CF836003
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: FAL1_ASPNC (ATP-dependent RNA helicase fal1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=fal1 PE=3 SV=2) HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14 Identity = 45/133 (33.83%), Postives = 73/133 (54.89%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMKVLLQ 695 F + L E ++ G P+ VQ+ I I +G+D + AQ+G+GKTA F++ IL + + ALV++PTRELA Q+ ALG ++++C A GG ++ + L HVV TPG + +++ Sbjct: 27 FEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVVRESQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMIR 159
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: FAL1_ASPCL (ATP-dependent RNA helicase fal1 OS=Aspergillus clavatus GN=fal1 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14 Identity = 45/133 (33.83%), Postives = 72/133 (54.14%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMKVLLQ 695 F + L E ++ G P+ VQ+ I I +G+D + AQ+G+GKTA F++ IL + ALV++PTRELA Q+ ALG ++++C A GG ++ + L HVV TPG + +++ Sbjct: 27 FEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTAVRETQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMIR 159
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DRS1_ASPCL (ATP-dependent RNA helicase drs1 OS=Aspergillus clavatus GN=drs1 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14 Identity = 49/129 (37.98%), Postives = 64/129 (49.61%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY---GALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPG 674 F L+ ++ + PTP+Q IP L GKD++G A TGSGKTAAF +PIL RL P + ++ PTRELA Q L + + + GG L L RP V+IATPG Sbjct: 308 FQDFNLSRPILRGLASVNFTTPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQCYNVATKLATHTDVTFCQLVGGFSLREQENILKKRPDVIIATPG 436
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DDX6_PONAB (Probable ATP-dependent RNA helicase DDX6 OS=Pongo abelii GN=DDX6 PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14 Identity = 46/123 (37.40%), Postives = 70/123 (56.91%), Query Frame = 3 Query: 342 ELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLA----EQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMKVLLQE 698 E+G +P+P+Q IP L G+D+L A+ G+GK+ A+ +P+L RL A+VI PTRELA Q++ + K +G + A GG +L L + HVVIATPG + L+++ Sbjct: 113 EMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGA---KVMATTGGTNLRGDIMRLDDTVHVVIATPGRILDLIKK 232
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DDX6_CAVPO (Probable ATP-dependent RNA helicase DDX6 (Fragment) OS=Cavia porcellus GN=DDX6 PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14 Identity = 46/123 (37.40%), Postives = 70/123 (56.91%), Query Frame = 3 Query: 342 ELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLA----EQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMKVLLQE 698 E+G +P+P+Q IP L G+D+L A+ G+GK+ A+ +P+L RL A+VI PTRELA Q++ + K +G + A GG +L L + HVVIATPG + L+++ Sbjct: 102 EMGWEKPSPIQEESIPIALTGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGA---KVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKK 221
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP4_NEUCR (ATP-dependent RNA helicase dbp-4 OS=Neurospora crassa GN=dbp-4 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14 Identity = 50/132 (37.88%), Postives = 70/132 (53.03%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY----GALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680 F+ L L E + T VQ IP L+G+D+LG A+TGSGKT AF +P+L +L + G AL+I+PTRELA Q+ E + +G V GG L A+ L R ++++ TPG M Sbjct: 59 FSDLPLCEPTASGLRASHFEVLTDVQRAAIPLALKGQDILGAARTGSGKTLAFLVPVLEKLYRARWTEYDGLGALIISPTRELAVQIFEVLRKIGRNHSFSAGLVIGGKSLKEEAERL-GRMNILVCTPGRM 189
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP3_NEOFI (ATP-dependent RNA helicase dbp3 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp3 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14 Identity = 41/116 (35.34%), Postives = 67/116 (57.76%), Query Frame = 3 Query: 360 PTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAED------PYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMKVL 689 PTP+Q+ P + G+DV+G+A+TGSGKT AF LP + ++ + A++I+PTRELA Q+ +Q G+ + +R + GG+ + + +V+ATPG +K L Sbjct: 108 PTPIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCIKKILDSGKVKRKHARPAAVIISPTRELAMQIYDQLSKFGASVDIRVTCIYGGVK-KDEQREALKTAAIVVATPGRLKDL 222
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP3_ASPFU (ATP-dependent RNA helicase dbp3 OS=Aspergillus fumigatus GN=dbp3 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14 Identity = 41/116 (35.34%), Postives = 67/116 (57.76%), Query Frame = 3 Query: 360 PTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAED------PYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMKVL 689 PTP+Q+ P + G+DV+G+A+TGSGKT AF LP + ++ + A++I+PTRELA Q+ +Q G+ + +R + GG+ + + +V+ATPG +K L Sbjct: 108 PTPIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCIKKILDSGKVKRKHARPAAVIISPTRELAMQIYDQLSKFGASVDIRVTCIYGGVK-KDEQREALKTAAIVVATPGRLKDL 222
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP2_YEAST (ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae GN=DBP2 PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14 Identity = 45/138 (32.61%), Postives = 69/138 (50.00%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY-----GALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMKVLLQ 695 F G ++ + K G +PT +Q P L G+D++G+A TGSGKT ++ LP + + P G + LV+ PTRELA Q+ + G +R V GG+ + L +VIATPG + +L+ Sbjct: 115 FDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDMLE 252
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP2_YEAS7 (ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP2 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14 Identity = 45/138 (32.61%), Postives = 69/138 (50.00%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY-----GALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMMKVLLQ 695 F G ++ + K G +PT +Q P L G+D++G+A TGSGKT ++ LP + + P G + LV+ PTRELA Q+ + G +R V GG+ + L +VIATPG + +L+ Sbjct: 115 FDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDMLE 252 The following BLAST results are available for this feature:
BLAST of CF836003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836003 ID=CF836003; Name=CF836003; organism=Citrus sinensis; type=EST; length=712bpback to top |