 Identity = 57/140 (40.71%), Postives = 80/140 (57.14%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAED-PYGAL-ALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMKVLLQEDPDI 710 F L L K+ G + PTP+Q +P IL G DV+ +A+TGSGKTAAF +P+L +L + P G + AL+++PTR+LA Q + K LG LR + GG + + L P V+IATPG + LL E D+ Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKGPDVIIATPGRLMHLLSEVDDM 169
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP10_NEUCR (ATP-dependent RNA helicase dbp-10 OS=Neurospora crassa GN=dbp-10 PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.740e-19 Identity = 53/128 (41.41%), Postives = 75/128 (58.59%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLA--EDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPG 674 F +GL ++ G PTP+Q IP ILE KDV+G+A+TGSGKTAAF +P++ RL G+ AL+++P+RELA Q + K LG G L+ + GG L + + P ++IATPG Sbjct: 101 FQAMGLNAHLLRAITRKGFSVPTPIQRKAIPLILERKDVVGMARTGSGKTAAFVIPMIERLKGHSPRVGSRALIMSPSRELALQTLKVVKELGRGTDLKTVLLVGGDSLEEQFGMMASNPDIIIATPG 228
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RHLE_ECOLI (ATP-dependent RNA helicase rhlE OS=Escherichia coli (strain K12) GN=rhlE PE=1 SV=3) HSP 1 Score: 95.9005 bits (237), Expect = 2.273e-19 Identity = 53/134 (39.55%), Postives = 76/134 (56.72%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPIL-HRLAEDPYG-----ALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680 F LGL+ ++ E G R PTP+Q IP +LEG+D++ AQTG+GKTA F LP+L H + P+ AL++TPTRELA Q+ E + L++R V GG+ + L V++ATPG + Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRL 136
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP10_SCLS1 (ATP-dependent RNA helicase dbp10 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp10 PE=3 SV=2) HSP 1 Score: 95.9005 bits (237), Expect = 2.273e-19 Identity = 51/128 (39.84%), Postives = 74/128 (57.81%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDP--YGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPG 674 F +GL ++ G PTP+Q IP +L+ +DV+G+A+TGSGKTAAF +P++ +L GA AL+++P+RELA Q + K G G L+C + GG L + P +VIATPG Sbjct: 90 FQAMGLNSHLLKAISRKGFNVPTPIQRKTIPLVLDNQDVVGMARTGSGKTAAFVIPMIEKLRAHSVRVGARALIMSPSRELALQTLKVVKEFGRGTDLKCVLLVGGDSLEEQFGFMAANPDIVIATPG 217
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RH29_ORYSJ (DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa subsp. japonica GN=Os08g0416100 PE=2 SV=2) HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19 Identity = 53/140 (37.86%), Postives = 79/140 (56.43%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGA--LALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMKVLLQEDPDI 710 F +GL E + + G R PTP+Q +P IL G D+ +A+TGSGKTAAF +P++ RL GA AL+++PTR+LA Q + + LG L+ + GG + + + L P ++IATPG + L E D+ Sbjct: 51 FESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQRLRRHDAGAGIRALILSPTRDLATQTLKFAQQLGKFTDLKISLIVGGDSMESQFEELAENPDIIIATPGRLVHHLAEVEDL 190
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RH29_ORYSI (DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa subsp. indica GN=OsI_028228 PE=2 SV=2) HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19 Identity = 53/140 (37.86%), Postives = 79/140 (56.43%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGA--LALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMKVLLQEDPDI 710 F +GL E + + G R PTP+Q +P IL G D+ +A+TGSGKTAAF +P++ RL GA AL+++PTR+LA Q + + LG L+ + GG + + + L P ++IATPG + L E D+ Sbjct: 51 FESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQRLRRHDAGAGIRALILSPTRDLATQTLKFAQQLGKFTDLKISLIVGGDSMESQFEELAENPDIIIATPGRLVHHLAEVEDL 190
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DDX46_RAT (Probable ATP-dependent RNA helicase DDX46 OS=Rattus norvegicus GN=Ddx46 PE=1 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19 Identity = 49/129 (37.98%), Postives = 75/129 (58.14%), Query Frame = 3 Query: 309 GLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPIL-----HRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680 G++ + + K+ G +PTP+QT IP I+ G+D++G+A+TGSGKT AF LP+ R E+ G +A+++TPTRELA Q+ ++ K L LR V GG + L +++ TPG M Sbjct: 378 GISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRM 506
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DDX46_PONAB (Probable ATP-dependent RNA helicase DDX46 OS=Pongo abelii GN=DDX46 PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19 Identity = 49/129 (37.98%), Postives = 75/129 (58.14%), Query Frame = 3 Query: 309 GLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPIL-----HRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680 G++ + + K+ G +PTP+QT IP I+ G+D++G+A+TGSGKT AF LP+ R E+ G +A+++TPTRELA Q+ ++ K L LR V GG + L +++ TPG M Sbjct: 378 GISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRM 506 The following BLAST results are available for this feature:
BLAST of CF836003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836003 ID=CF836003; Name=CF836003; organism=Citrus sinensis; type=EST; length=712bpback to top |