CF836003

Overview
NameCF836003
Unique NameCF836003
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: FAL1_SCHPO (ATP-dependent RNA helicase fal1 OS=Schizosaccharomyces pombe GN=tif412 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14
Identity = 46/133 (34.59%), Postives = 72/133 (54.14%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMKVLLQ 695
            F  + L E  ++     G   P+ VQ+  I  I +G+DV+  AQ+G+GKTA F++ IL  +        AL+++PTRELA Q+     ALG  ++++C A  GG  +    K L    HVV  TPG +  +++
Sbjct:   23 FEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTDMIR 155          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP4_GIBZE (ATP-dependent RNA helicase DBP4 OS=Gibberella zeae GN=DBP4 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14
Identity = 46/110 (41.82%), Postives = 66/110 (60.00%), Query Frame = 3
Query:  363 TPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY----GALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            T VQ   +P  L+GKD+LG A+TGSGKT AF +P+L +L    +    G  AL+I+PTRELA Q+ E  + +G+        V GG  L   A+ L +R ++++ TPG M
Sbjct:   75 TDVQARAVPLALKGKDILGAAKTGSGKTLAFLIPVLEKLYRAQWTEFDGLGALIISPTRELAAQIFEVLRKVGTKHSFSAGLVIGGKSLKEEAERL-DRMNILVCTPGRM 183          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP3_SCHPO (ATP-dependent RNA helicase dbp3 OS=Schizosaccharomyces pombe GN=dbp3 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14
Identity = 46/118 (38.98%), Postives = 69/118 (58.47%), Query Frame = 3
Query:  354 RRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALP---ILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMKVLLQE 698
            + PTP+Q    P +L G+DV+G+A+TGSGKT AF +P    L+ L+++      LV++PTRELA Q  E   +L  G +L+   V GG      A++  N   V+I TPG +  L+ +
Sbjct:  186 KEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARAAKN-ASVIIGTPGRLLDLIND 302          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP3_GIBZE (ATP-dependent RNA helicase DBP3 OS=Gibberella zeae GN=DBP3 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14
Identity = 44/117 (37.61%), Postives = 73/117 (62.39%), Query Frame = 3
Query:  354 RRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY-GALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNR-PHVVIATPGMMKVLLQE 698
            + PTP+Q+   P  L G+DV+G+A+TGSGKT AFALP +  ++   +    A+V++PTRELA Q  EQ  ++ +   ++C  + GG       ++L+NR   +++ATPG +K  + +
Sbjct:  182 KAPTPIQSASWPFTLSGRDVIGVAETGSGKTMAFALPCVEAISALKHKHTKAVVVSPTRELAMQTYEQMASVAALNRMKCVCLYGGAS-KDDQRNLLNRGADIIVATPGRLKDFMSD 297          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP2_CHAGB (ATP-dependent RNA helicase DBP2 OS=Chaetomium globosum GN=DBP2 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14
Identity = 46/138 (33.33%), Postives = 68/138 (49.28%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY-----GALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMKVLLQ 695
            F   G   + +   K  G   PT +Q+   P  L G+DV+G+A+TGSGKT  + LP +  +   P      G + LV+ PTRELA Q+ ++    G    +R   V GG+      + L     V IATPG +  +L+
Sbjct:  138 FDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKGPQTRDLSRGVEVCIATPGRLIDMLE 275          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RH37_ORYSJ (DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa subsp. japonica GN=PL10A PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 48/143 (33.57%), Postives = 76/143 (53.15%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPIL-----HRLAEDPYGA-----LALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMKVLLQ 695
            FA + L +   +  +     +PTPVQ + IP  + G+D++  AQTGSGKTAAF  PI+      R  + P G+     LAL+++PTREL+ Q+ E+ +       +R     GG  +    + L     +++ATPG +  LL+
Sbjct:  176 FAEIDLGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIISGIMSSRPPQRPRGSRTAYPLALILSPTRELSVQIHEEARKFAYQTGVRVVVAYGGAPIHQQLRELERGVEILVATPGRLMDLLE 318          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: PRP5_YARLI (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Yarrowia lipolytica GN=PRP5 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 49/142 (34.51%), Postives = 73/142 (51.41%), Query Frame = 3
Query:  306 LGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPIL----HRLAEDPY-----GA----LALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMKVLL 692
            LGL    +    +L   +PT +Q   IP ++ G+DV+ +A+TGSGKT AF LP+L    HR+  + +     GA    L ++ITPTREL  Q+    +   + L L      GG  +     +L    H+++ TPG M  LL
Sbjct:  383 LGLPGPTMGVLNDLRYDKPTSIQAQAIPAVMSGRDVISVAKTGSGKTLAFLLPMLRHIKHRVGVETHTTTLSGASSHPLGVIITPTRELCVQIYRDLRPFLAALELTAVCAYGGSPIKDQIAALKKGTHIIVCTPGRMIDLL 524          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: PRP28_PICST (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Pichia stipitis GN=PRP28 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 44/121 (36.36%), Postives = 65/121 (53.72%), Query Frame = 3
Query:  360 PTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPIL--------------HRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            PTP+Q   IP  L  +DV+G+A+TGSGKT AF +P+L              H+  ++    L L++ PTRELA Q+ ++ +  G  L L   ++ GG        S+    HVV+ATPG +
Sbjct:   80 PTPIQRAAIPLALNQRDVVGIAETGSGKTLAFLIPLLSYILNTDKNYLEYEHQQEQNYNKPLGLILAPTRELAQQITKEAQKFGDRLGLNVVSIIGGHQYEETVHSIRTGVHVVVATPGRL 200          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: MAK5_MAGGR (ATP-dependent RNA helicase MAK5 OS=Magnaporthe grisea GN=MAK5 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 54/141 (38.30%), Postives = 79/141 (56.03%), Query Frame = 3
Query:  306 LGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILH------------RLAE-DPYGALALVITPTRELAYQLAEQFKALGSGLHLR---CEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            LGL+E  + +  +L   +PT +Q   IP IL G DV+G A TGSGKT AF +PI+             R+AE +    +ALV++PTRELA+QL +  K L +GL      C +V GG+ +    + L  +  +V+ TPG +
Sbjct:  217 LGLSEEIMSSIAKLKFAKPTAIQAATIPEILAGHDVVGKASTGSGKTLAFGIPIVEKWLSINASTQSKRVAEGETKTPIALVLSPTRELAHQLTDHIKNLCAGLATSPYVC-SVTGGLSVHKQQRQL-EKADIVVGTPGRL 355          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: MAK5_LODEL (ATP-dependent RNA helicase MAK5 OS=Lodderomyces elongisporus GN=MAK5 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 52/165 (31.52%), Postives = 78/165 (47.27%), Query Frame = 3
Query:  306 LGLAEWA---VQTC---------KELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPIL---------------HRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCE---AVAGGMDLLTPAKSLMNRPHVVIATPGMMKVLLQEDPDI 710
            + L EW    ++TC           +    PTP+Q   IP  LEGKDV+G A TGSGKT A+ +PIL                ++   P G   ++  PTRELA+Q+ +    +     L  +   +V GG+ +    + L   P +++ATPG M  L Q D ++
Sbjct:  212 IDLPEWGEDKIETCLSPYILNGLSNMKFTTPTPIQKRTIPLALEGKDVIGKATTGSGKTLAYGIPILEKYIQSLDTVKRKVREKVVNHPTG---IIFAPTRELAHQVVDHLNKIAQYSPLSTKGIVSVTGGLSIQKQERLLSFGPGIIVATPGRMLELCQNDQEL 373          
The following BLAST results are available for this feature:
BLAST of CF836003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FAL1_SCHPO1.291e-1434.59ATP-dependent RNA helicase fal1 OS=Schizosaccharom... [more]
DBP4_GIBZE1.291e-1441.82ATP-dependent RNA helicase DBP4 OS=Gibberella zeae... [more]
DBP3_SCHPO1.291e-1438.98ATP-dependent RNA helicase dbp3 OS=Schizosaccharom... [more]
DBP3_GIBZE1.291e-1437.61ATP-dependent RNA helicase DBP3 OS=Gibberella zeae... [more]
DBP2_CHAGB1.291e-1433.33ATP-dependent RNA helicase DBP2 OS=Chaetomium glob... [more]
RH37_ORYSJ1.686e-1433.57DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sa... [more]
PRP5_YARLI1.686e-1434.51Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
PRP28_PICST1.686e-1436.36Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
MAK5_MAGGR1.686e-1438.30ATP-dependent RNA helicase MAK5 OS=Magnaporthe gri... [more]
MAK5_LODEL1.686e-1431.52ATP-dependent RNA helicase MAK5 OS=Lodderomyces el... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836003 ID=CF836003; Name=CF836003; organism=Citrus sinensis; type=EST; length=712bp
GATGACTGCTCCCTTAAACACCCGAAAATCGAATCCTTGGCCTTCTCCAG
CCCTTAATACCTATATTCATCACCCTAAATGGAAAATTGTTGATTTATAC
TGACTGAGTAAACATGGACGAACACATCCACCTCGACGGGAACTTCCCTC
TCTTCGCCAAACCCAAATCTAAAACCAGAATCAAACCGGAACCGCAACCT
GAACCTGAACCGGAATCCAAAAACGCTAAAACCGCTCGACTCGAGAAATT
CACAACTCCCGATCCTAACTCTACCACCACCGACTCCACCGTCACTTTCG
CCGGCCTCGGCCTCGCCGAATGGGCGGTTCAGACATGCAAGGAGCTTGGC
ATGCGGCGGCCGACACCGGTCCAAACCCACTGCATACCCTAAATTCTCGA
GGGCAAGGACGTGCTGGGGCTGGCGCAGACCGGTAGCGGCAAAACCGCAG
CGTTCGCACTTCCGATACTCCACCGTTTGGCAGAGGACCCGTATGGGGCA
TTGGCACTGGTTATAACGCCGACAAGGGAGCTGGCGTACCAGTTGGCGGA
ACAGTTTAAGGCTCTGGGTTCGGGCTTGCATTTGAGGTGTGAGGCTGTGG
CTGGAGGAATGGATTTGTTGACCCCAGCTAAGAGCTTAATGAATAGGCCG
CATGTCGTTATTGCTACCCCTGGAATGATGAAGGTTTTGCTCCAAGAGGA
CCCTGATATCCC
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