CF836003

Overview
NameCF836003
Unique NameCF836003
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RH45_ORYSJ (DEAD-box ATP-dependent RNA helicase 45 OS=Oryza sativa subsp. japonica GN=Os08g0154200 PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.333e-19
Identity = 47/129 (36.43%), Postives = 69/129 (53.49%), Query Frame = 3
Query:  309 GLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDP-----YGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            GL    + T K+LG  +P P+Q   +P I+ G+D +G+A+TGSGKT AF LP+L  + + P      G + L++ PTREL  Q+    K     L + C A+ GG  +      L     +V+ TPG M
Sbjct:  291 GLTSKLLDTIKKLGFEKPMPIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHVKDQPPVVPGDGPIGLIMAPTRELVVQIHSDIKKFAKSLGINCVAIYGGSGVAQQISELKRGAEIVVCTPGRM 419          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP10_PHANO (ATP-dependent RNA helicase DBP10 OS=Phaeosphaeria nodorum GN=DBP10 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.333e-19
Identity = 51/128 (39.84%), Postives = 75/128 (58.59%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLA--EDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPG 674
            F  +GL    ++   + G + PTP+Q   +P IL+G DV+G+A+TGSGKTAAF +P++ RL       GA  ++++P+RELA Q  +  K  G G  LR   + GG  L     S+   P ++IATPG
Sbjct:   80 FQAMGLNVALLKAIAQKGFKIPTPIQRKAVPLILQGDDVVGMARTGSGKTAAFVIPMIERLKTHSAKVGARGVIMSPSRELALQTLKVVKEFGRGTDLRTILLVGGDSLEEQFNSMTTNPDIIIATPG 207          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RH29_ARATH (Putative DEAD-box ATP-dependent RNA helicase 29 OS=Arabidopsis thaliana GN=RH29 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.740e-19
Identity = 57/140 (40.71%), Postives = 80/140 (57.14%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAED-PYGAL-ALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMKVLLQEDPDI 710
            F  L L        K+ G + PTP+Q   +P IL G DV+ +A+TGSGKTAAF +P+L +L +  P G + AL+++PTR+LA Q  +  K LG    LR   + GG  +    + L   P V+IATPG +  LL E  D+
Sbjct:   30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKGPDVIIATPGRLMHLLSEVDDM 169          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP10_NEUCR (ATP-dependent RNA helicase dbp-10 OS=Neurospora crassa GN=dbp-10 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.740e-19
Identity = 53/128 (41.41%), Postives = 75/128 (58.59%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLA--EDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPG 674
            F  +GL    ++     G   PTP+Q   IP ILE KDV+G+A+TGSGKTAAF +P++ RL       G+ AL+++P+RELA Q  +  K LG G  L+   + GG  L      + + P ++IATPG
Sbjct:  101 FQAMGLNAHLLRAITRKGFSVPTPIQRKAIPLILERKDVVGMARTGSGKTAAFVIPMIERLKGHSPRVGSRALIMSPSRELALQTLKVVKELGRGTDLKTVLLVGGDSLEEQFGMMASNPDIIIATPG 228          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RHLE_ECOLI (ATP-dependent RNA helicase rhlE OS=Escherichia coli (strain K12) GN=rhlE PE=1 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 2.273e-19
Identity = 53/134 (39.55%), Postives = 76/134 (56.72%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPIL-HRLAEDPYG-----ALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            F  LGL+   ++   E G R PTP+Q   IP +LEG+D++  AQTG+GKTA F LP+L H +   P+        AL++TPTRELA Q+ E  +     L++R   V GG+ +      L     V++ATPG +
Sbjct:    3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRL 136          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP10_SCLS1 (ATP-dependent RNA helicase dbp10 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp10 PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.273e-19
Identity = 51/128 (39.84%), Postives = 74/128 (57.81%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDP--YGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPG 674
            F  +GL    ++     G   PTP+Q   IP +L+ +DV+G+A+TGSGKTAAF +P++ +L       GA AL+++P+RELA Q  +  K  G G  L+C  + GG  L      +   P +VIATPG
Sbjct:   90 FQAMGLNSHLLKAISRKGFNVPTPIQRKTIPLVLDNQDVVGMARTGSGKTAAFVIPMIEKLRAHSVRVGARALIMSPSRELALQTLKVVKEFGRGTDLKCVLLVGGDSLEEQFGFMAANPDIVIATPG 217          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RH29_ORYSJ (DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa subsp. japonica GN=Os08g0416100 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19
Identity = 53/140 (37.86%), Postives = 79/140 (56.43%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGA--LALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMKVLLQEDPDI 710
            F  +GL E   +  +  G R PTP+Q   +P IL G D+  +A+TGSGKTAAF +P++ RL     GA   AL+++PTR+LA Q  +  + LG    L+   + GG  + +  + L   P ++IATPG +   L E  D+
Sbjct:   51 FESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQRLRRHDAGAGIRALILSPTRDLATQTLKFAQQLGKFTDLKISLIVGGDSMESQFEELAENPDIIIATPGRLVHHLAEVEDL 190          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RH29_ORYSI (DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa subsp. indica GN=OsI_028228 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19
Identity = 53/140 (37.86%), Postives = 79/140 (56.43%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGA--LALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMKVLLQEDPDI 710
            F  +GL E   +  +  G R PTP+Q   +P IL G D+  +A+TGSGKTAAF +P++ RL     GA   AL+++PTR+LA Q  +  + LG    L+   + GG  + +  + L   P ++IATPG +   L E  D+
Sbjct:   51 FESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQRLRRHDAGAGIRALILSPTRDLATQTLKFAQQLGKFTDLKISLIVGGDSMESQFEELAENPDIIIATPGRLVHHLAEVEDL 190          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DDX46_RAT (Probable ATP-dependent RNA helicase DDX46 OS=Rattus norvegicus GN=Ddx46 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19
Identity = 49/129 (37.98%), Postives = 75/129 (58.14%), Query Frame = 3
Query:  309 GLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPIL-----HRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            G++   + + K+ G  +PTP+QT  IP I+ G+D++G+A+TGSGKT AF LP+       R  E+  G +A+++TPTRELA Q+ ++ K     L LR   V GG  +      L     +++ TPG M
Sbjct:  378 GISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRM 506          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DDX46_PONAB (Probable ATP-dependent RNA helicase DDX46 OS=Pongo abelii GN=DDX46 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19
Identity = 49/129 (37.98%), Postives = 75/129 (58.14%), Query Frame = 3
Query:  309 GLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPIL-----HRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            G++   + + K+ G  +PTP+QT  IP I+ G+D++G+A+TGSGKT AF LP+       R  E+  G +A+++TPTRELA Q+ ++ K     L LR   V GG  +      L     +++ TPG M
Sbjct:  378 GISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRM 506          
The following BLAST results are available for this feature:
BLAST of CF836003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH45_ORYSJ1.333e-1936.43DEAD-box ATP-dependent RNA helicase 45 OS=Oryza sa... [more]
DBP10_PHANO1.333e-1939.84ATP-dependent RNA helicase DBP10 OS=Phaeosphaeria ... [more]
RH29_ARATH1.740e-1940.71Putative DEAD-box ATP-dependent RNA helicase 29 OS... [more]
DBP10_NEUCR1.740e-1941.41ATP-dependent RNA helicase dbp-10 OS=Neurospora cr... [more]
RHLE_ECOLI2.273e-1939.55ATP-dependent RNA helicase rhlE OS=Escherichia col... [more]
DBP10_SCLS12.273e-1939.84ATP-dependent RNA helicase dbp10 OS=Sclerotinia sc... [more]
RH29_ORYSJ2.969e-1937.86DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sa... [more]
RH29_ORYSI2.969e-1937.86DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sa... [more]
DDX46_RAT2.969e-1937.98Probable ATP-dependent RNA helicase DDX46 OS=Rattu... [more]
DDX46_PONAB2.969e-1937.98Probable ATP-dependent RNA helicase DDX46 OS=Pongo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836003 ID=CF836003; Name=CF836003; organism=Citrus sinensis; type=EST; length=712bp
GATGACTGCTCCCTTAAACACCCGAAAATCGAATCCTTGGCCTTCTCCAG
CCCTTAATACCTATATTCATCACCCTAAATGGAAAATTGTTGATTTATAC
TGACTGAGTAAACATGGACGAACACATCCACCTCGACGGGAACTTCCCTC
TCTTCGCCAAACCCAAATCTAAAACCAGAATCAAACCGGAACCGCAACCT
GAACCTGAACCGGAATCCAAAAACGCTAAAACCGCTCGACTCGAGAAATT
CACAACTCCCGATCCTAACTCTACCACCACCGACTCCACCGTCACTTTCG
CCGGCCTCGGCCTCGCCGAATGGGCGGTTCAGACATGCAAGGAGCTTGGC
ATGCGGCGGCCGACACCGGTCCAAACCCACTGCATACCCTAAATTCTCGA
GGGCAAGGACGTGCTGGGGCTGGCGCAGACCGGTAGCGGCAAAACCGCAG
CGTTCGCACTTCCGATACTCCACCGTTTGGCAGAGGACCCGTATGGGGCA
TTGGCACTGGTTATAACGCCGACAAGGGAGCTGGCGTACCAGTTGGCGGA
ACAGTTTAAGGCTCTGGGTTCGGGCTTGCATTTGAGGTGTGAGGCTGTGG
CTGGAGGAATGGATTTGTTGACCCCAGCTAAGAGCTTAATGAATAGGCCG
CATGTCGTTATTGCTACCCCTGGAATGATGAAGGTTTTGCTCCAAGAGGA
CCCTGATATCCC
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