CF836003

Overview
NameCF836003
Unique NameCF836003
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: FAL1_ASPNC (ATP-dependent RNA helicase fal1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=fal1 PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 45/133 (33.83%), Postives = 73/133 (54.89%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMKVLLQ 695
            F  + L E  ++     G   P+ VQ+  I  I +G+D +  AQ+G+GKTA F++ IL  +      + ALV++PTRELA Q+     ALG  ++++C A  GG ++    + L    HVV  TPG +  +++
Sbjct:   27 FEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVVRESQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMIR 159          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: FAL1_ASPCL (ATP-dependent RNA helicase fal1 OS=Aspergillus clavatus GN=fal1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 45/133 (33.83%), Postives = 72/133 (54.14%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMKVLLQ 695
            F  + L E  ++     G   P+ VQ+  I  I +G+D +  AQ+G+GKTA F++ IL  +        ALV++PTRELA Q+     ALG  ++++C A  GG ++    + L    HVV  TPG +  +++
Sbjct:   27 FEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTAVRETQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMIR 159          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DRS1_ASPCL (ATP-dependent RNA helicase drs1 OS=Aspergillus clavatus GN=drs1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 49/129 (37.98%), Postives = 64/129 (49.61%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY---GALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPG 674
            F    L+   ++    +    PTP+Q   IP  L GKD++G A TGSGKTAAF +PIL RL   P     +   ++ PTRELA Q       L +   +    + GG  L      L  RP V+IATPG
Sbjct:  308 FQDFNLSRPILRGLASVNFTTPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATHTDVTFCQLVGGFSLREQENILKKRPDVIIATPG 436          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DDX6_PONAB (Probable ATP-dependent RNA helicase DDX6 OS=Pongo abelii GN=DDX6 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 46/123 (37.40%), Postives = 70/123 (56.91%), Query Frame = 3
Query:  342 ELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLA----EQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMKVLLQE 698
            E+G  +P+P+Q   IP  L G+D+L  A+ G+GK+ A+ +P+L RL        A+VI PTRELA Q++    +  K +G     +  A  GG +L      L +  HVVIATPG +  L+++
Sbjct:  113 EMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGA---KVMATTGGTNLRGDIMRLDDTVHVVIATPGRILDLIKK 232          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DDX6_CAVPO (Probable ATP-dependent RNA helicase DDX6 (Fragment) OS=Cavia porcellus GN=DDX6 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 46/123 (37.40%), Postives = 70/123 (56.91%), Query Frame = 3
Query:  342 ELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLA----EQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMKVLLQE 698
            E+G  +P+P+Q   IP  L G+D+L  A+ G+GK+ A+ +P+L RL        A+VI PTRELA Q++    +  K +G     +  A  GG +L      L +  HVVIATPG +  L+++
Sbjct:  102 EMGWEKPSPIQEESIPIALTGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGA---KVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKK 221          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP4_NEUCR (ATP-dependent RNA helicase dbp-4 OS=Neurospora crassa GN=dbp-4 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 50/132 (37.88%), Postives = 70/132 (53.03%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY----GALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            F+ L L E      +       T VQ   IP  L+G+D+LG A+TGSGKT AF +P+L +L    +    G  AL+I+PTRELA Q+ E  + +G         V GG  L   A+ L  R ++++ TPG M
Sbjct:   59 FSDLPLCEPTASGLRASHFEVLTDVQRAAIPLALKGQDILGAARTGSGKTLAFLVPVLEKLYRARWTEYDGLGALIISPTRELAVQIFEVLRKIGRNHSFSAGLVIGGKSLKEEAERL-GRMNILVCTPGRM 189          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP3_NEOFI (ATP-dependent RNA helicase dbp3 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp3 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 41/116 (35.34%), Postives = 67/116 (57.76%), Query Frame = 3
Query:  360 PTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAED------PYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMKVL 689
            PTP+Q+   P +  G+DV+G+A+TGSGKT AF LP + ++ +            A++I+PTRELA Q+ +Q    G+ + +R   + GG+      +  +    +V+ATPG +K L
Sbjct:  108 PTPIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCIKKILDSGKVKRKHARPAAVIISPTRELAMQIYDQLSKFGASVDIRVTCIYGGVK-KDEQREALKTAAIVVATPGRLKDL 222          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP3_ASPFU (ATP-dependent RNA helicase dbp3 OS=Aspergillus fumigatus GN=dbp3 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 41/116 (35.34%), Postives = 67/116 (57.76%), Query Frame = 3
Query:  360 PTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAED------PYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMKVL 689
            PTP+Q+   P +  G+DV+G+A+TGSGKT AF LP + ++ +            A++I+PTRELA Q+ +Q    G+ + +R   + GG+      +  +    +V+ATPG +K L
Sbjct:  108 PTPIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCIKKILDSGKVKRKHARPAAVIISPTRELAMQIYDQLSKFGASVDIRVTCIYGGVK-KDEQREALKTAAIVVATPGRLKDL 222          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP2_YEAST (ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae GN=DBP2 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 45/138 (32.61%), Postives = 69/138 (50.00%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY-----GALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMKVLLQ 695
            F   G  ++ +   K  G  +PT +Q    P  L G+D++G+A TGSGKT ++ LP +  +   P      G + LV+ PTRELA Q+  +    G    +R   V GG+      + L     +VIATPG +  +L+
Sbjct:  115 FDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDMLE 252          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP2_YEAS7 (ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP2 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 45/138 (32.61%), Postives = 69/138 (50.00%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY-----GALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMKVLLQ 695
            F   G  ++ +   K  G  +PT +Q    P  L G+D++G+A TGSGKT ++ LP +  +   P      G + LV+ PTRELA Q+  +    G    +R   V GG+      + L     +VIATPG +  +L+
Sbjct:  115 FDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDMLE 252          
The following BLAST results are available for this feature:
BLAST of CF836003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FAL1_ASPNC6.406e-1433.83ATP-dependent RNA helicase fal1 OS=Aspergillus nig... [more]
FAL1_ASPCL6.406e-1433.83ATP-dependent RNA helicase fal1 OS=Aspergillus cla... [more]
DRS1_ASPCL6.406e-1437.98ATP-dependent RNA helicase drs1 OS=Aspergillus cla... [more]
DDX6_PONAB6.406e-1437.40Probable ATP-dependent RNA helicase DDX6 OS=Pongo ... [more]
DDX6_CAVPO6.406e-1437.40Probable ATP-dependent RNA helicase DDX6 (Fragment... [more]
DBP4_NEUCR6.406e-1437.88ATP-dependent RNA helicase dbp-4 OS=Neurospora cra... [more]
DBP3_NEOFI6.406e-1435.34ATP-dependent RNA helicase dbp3 OS=Neosartorya fis... [more]
DBP3_ASPFU6.406e-1435.34ATP-dependent RNA helicase dbp3 OS=Aspergillus fum... [more]
DBP2_YEAST6.406e-1432.61ATP-dependent RNA helicase DBP2 OS=Saccharomyces c... [more]
DBP2_YEAS76.406e-1432.61ATP-dependent RNA helicase DBP2 OS=Saccharomyces c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836003 ID=CF836003; Name=CF836003; organism=Citrus sinensis; type=EST; length=712bp
GATGACTGCTCCCTTAAACACCCGAAAATCGAATCCTTGGCCTTCTCCAG
CCCTTAATACCTATATTCATCACCCTAAATGGAAAATTGTTGATTTATAC
TGACTGAGTAAACATGGACGAACACATCCACCTCGACGGGAACTTCCCTC
TCTTCGCCAAACCCAAATCTAAAACCAGAATCAAACCGGAACCGCAACCT
GAACCTGAACCGGAATCCAAAAACGCTAAAACCGCTCGACTCGAGAAATT
CACAACTCCCGATCCTAACTCTACCACCACCGACTCCACCGTCACTTTCG
CCGGCCTCGGCCTCGCCGAATGGGCGGTTCAGACATGCAAGGAGCTTGGC
ATGCGGCGGCCGACACCGGTCCAAACCCACTGCATACCCTAAATTCTCGA
GGGCAAGGACGTGCTGGGGCTGGCGCAGACCGGTAGCGGCAAAACCGCAG
CGTTCGCACTTCCGATACTCCACCGTTTGGCAGAGGACCCGTATGGGGCA
TTGGCACTGGTTATAACGCCGACAAGGGAGCTGGCGTACCAGTTGGCGGA
ACAGTTTAAGGCTCTGGGTTCGGGCTTGCATTTGAGGTGTGAGGCTGTGG
CTGGAGGAATGGATTTGTTGACCCCAGCTAAGAGCTTAATGAATAGGCCG
CATGTCGTTATTGCTACCCCTGGAATGATGAAGGTTTTGCTCCAAGAGGA
CCCTGATATCCC
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