CF836003

Overview
NameCF836003
Unique NameCF836003
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP8_LODEL (ATP-dependent RNA helicase DBP8 OS=Lodderomyces elongisporus GN=DBP8 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.794e-28
Identity = 59/128 (46.09%), Postives = 88/128 (68.75%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            F  LG+A+W  ++ + + +  PT +Q+ CIP IL+G+D +G A+TGSGKT AFA  +L + ++DP+G   L++TPTRELA Q+AEQF ALG+ ++++   V GG D +     L  +PH VIATPG +
Sbjct:    5 FKELGVAKWLSESLEAMKIHSPTSIQSACIPEILKGRDCIGGAKTGSGKTIAFAALMLTQWSQDPFGIFGLILTPTRELALQIAEQFAALGALMNIKVCVVVGGEDFVKQTLELQKKPHFVIATPGRL 132          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP8_MAGGR (ATP-dependent RNA helicase DBP8 OS=Magnaporthe grisea GN=DBP8 PE=3 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.962e-27
Identity = 61/128 (47.66%), Postives = 86/128 (67.19%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            F  LG+  W VQ+   L ++RPT +Q  CI  IL+G+D +G ++TGSGKT AFA+PIL + A+DP    A+V+T TR+LA Q+ EQFKA+ S   L+   + GG D+ + A +L  RP +VIATPG +
Sbjct:  138 FESLGVEPWLVQSLANLAVKRPTGIQKGCIGEILKGRDCIGGSRTGSGKTIAFAVPILQKYAQDPSAIFAVVLTATRQLALQIYEQFKAVSSPHVLKAALIIGGSDMRSQAIALAQRPSIVIATPGRL 265          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP8_NEUCR (ATP-dependent RNA helicase dbp-8 OS=Neurospora crassa GN=dbp-8 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.244e-25
Identity = 58/128 (45.31%), Postives = 81/128 (63.28%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            F  L +  W VQ+   + ++RPT +Q  CIP IL+G+D +G ++TGSGKT AFA+PIL + A +P     +++TPTRELA Q+ EQ  AL     L+   + GG D+   A  L  RPH+VIATPG +
Sbjct:  197 FDALNVRPWLVQSLANMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPILQQWAANPSAIFGVILTPTRELALQIMEQVIALSQPHVLKAVLITGGADMRKQAIDLAKRPHLVIATPGRL 324          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP10_YARLI (ATP-dependent RNA helicase DBP10 OS=Yarrowia lipolytica GN=DBP10 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.797e-24
Identity = 58/128 (45.31%), Postives = 83/128 (64.84%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLA--EDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPG 674
            FAGLGL++  ++     G ++PTP+Q   IP +LEGKDV+G+A+TGSGKTAAF LP+L +L       GA A++++P+RELA Q  +  K   +G  LR   + GG  L    K +M+ P ++IATPG
Sbjct:  104 FAGLGLSQLVLKNIARKGFKQPTPIQRKTIPLVLEGKDVVGMARTGSGKTAAFVLPMLEKLKVHSAKVGARAVILSPSRELALQTLKVVKDFSAGTDLRLAMLVGGDSLEEQFKMMMSNPDIIIATPG 231          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: Y956_STAHJ (Probable DEAD-box ATP-dependent RNA helicase SH0956 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH0956 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.918e-24
Identity = 54/126 (42.86%), Postives = 80/126 (63.49%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPG 674
            F  LG+++  V+T + +G + PTP+Q   IP  LEGKD+LG AQTG+GKT AF +P++ ++     G  AL++ PTRELA Q+AEQ +    G +++   V GGM +    K+L   P +V+ TPG
Sbjct:    4 FKELGISDKTVETLEAMGFKEPTPIQKDSIPYTLEGKDILGQAQTGTGKTGAFGIPLIEKVVGQS-GVQALILAPTRELAMQVAEQLREFSRGQNVQVVTVFGGMPIDRQIKALKRGPQIVVGTPG 128          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: Y802_STAS1 (Probable DEAD-box ATP-dependent RNA helicase SSP0802 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP0802 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.918e-24
Identity = 55/126 (43.65%), Postives = 79/126 (62.70%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPG 674
            F  LG+++   +T + +G    TP+Q   IP  LEGKDVLG AQTG+GKT AF +P++ ++A D  G  +L++ PTRELA Q+AE  KA   G +++   V GGM +    K+L   P +V+ TPG
Sbjct:    4 FKELGISDKMAETLQSMGFNEATPIQKESIPLALEGKDVLGQAQTGTGKTGAFGIPLIEKVA-DQEGVQSLILAPTRELAMQVAESLKAFAKGQNIQVVTVFGGMPIDRQIKALKKGPQIVVGTPG 128          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP10_CANAL (ATP-dependent RNA helicase DBP10 OS=Candida albicans GN=DBP10 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.595e-23
Identity = 56/139 (40.29%), Postives = 87/139 (62.59%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRL-AEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGM---MKVLLQED 701
            FA  GL ++ +    + G ++PTP+Q   IP I+EG+DV+G+A+TGSGKTAAF LP++ RL +  P G  A++++P+RELA Q  +Q K    G +L+   + GG  L      +M +P +++ TPG    +KV +Q D
Sbjct:  101 FASFGLTKFILANIAKKGYKQPTPIQRKTIPLIMEGRDVVGMARTGSGKTAAFVLPLIERLKSRQPGGVRAVILSPSRELALQTYKQVKEFSHGTNLQSIVLIGGDSLEEDFSKMMTKPDIIVCTPGRFLHLKVEMQYD 239          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DEAD_BUCBP (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=deaD PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.389e-23
Identity = 58/131 (44.27%), Postives = 80/131 (61.07%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGS---GLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            F+  GL    +    ++G  +P+P+Q  CIP +++GKDVLG+AQTGSGKTAAFALP+LH +  D      LV+TPTRELA Q+AE F        G+H+   A+ GG       KSL   P +++ TPG +
Sbjct:    8 FSSFGLNSCIITALNDIGYVQPSPIQAACIPYLIKGKDVLGMAQTGSGKTAAFALPLLHNIKLDVRVPQILVLTPTRELAVQVAEAFSNFSKKLIGVHVL--ALYGGQRYDLQLKSLRKGPQIIVGTPGRL 136          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DEAD_BUCAI (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=deaD PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.389e-23
Identity = 58/131 (44.27%), Postives = 82/131 (62.60%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGS---GLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            F+ LGL  + +Q+  E+G  +P+P+Q  CIP +LEG+DVLG+AQTGSGKTAAF+LP+LH L  +      LV+ PTRELA Q+AE F        G+H+    + GG       ++L   P +V+ TPG +
Sbjct:    8 FSFLGLNPFIIQSLNEMGYVKPSPIQASCIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNLNINLKAPQILVLAPTRELAVQVAEAFSDFSKYMIGIHVL--PLYGGQRYELQLRALRQGPQIVVGTPGRL 136          
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: Y1688_STAEQ (Probable DEAD-box ATP-dependent RNA helicase SERP1688 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP1688 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.426e-23
Identity = 53/126 (42.06%), Postives = 78/126 (61.90%), Query Frame = 3
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPG 674
            F  LG+++  VQT + +G + PTP+Q   IP  LEG D+LG AQTG+GKT AF +P++ ++     G  +L++ PTRELA Q+AEQ +    G  ++   V GGM +    K+L   P +V+ TPG
Sbjct:    4 FKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIEKVV-GQQGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKALKRGPQIVVGTPG 128          
The following BLAST results are available for this feature:
BLAST of CF836003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP8_LODEL7.794e-2846.09ATP-dependent RNA helicase DBP8 OS=Lodderomyces el... [more]
DBP8_MAGGR2.962e-2747.66ATP-dependent RNA helicase DBP8 OS=Magnaporthe gri... [more]
DBP8_NEUCR1.244e-2545.31ATP-dependent RNA helicase dbp-8 OS=Neurospora cra... [more]
DBP10_YARLI1.797e-2445.31ATP-dependent RNA helicase DBP10 OS=Yarrowia lipol... [more]
Y956_STAHJ8.918e-2442.86Probable DEAD-box ATP-dependent RNA helicase SH095... [more]
Y802_STAS18.918e-2443.65Probable DEAD-box ATP-dependent RNA helicase SSP08... [more]
DBP10_CANAL2.595e-2340.29ATP-dependent RNA helicase DBP10 OS=Candida albica... [more]
DEAD_BUCBP3.389e-2344.27Cold-shock DEAD box protein A homolog OS=Buchnera ... [more]
DEAD_BUCAI3.389e-2344.27Cold-shock DEAD box protein A homolog OS=Buchnera ... [more]
Y1688_STAEQ4.426e-2342.06Probable DEAD-box ATP-dependent RNA helicase SERP1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836003 ID=CF836003; Name=CF836003; organism=Citrus sinensis; type=EST; length=712bp
GATGACTGCTCCCTTAAACACCCGAAAATCGAATCCTTGGCCTTCTCCAG
CCCTTAATACCTATATTCATCACCCTAAATGGAAAATTGTTGATTTATAC
TGACTGAGTAAACATGGACGAACACATCCACCTCGACGGGAACTTCCCTC
TCTTCGCCAAACCCAAATCTAAAACCAGAATCAAACCGGAACCGCAACCT
GAACCTGAACCGGAATCCAAAAACGCTAAAACCGCTCGACTCGAGAAATT
CACAACTCCCGATCCTAACTCTACCACCACCGACTCCACCGTCACTTTCG
CCGGCCTCGGCCTCGCCGAATGGGCGGTTCAGACATGCAAGGAGCTTGGC
ATGCGGCGGCCGACACCGGTCCAAACCCACTGCATACCCTAAATTCTCGA
GGGCAAGGACGTGCTGGGGCTGGCGCAGACCGGTAGCGGCAAAACCGCAG
CGTTCGCACTTCCGATACTCCACCGTTTGGCAGAGGACCCGTATGGGGCA
TTGGCACTGGTTATAACGCCGACAAGGGAGCTGGCGTACCAGTTGGCGGA
ACAGTTTAAGGCTCTGGGTTCGGGCTTGCATTTGAGGTGTGAGGCTGTGG
CTGGAGGAATGGATTTGTTGACCCCAGCTAAGAGCTTAATGAATAGGCCG
CATGTCGTTATTGCTACCCCTGGAATGATGAAGGTTTTGCTCCAAGAGGA
CCCTGATATCCC
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