CF836003
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: FAL1_SCHPO (ATP-dependent RNA helicase fal1 OS=Schizosaccharomyces pombe GN=tif412 PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14 Identity = 46/133 (34.59%), Postives = 72/133 (54.14%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMKVLLQ 695 F + L E ++ G P+ VQ+ I I +G+DV+ AQ+G+GKTA F++ IL + AL+++PTRELA Q+ ALG ++++C A GG + K L HVV TPG + +++ Sbjct: 23 FEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTDMIR 155
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP4_GIBZE (ATP-dependent RNA helicase DBP4 OS=Gibberella zeae GN=DBP4 PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14 Identity = 46/110 (41.82%), Postives = 66/110 (60.00%), Query Frame = 3 Query: 363 TPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY----GALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680 T VQ +P L+GKD+LG A+TGSGKT AF +P+L +L + G AL+I+PTRELA Q+ E + +G+ V GG L A+ L +R ++++ TPG M Sbjct: 75 TDVQARAVPLALKGKDILGAAKTGSGKTLAFLIPVLEKLYRAQWTEFDGLGALIISPTRELAAQIFEVLRKVGTKHSFSAGLVIGGKSLKEEAERL-DRMNILVCTPGRM 183
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP3_SCHPO (ATP-dependent RNA helicase dbp3 OS=Schizosaccharomyces pombe GN=dbp3 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14 Identity = 46/118 (38.98%), Postives = 69/118 (58.47%), Query Frame = 3 Query: 354 RRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALP---ILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMKVLLQE 698 + PTP+Q P +L G+DV+G+A+TGSGKT AF +P L+ L+++ LV++PTRELA Q E +L G +L+ V GG A++ N V+I TPG + L+ + Sbjct: 186 KEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARAAKN-ASVIIGTPGRLLDLIND 302
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP3_GIBZE (ATP-dependent RNA helicase DBP3 OS=Gibberella zeae GN=DBP3 PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14 Identity = 44/117 (37.61%), Postives = 73/117 (62.39%), Query Frame = 3 Query: 354 RRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY-GALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNR-PHVVIATPGMMKVLLQE 698 + PTP+Q+ P L G+DV+G+A+TGSGKT AFALP + ++ + A+V++PTRELA Q EQ ++ + ++C + GG ++L+NR +++ATPG +K + + Sbjct: 182 KAPTPIQSASWPFTLSGRDVIGVAETGSGKTMAFALPCVEAISALKHKHTKAVVVSPTRELAMQTYEQMASVAALNRMKCVCLYGGAS-KDDQRNLLNRGADIIVATPGRLKDFMSD 297
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP2_CHAGB (ATP-dependent RNA helicase DBP2 OS=Chaetomium globosum GN=DBP2 PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14 Identity = 46/138 (33.33%), Postives = 68/138 (49.28%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY-----GALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMKVLLQ 695 F G + + K G PT +Q+ P L G+DV+G+A+TGSGKT + LP + + P G + LV+ PTRELA Q+ ++ G +R V GG+ + L V IATPG + +L+ Sbjct: 138 FDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKGPQTRDLSRGVEVCIATPGRLIDMLE 275
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RH37_ORYSJ (DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa subsp. japonica GN=PL10A PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14 Identity = 48/143 (33.57%), Postives = 76/143 (53.15%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPIL-----HRLAEDPYGA-----LALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMKVLLQ 695 FA + L + + + +PTPVQ + IP + G+D++ AQTGSGKTAAF PI+ R + P G+ LAL+++PTREL+ Q+ E+ + +R GG + + L +++ATPG + LL+ Sbjct: 176 FAEIDLGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIISGIMSSRPPQRPRGSRTAYPLALILSPTRELSVQIHEEARKFAYQTGVRVVVAYGGAPIHQQLRELERGVEILVATPGRLMDLLE 318
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: PRP5_YARLI (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Yarrowia lipolytica GN=PRP5 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14 Identity = 49/142 (34.51%), Postives = 73/142 (51.41%), Query Frame = 3 Query: 306 LGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPIL----HRLAEDPY-----GA----LALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMKVLL 692 LGL + +L +PT +Q IP ++ G+DV+ +A+TGSGKT AF LP+L HR+ + + GA L ++ITPTREL Q+ + + L L GG + +L H+++ TPG M LL Sbjct: 383 LGLPGPTMGVLNDLRYDKPTSIQAQAIPAVMSGRDVISVAKTGSGKTLAFLLPMLRHIKHRVGVETHTTTLSGASSHPLGVIITPTRELCVQIYRDLRPFLAALELTAVCAYGGSPIKDQIAALKKGTHIIVCTPGRMIDLL 524
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: PRP28_PICST (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Pichia stipitis GN=PRP28 PE=3 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14 Identity = 44/121 (36.36%), Postives = 65/121 (53.72%), Query Frame = 3 Query: 360 PTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPIL--------------HRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680 PTP+Q IP L +DV+G+A+TGSGKT AF +P+L H+ ++ L L++ PTRELA Q+ ++ + G L L ++ GG S+ HVV+ATPG + Sbjct: 80 PTPIQRAAIPLALNQRDVVGIAETGSGKTLAFLIPLLSYILNTDKNYLEYEHQQEQNYNKPLGLILAPTRELAQQITKEAQKFGDRLGLNVVSIIGGHQYEETVHSIRTGVHVVVATPGRL 200
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: MAK5_MAGGR (ATP-dependent RNA helicase MAK5 OS=Magnaporthe grisea GN=MAK5 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14 Identity = 54/141 (38.30%), Postives = 79/141 (56.03%), Query Frame = 3 Query: 306 LGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILH------------RLAE-DPYGALALVITPTRELAYQLAEQFKALGSGLHLR---CEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680 LGL+E + + +L +PT +Q IP IL G DV+G A TGSGKT AF +PI+ R+AE + +ALV++PTRELA+QL + K L +GL C +V GG+ + + L + +V+ TPG + Sbjct: 217 LGLSEEIMSSIAKLKFAKPTAIQAATIPEILAGHDVVGKASTGSGKTLAFGIPIVEKWLSINASTQSKRVAEGETKTPIALVLSPTRELAHQLTDHIKNLCAGLATSPYVC-SVTGGLSVHKQQRQL-EKADIVVGTPGRL 355
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: MAK5_LODEL (ATP-dependent RNA helicase MAK5 OS=Lodderomyces elongisporus GN=MAK5 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14 Identity = 52/165 (31.52%), Postives = 78/165 (47.27%), Query Frame = 3 Query: 306 LGLAEWA---VQTC---------KELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPIL---------------HRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCE---AVAGGMDLLTPAKSLMNRPHVVIATPGMMKVLLQEDPDI 710 + L EW ++TC + PTP+Q IP LEGKDV+G A TGSGKT A+ +PIL ++ P G ++ PTRELA+Q+ + + L + +V GG+ + + L P +++ATPG M L Q D ++ Sbjct: 212 IDLPEWGEDKIETCLSPYILNGLSNMKFTTPTPIQKRTIPLALEGKDVIGKATTGSGKTLAYGIPILEKYIQSLDTVKRKVREKVVNHPTG---IIFAPTRELAHQVVDHLNKIAQYSPLSTKGIVSVTGGLSIQKQERLLSFGPGIIVATPGRMLELCQNDQEL 373 The following BLAST results are available for this feature:
BLAST of CF836003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836003 ID=CF836003; Name=CF836003; organism=Citrus sinensis; type=EST; length=712bpback to top |