CF836003
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP8_SCLS1 (ATP-dependent RNA helicase dbp8 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp8 PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 5.216e-32 Identity = 76/182 (41.76%), Postives = 103/182 (56.59%), Query Frame = 3 Query: 135 DGNFPLFAKPKSKTRIKXXXXXXXXXXSKNAKTARLEKFXXXXXXXXXXXXXXXFAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680 DG+ PL A +R+K +K+ K FA L + W V + + ++RPT +Q CIP IL+G+D +G ++TGSGKT AFA+PIL + AEDP+G ALV+TPTRELA Q+ EQFKA+ S L+ + GG D+ A +L RPHVVIATPG + Sbjct: 69 DGDIPLIATTSVPSRVK----------AKSQNNLLEPKNFNNGAVLAPTDAQTTFAALDVKPWLVASLGAMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPILQKWAEDPFGIFALVLTPTRELALQIYEQFKAISSPQSLKAVLITGGSDMRPQATALAQRPHVVIATPGRL 240
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP8_SCHPO (ATP-dependent RNA helicase dbp8 OS=Schizosaccharomyces pombe GN=dbp8 PE=2 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 6.812e-32 Identity = 66/135 (48.89%), Postives = 95/135 (70.37%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMKVLLQED 701 F+ LG++ W + T K L + PT +Q I ILEG++ +G A+TGSGKTAAFALPI+ + ++DP G AL++TPTRELA Q+ EQF ALG+ L+L+ + GGMD++ + L RPHVV+ATPG + L++ + Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLADLIRSN 143
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RRP3_SCHPO (ATP-dependent rRNA helicase rrp3 OS=Schizosaccharomyces pombe GN=rrp3 PE=2 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 8.897e-32 Identity = 62/128 (48.44%), Postives = 91/128 (71.09%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680 F LG+ + + C++LG + PTP+Q IP +L +DV+GLAQTGSGKTAAFALP++ L +P A+V+ PTRELAYQ++EQF+A+G + +R + GGMD++T A +L +PHV++ TPG + Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRL 175
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RRP3_PHANO (ATP-dependent rRNA helicase RRP3 OS=Phaeosphaeria nodorum GN=RRP3 PE=3 SV=2) HSP 1 Score: 137.117 bits (344), Expect = 8.897e-32 Identity = 63/128 (49.22%), Postives = 89/128 (69.53%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680 FA LG+ E C+ LG + TP+QT IP L GKD++GLA+TGSGKTAAF LPIL L + P L++ PTRELAYQ+++Q ALGS ++++C + GGMD++ A +L RPH+++A+PG + Sbjct: 117 FADLGVREELCDACENLGYKTATPIQTESIPLALAGKDIIGLAETGSGKTAAFVLPILQALLDKPQAYFGLIMAPTRELAYQISQQVDALGSIINVKCATLVGGMDMVPQAIALSKRPHIIVASPGRL 244
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP8_BOTFB (ATP-dependent RNA helicase dbp8 OS=Botryotinia fuckeliana (strain B05.10) GN=dbp8 PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 8.897e-32 Identity = 66/128 (51.56%), Postives = 89/128 (69.53%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680 FA L + W V + + ++RPT +Q CIP IL+G+D +G ++TGSGKT AFA+PIL + AEDP+G ALV+TPTRELA Q+ EQFKA+ S L+ + GG D+ A +L RPH+VIATPG + Sbjct: 118 FAALNVKPWLVGSLGSMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPILQKWAEDPFGIFALVLTPTRELALQIYEQFKAISSPQSLKAVLITGGSDMRPQATALAQRPHIVIATPGRL 245
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DDX49_DROME (Probable ATP-dependent RNA helicase Dbp45A OS=Drosophila melanogaster GN=Dbp45A PE=2 SV=2) HSP 1 Score: 136.732 bits (343), Expect = 1.162e-31 Identity = 66/128 (51.56%), Postives = 88/128 (68.75%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680 F LGL W V+ +LG++ TP+Q CIP IL G+D +G A+TGSGKT AFALPIL RL+E+P ALV+TPT ELAYQ++EQF G + +R V+GG D + ++ LM RPH+V+A PG + Sbjct: 9 FQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERLSEEPVSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPHIVVAMPGRL 136
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DDX47_HUMAN (Probable ATP-dependent RNA helicase DDX47 OS=Homo sapiens GN=DDX47 PE=1 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.162e-31 Identity = 62/128 (48.44%), Postives = 92/128 (71.88%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680 F LG+ + + C +LG +PT +Q IP L+G+D++GLA+TGSGKT AFALPIL+ L E P ALV+TPTRELA+Q++EQF+ALGS + ++ + GG+D ++ + +L +PH++IATPG + Sbjct: 26 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRL 153
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP8_CRYNE (ATP-dependent RNA helicase DBP8 OS=Cryptococcus neoformans GN=DBP8 PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 1.982e-31 Identity = 64/133 (48.12%), Postives = 91/133 (68.42%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMKVLLQ 695 F LGL+ + + +++PT +Q C+ IL G+D +G A+TGSGKT AFALPI+ R+A DP+G A+V+TPTRELAYQL+EQF +G L L + GGMD++ A+ L RPH+++ATPG + LL+ Sbjct: 154 FESLGLSHPLITALASINIKKPTEIQAACVEPILSGRDCIGGAKTGSGKTMAFALPIVERIARDPFGVWAVVLTPTRELAYQLSEQFLVIGKPLGLTTATIVGGMDMMKQAQELEARPHIIVATPGRLCDLLR 286
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RRP3_USTMA (ATP-dependent rRNA helicase RRP3 OS=Ustilago maydis GN=RRP3 PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.589e-31 Identity = 62/129 (48.06%), Postives = 91/129 (70.54%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMK 683 F+ LG+ V+ C +G + PTP+Q IP L+ +DV+GLAQTGSGKTAAF +PIL L ++P A V+ PTRELAYQ+++Q +ALGS + +R + GGMD+++ + +L RPHV++ATPG ++ Sbjct: 106 FSDLGVIPQIVEACTNMGFKHPTPIQVKAIPEALQARDVIGLAQTGSGKTAAFTIPILQALWDNPKPFFACVLAPTRELAYQISQQVEALGSTIGVRSATIVGGMDMMSQSIALSKRPHVIVATPGRLQ 234
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RRP3_ASPCL (ATP-dependent rRNA helicase rrp3 OS=Aspergillus clavatus GN=rrp3 PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.589e-31 Identity = 59/128 (46.09%), Postives = 91/128 (71.09%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680 F LG+ + + C +G + PTP+Q IP L+ +D++GLA+TGSGKTAAFALPIL L + P LV+ PTRELA+Q+++ F+ALGS +++RC + GGMD+++ + +L +PH+++ATPG + Sbjct: 55 FKDLGIIDQLCEACATMGYKAPTPIQAESIPLALQDRDLIGLAETGSGKTAAFALPILQALMDKPQSFFGLVLAPTRELAFQISQSFEALGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATPGRL 182 The following BLAST results are available for this feature:
BLAST of CF836003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836003 ID=CF836003; Name=CF836003; organism=Citrus sinensis; type=EST; length=712bpback to top |