CF836003

Overview
NameCF836003
Unique NameCF836003
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP8_PICST (ATP-dependent RNA helicase DBP8 OS=Pichia stipitis GN=DBP8 PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.164e-29
Identity = 61/128 (47.66%), Postives = 84/128 (65.62%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            F  LG++ W  +    + +  PT +Q+ CIP IL G D +G A+TGSGKT AFA P+L + +EDP+G   LV+TPTRELA Q+AEQF ALG+ ++++   V GG D +     L  +PH VIATPG +
Sbjct:    3 FEDLGVSRWLSEALAAMKIHTPTAIQSGCIPKILSGHDCIGGAKTGSGKTIAFAAPMLTQWSEDPFGIFGLVLTPTRELALQIAEQFAALGASMNIKISVVVGGEDFVKQTLELQKKPHFVIATPGRL 130          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP8_EMENI (ATP-dependent RNA helicase dbp8 OS=Emericella nidulans GN=dbp8 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.164e-29
Identity = 60/128 (46.88%), Postives = 88/128 (68.75%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            F  L +A W V +   + +R+PT +Q  CIP IL+G+D +G ++TGSGKT AF++PIL + AEDP+G  A+++TPTRELA Q+ EQ KA+ +   ++   + GG D+ + A  L  RPHVV+ATPG +
Sbjct:   97 FKALNVAPWLVGSLTTMAVRKPTAIQRACIPEILKGRDCIGGSRTGSGKTIAFSVPILQKWAEDPFGIFAVILTPTRELALQIFEQIKAISAPQSMKPVLITGGTDMRSQAIELAGRPHVVVATPGRL 224          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP8_ASPNC (ATP-dependent RNA helicase dbp8 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp8 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.164e-29
Identity = 61/128 (47.66%), Postives = 87/128 (67.97%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            FA L +A W + +   + +R+PT +Q  CIP IL G+D +G ++TGSGKT AF++P+L + AEDP+G   LV+TPTRELA Q+ EQ KA+ +   ++   + GG D+   A +L  RPHVVIATPG +
Sbjct:   94 FASLNVAPWLIGSLTTMAVRKPTAIQKACIPEILNGRDCIGGSRTGSGKTIAFSVPMLQKWAEDPFGIFGLVLTPTRELALQIYEQIKAISAPQSMKPLLITGGTDMRPQAVALAQRPHVVIATPGRL 221          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP8_ASPCL (ATP-dependent RNA helicase dbp8 OS=Aspergillus clavatus GN=dbp8 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.164e-29
Identity = 61/128 (47.66%), Postives = 87/128 (67.97%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            F+ L +A W V +   L +R+PT +Q  CIP IL GKD +G ++TGSGKT AF++P+L + AEDP G   L++TPTRELA Q+ EQ KA+ +   ++   + GG D+ + A +L  RPHVV+ATPG +
Sbjct:   95 FSALNVAPWLVGSLTTLAVRKPTAIQKACIPEILNGKDCIGGSRTGSGKTIAFSVPMLQKWAEDPLGIFGLILTPTRELALQIFEQIKAISAPQSMKPVLITGGTDMRSQALALAGRPHVVVATPGRL 222          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP8_NEOFI (ATP-dependent RNA helicase dbp8 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp8 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.133e-29
Identity = 61/128 (47.66%), Postives = 88/128 (68.75%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            FA L +A W V +   + +R+PT +Q  CIP IL+G+D +G ++TGSGKT AF++P+L + AEDP+G   +V+TPTRELA Q+ EQ KA+ +   ++   + GG D+   A +L  RPHVVIATPG +
Sbjct:   98 FAALNVAPWLVGSLTTMAVRKPTAIQKACIPEILKGRDCIGGSRTGSGKTIAFSVPMLQKWAEDPFGIFGVVLTPTRELALQIFEQIKAISAPQSMKPVLITGGTDMRPQAIALAGRPHVVIATPGRL 225          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP8_ASPFU (ATP-dependent RNA helicase dbp8 OS=Aspergillus fumigatus GN=dbp8 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.133e-29
Identity = 61/128 (47.66%), Postives = 88/128 (68.75%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            FA L +A W V +   + +R+PT +Q  CIP IL+G+D +G ++TGSGKT AF++P+L + AEDP+G   +V+TPTRELA Q+ EQ KA+ +   ++   + GG D+   A +L  RPHVVIATPG +
Sbjct:   98 FAALNVAPWLVGSLTTMAVRKPTAIQKACIPEILKGRDCIGGSRTGSGKTIAFSVPMLQKWAEDPFGIFGVVLTPTRELALQIFEQIKAISAPQSMKPVLITGGTDMRPQAIALAGRPHVVIATPGRL 225          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DDX47_DICDI (Probable ATP-dependent RNA helicase ddx47 OS=Dictyostelium discoideum GN=ddx47 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.050e-29
Identity = 57/126 (45.24%), Postives = 85/126 (67.46%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPG 674
            F  LG+    +  C +LG  +P  +Q   IP  L+G+D++GLAQTGSGKTAAF +P+L +L E P G   L + PTRELAYQ+A+QF A+GS + ++   + GG+D ++ + +L  +PHVV+ +PG
Sbjct:  121 FESLGVHPQIIDACNKLGFNKPKEIQRESIPWALKGRDIIGLAQTGSGKTAAFVIPVLQKLLEAPQGLFCLALAPTRELAYQIADQFNAIGSTIGVKTCVLVGGIDSMSQSLALAKKPHVVVGSPG 246          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP8_ASPOR (ATP-dependent RNA helicase dbp8 OS=Aspergillus oryzae GN=dbp8 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.202e-28
Identity = 60/125 (48.00%), Postives = 88/125 (70.40%), Query Frame = 3
Query:  306 LGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            L ++ W V +   + +R+PT +Q  CIP IL+G+D +G ++TGSGKT AFA+PIL + A+DP+G  A+V+TPTRELA Q+ EQ KA+ +   ++   + GG D+ + A +L  RPHVVIATPG +
Sbjct:   18 LNVSPWLVGSLTTMAVRKPTAIQKACIPEILKGRDCIGGSRTGSGKTIAFAVPILQKWAQDPFGIFAVVLTPTRELALQIYEQIKAISAPQSMKPLLITGGTDMRSQALALSQRPHVVIATPGRL 142          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP8_PHANO (ATP-dependent RNA helicase DBP8 OS=Phaeosphaeria nodorum GN=DBP8 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.499e-28
Identity = 62/128 (48.44%), Postives = 87/128 (67.97%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            FA + +A W V +   + ++RPT +Q  CIP IL+G+D +G ++TG+GKT AF++PIL + AEDP G   L+ITPTRELA Q+ EQ KA+ +   ++   V GG D    A +L +RPHVVIATPG +
Sbjct:   79 FASIDVAPWLVASLASMEIKRPTGIQKACIPEILKGRDCIGGSRTGTGKTVAFSVPILQKWAEDPSGIFGLIITPTRELAIQIYEQVKAISAPQSMKPILVTGGSDQREQAIALASRPHVVIATPGRL 206          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RRP3_LODEL (ATP-dependent rRNA helicase RRP3 OS=Lodderomyces elongisporus GN=RRP3 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.968e-28
Identity = 64/130 (49.23%), Postives = 87/130 (66.92%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRL--AEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            F    L    +++ + L   +PTP+Q   IP  L+GKD++G+A+TGSGKTAAFA+PIL  L  A  PY   ALV+ PTRELA+Q+ E F ALGS + LR   + GGM ++  A+ LM +PHV+IATPG +
Sbjct:  100 FTEFDLVPELLESIQSLKYTQPTPIQAAAIPHALQGKDIVGIAETGSGKTAAFAIPILQTLYTAAQPY--YALVLAPTRELAFQIKETFDALGSSMGLRSVCIIGGMSMMEQARDLMRKPHVIIATPGRL 227          
The following BLAST results are available for this feature:
BLAST of CF836003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP8_PICST3.164e-2947.66ATP-dependent RNA helicase DBP8 OS=Pichia stipitis... [more]
DBP8_EMENI3.164e-2946.88ATP-dependent RNA helicase dbp8 OS=Emericella nidu... [more]
DBP8_ASPNC3.164e-2947.66ATP-dependent RNA helicase dbp8 OS=Aspergillus nig... [more]
DBP8_ASPCL3.164e-2947.66ATP-dependent RNA helicase dbp8 OS=Aspergillus cla... [more]
DBP8_NEOFI4.133e-2947.66ATP-dependent RNA helicase dbp8 OS=Neosartorya fis... [more]
DBP8_ASPFU4.133e-2947.66ATP-dependent RNA helicase dbp8 OS=Aspergillus fum... [more]
DDX47_DICDI7.050e-2945.24Probable ATP-dependent RNA helicase ddx47 OS=Dicty... [more]
DBP8_ASPOR1.202e-2848.00ATP-dependent RNA helicase dbp8 OS=Aspergillus ory... [more]
DBP8_PHANO3.499e-2848.44ATP-dependent RNA helicase DBP8 OS=Phaeosphaeria n... [more]
RRP3_LODEL5.968e-2849.23ATP-dependent rRNA helicase RRP3 OS=Lodderomyces e... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836003 ID=CF836003; Name=CF836003; organism=Citrus sinensis; type=EST; length=712bp
GATGACTGCTCCCTTAAACACCCGAAAATCGAATCCTTGGCCTTCTCCAG
CCCTTAATACCTATATTCATCACCCTAAATGGAAAATTGTTGATTTATAC
TGACTGAGTAAACATGGACGAACACATCCACCTCGACGGGAACTTCCCTC
TCTTCGCCAAACCCAAATCTAAAACCAGAATCAAACCGGAACCGCAACCT
GAACCTGAACCGGAATCCAAAAACGCTAAAACCGCTCGACTCGAGAAATT
CACAACTCCCGATCCTAACTCTACCACCACCGACTCCACCGTCACTTTCG
CCGGCCTCGGCCTCGCCGAATGGGCGGTTCAGACATGCAAGGAGCTTGGC
ATGCGGCGGCCGACACCGGTCCAAACCCACTGCATACCCTAAATTCTCGA
GGGCAAGGACGTGCTGGGGCTGGCGCAGACCGGTAGCGGCAAAACCGCAG
CGTTCGCACTTCCGATACTCCACCGTTTGGCAGAGGACCCGTATGGGGCA
TTGGCACTGGTTATAACGCCGACAAGGGAGCTGGCGTACCAGTTGGCGGA
ACAGTTTAAGGCTCTGGGTTCGGGCTTGCATTTGAGGTGTGAGGCTGTGG
CTGGAGGAATGGATTTGTTGACCCCAGCTAAGAGCTTAATGAATAGGCCG
CATGTCGTTATTGCTACCCCTGGAATGATGAAGGTTTTGCTCCAAGAGGA
CCCTGATATCCC
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