CF836003

Overview
NameCF836003
Unique NameCF836003
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP8_SCLS1 (ATP-dependent RNA helicase dbp8 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp8 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.216e-32
Identity = 76/182 (41.76%), Postives = 103/182 (56.59%), Query Frame = 3
Query:  135 DGNFPLFAKPKSKTRIKXXXXXXXXXXSKNAKTARLEKFXXXXXXXXXXXXXXXFAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            DG+ PL A     +R+K          +K+       K                FA L +  W V +   + ++RPT +Q  CIP IL+G+D +G ++TGSGKT AFA+PIL + AEDP+G  ALV+TPTRELA Q+ EQFKA+ S   L+   + GG D+   A +L  RPHVVIATPG +
Sbjct:   69 DGDIPLIATTSVPSRVK----------AKSQNNLLEPKNFNNGAVLAPTDAQTTFAALDVKPWLVASLGAMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPILQKWAEDPFGIFALVLTPTRELALQIYEQFKAISSPQSLKAVLITGGSDMRPQATALAQRPHVVIATPGRL 240          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP8_SCHPO (ATP-dependent RNA helicase dbp8 OS=Schizosaccharomyces pombe GN=dbp8 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.812e-32
Identity = 66/135 (48.89%), Postives = 95/135 (70.37%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMKVLLQED 701
            F+ LG++ W + T K L +  PT +Q   I  ILEG++ +G A+TGSGKTAAFALPI+ + ++DP G  AL++TPTRELA Q+ EQF ALG+ L+L+   + GGMD++  +  L  RPHVV+ATPG +  L++ +
Sbjct:    9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLADLIRSN 143          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RRP3_SCHPO (ATP-dependent rRNA helicase rrp3 OS=Schizosaccharomyces pombe GN=rrp3 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.897e-32
Identity = 62/128 (48.44%), Postives = 91/128 (71.09%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            F  LG+ +   + C++LG + PTP+Q   IP +L  +DV+GLAQTGSGKTAAFALP++  L  +P    A+V+ PTRELAYQ++EQF+A+G  + +R   + GGMD++T A +L  +PHV++ TPG +
Sbjct:   48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRL 175          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RRP3_PHANO (ATP-dependent rRNA helicase RRP3 OS=Phaeosphaeria nodorum GN=RRP3 PE=3 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 8.897e-32
Identity = 63/128 (49.22%), Postives = 89/128 (69.53%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            FA LG+ E     C+ LG +  TP+QT  IP  L GKD++GLA+TGSGKTAAF LPIL  L + P     L++ PTRELAYQ+++Q  ALGS ++++C  + GGMD++  A +L  RPH+++A+PG +
Sbjct:  117 FADLGVREELCDACENLGYKTATPIQTESIPLALAGKDIIGLAETGSGKTAAFVLPILQALLDKPQAYFGLIMAPTRELAYQISQQVDALGSIINVKCATLVGGMDMVPQAIALSKRPHIIVASPGRL 244          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP8_BOTFB (ATP-dependent RNA helicase dbp8 OS=Botryotinia fuckeliana (strain B05.10) GN=dbp8 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.897e-32
Identity = 66/128 (51.56%), Postives = 89/128 (69.53%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            FA L +  W V +   + ++RPT +Q  CIP IL+G+D +G ++TGSGKT AFA+PIL + AEDP+G  ALV+TPTRELA Q+ EQFKA+ S   L+   + GG D+   A +L  RPH+VIATPG +
Sbjct:  118 FAALNVKPWLVGSLGSMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPILQKWAEDPFGIFALVLTPTRELALQIYEQFKAISSPQSLKAVLITGGSDMRPQATALAQRPHIVIATPGRL 245          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DDX49_DROME (Probable ATP-dependent RNA helicase Dbp45A OS=Drosophila melanogaster GN=Dbp45A PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.162e-31
Identity = 66/128 (51.56%), Postives = 88/128 (68.75%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            F  LGL  W V+   +LG++  TP+Q  CIP IL G+D +G A+TGSGKT AFALPIL RL+E+P    ALV+TPT ELAYQ++EQF   G  + +R   V+GG D +  ++ LM RPH+V+A PG +
Sbjct:    9 FQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERLSEEPVSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPHIVVAMPGRL 136          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DDX47_HUMAN (Probable ATP-dependent RNA helicase DDX47 OS=Homo sapiens GN=DDX47 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.162e-31
Identity = 62/128 (48.44%), Postives = 92/128 (71.88%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            F  LG+ +   + C +LG  +PT +Q   IP  L+G+D++GLA+TGSGKT AFALPIL+ L E P    ALV+TPTRELA+Q++EQF+ALGS + ++   + GG+D ++ + +L  +PH++IATPG +
Sbjct:   26 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRL 153          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP8_CRYNE (ATP-dependent RNA helicase DBP8 OS=Cryptococcus neoformans GN=DBP8 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.982e-31
Identity = 64/133 (48.12%), Postives = 91/133 (68.42%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMKVLLQ 695
            F  LGL+   +     + +++PT +Q  C+  IL G+D +G A+TGSGKT AFALPI+ R+A DP+G  A+V+TPTRELAYQL+EQF  +G  L L    + GGMD++  A+ L  RPH+++ATPG +  LL+
Sbjct:  154 FESLGLSHPLITALASINIKKPTEIQAACVEPILSGRDCIGGAKTGSGKTMAFALPIVERIARDPFGVWAVVLTPTRELAYQLSEQFLVIGKPLGLTTATIVGGMDMMKQAQELEARPHIIVATPGRLCDLLR 286          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RRP3_USTMA (ATP-dependent rRNA helicase RRP3 OS=Ustilago maydis GN=RRP3 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.589e-31
Identity = 62/129 (48.06%), Postives = 91/129 (70.54%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMK 683
            F+ LG+    V+ C  +G + PTP+Q   IP  L+ +DV+GLAQTGSGKTAAF +PIL  L ++P    A V+ PTRELAYQ+++Q +ALGS + +R   + GGMD+++ + +L  RPHV++ATPG ++
Sbjct:  106 FSDLGVIPQIVEACTNMGFKHPTPIQVKAIPEALQARDVIGLAQTGSGKTAAFTIPILQALWDNPKPFFACVLAPTRELAYQISQQVEALGSTIGVRSATIVGGMDMMSQSIALSKRPHVIVATPGRLQ 234          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RRP3_ASPCL (ATP-dependent rRNA helicase rrp3 OS=Aspergillus clavatus GN=rrp3 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.589e-31
Identity = 59/128 (46.09%), Postives = 91/128 (71.09%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            F  LG+ +   + C  +G + PTP+Q   IP  L+ +D++GLA+TGSGKTAAFALPIL  L + P     LV+ PTRELA+Q+++ F+ALGS +++RC  + GGMD+++ + +L  +PH+++ATPG +
Sbjct:   55 FKDLGIIDQLCEACATMGYKAPTPIQAESIPLALQDRDLIGLAETGSGKTAAFALPILQALMDKPQSFFGLVLAPTRELAFQISQSFEALGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATPGRL 182          
The following BLAST results are available for this feature:
BLAST of CF836003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP8_SCLS15.216e-3241.76ATP-dependent RNA helicase dbp8 OS=Sclerotinia scl... [more]
DBP8_SCHPO6.812e-3248.89ATP-dependent RNA helicase dbp8 OS=Schizosaccharom... [more]
RRP3_SCHPO8.897e-3248.44ATP-dependent rRNA helicase rrp3 OS=Schizosaccharo... [more]
RRP3_PHANO8.897e-3249.22ATP-dependent rRNA helicase RRP3 OS=Phaeosphaeria ... [more]
DBP8_BOTFB8.897e-3251.56ATP-dependent RNA helicase dbp8 OS=Botryotinia fuc... [more]
DDX49_DROME1.162e-3151.56Probable ATP-dependent RNA helicase Dbp45A OS=Dros... [more]
DDX47_HUMAN1.162e-3148.44Probable ATP-dependent RNA helicase DDX47 OS=Homo ... [more]
DBP8_CRYNE1.982e-3148.12ATP-dependent RNA helicase DBP8 OS=Cryptococcus ne... [more]
RRP3_USTMA2.589e-3148.06ATP-dependent rRNA helicase RRP3 OS=Ustilago maydi... [more]
RRP3_ASPCL2.589e-3146.09ATP-dependent rRNA helicase rrp3 OS=Aspergillus cl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836003 ID=CF836003; Name=CF836003; organism=Citrus sinensis; type=EST; length=712bp
GATGACTGCTCCCTTAAACACCCGAAAATCGAATCCTTGGCCTTCTCCAG
CCCTTAATACCTATATTCATCACCCTAAATGGAAAATTGTTGATTTATAC
TGACTGAGTAAACATGGACGAACACATCCACCTCGACGGGAACTTCCCTC
TCTTCGCCAAACCCAAATCTAAAACCAGAATCAAACCGGAACCGCAACCT
GAACCTGAACCGGAATCCAAAAACGCTAAAACCGCTCGACTCGAGAAATT
CACAACTCCCGATCCTAACTCTACCACCACCGACTCCACCGTCACTTTCG
CCGGCCTCGGCCTCGCCGAATGGGCGGTTCAGACATGCAAGGAGCTTGGC
ATGCGGCGGCCGACACCGGTCCAAACCCACTGCATACCCTAAATTCTCGA
GGGCAAGGACGTGCTGGGGCTGGCGCAGACCGGTAGCGGCAAAACCGCAG
CGTTCGCACTTCCGATACTCCACCGTTTGGCAGAGGACCCGTATGGGGCA
TTGGCACTGGTTATAACGCCGACAAGGGAGCTGGCGTACCAGTTGGCGGA
ACAGTTTAAGGCTCTGGGTTCGGGCTTGCATTTGAGGTGTGAGGCTGTGG
CTGGAGGAATGGATTTGTTGACCCCAGCTAAGAGCTTAATGAATAGGCCG
CATGTCGTTATTGCTACCCCTGGAATGATGAAGGTTTTGCTCCAAGAGGA
CCCTGATATCCC
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