CF836003
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP8_LODEL (ATP-dependent RNA helicase DBP8 OS=Lodderomyces elongisporus GN=DBP8 PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 7.794e-28 Identity = 59/128 (46.09%), Postives = 88/128 (68.75%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680 F LG+A+W ++ + + + PT +Q+ CIP IL+G+D +G A+TGSGKT AFA +L + ++DP+G L++TPTRELA Q+AEQF ALG+ ++++ V GG D + L +PH VIATPG + Sbjct: 5 FKELGVAKWLSESLEAMKIHSPTSIQSACIPEILKGRDCIGGAKTGSGKTIAFAALMLTQWSQDPFGIFGLILTPTRELALQIAEQFAALGALMNIKVCVVVGGEDFVKQTLELQKKPHFVIATPGRL 132
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP8_MAGGR (ATP-dependent RNA helicase DBP8 OS=Magnaporthe grisea GN=DBP8 PE=3 SV=2) HSP 1 Score: 122.094 bits (305), Expect = 2.962e-27 Identity = 61/128 (47.66%), Postives = 86/128 (67.19%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680 F LG+ W VQ+ L ++RPT +Q CI IL+G+D +G ++TGSGKT AFA+PIL + A+DP A+V+T TR+LA Q+ EQFKA+ S L+ + GG D+ + A +L RP +VIATPG + Sbjct: 138 FESLGVEPWLVQSLANLAVKRPTGIQKGCIGEILKGRDCIGGSRTGSGKTIAFAVPILQKYAQDPSAIFAVVLTATRQLALQIYEQFKAVSSPHVLKAALIIGGSDMRSQAIALAQRPSIVIATPGRL 265
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP8_NEUCR (ATP-dependent RNA helicase dbp-8 OS=Neurospora crassa GN=dbp-8 PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.244e-25 Identity = 58/128 (45.31%), Postives = 81/128 (63.28%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680 F L + W VQ+ + ++RPT +Q CIP IL+G+D +G ++TGSGKT AFA+PIL + A +P +++TPTRELA Q+ EQ AL L+ + GG D+ A L RPH+VIATPG + Sbjct: 197 FDALNVRPWLVQSLANMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPILQQWAANPSAIFGVILTPTRELALQIMEQVIALSQPHVLKAVLITGGADMRKQAIDLAKRPHLVIATPGRL 324
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP10_YARLI (ATP-dependent RNA helicase DBP10 OS=Yarrowia lipolytica GN=DBP10 PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.797e-24 Identity = 58/128 (45.31%), Postives = 83/128 (64.84%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLA--EDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPG 674 FAGLGL++ ++ G ++PTP+Q IP +LEGKDV+G+A+TGSGKTAAF LP+L +L GA A++++P+RELA Q + K +G LR + GG L K +M+ P ++IATPG Sbjct: 104 FAGLGLSQLVLKNIARKGFKQPTPIQRKTIPLVLEGKDVVGMARTGSGKTAAFVLPMLEKLKVHSAKVGARAVILSPSRELALQTLKVVKDFSAGTDLRLAMLVGGDSLEEQFKMMMSNPDIIIATPG 231
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: Y956_STAHJ (Probable DEAD-box ATP-dependent RNA helicase SH0956 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH0956 PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 8.918e-24 Identity = 54/126 (42.86%), Postives = 80/126 (63.49%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPG 674 F LG+++ V+T + +G + PTP+Q IP LEGKD+LG AQTG+GKT AF +P++ ++ G AL++ PTRELA Q+AEQ + G +++ V GGM + K+L P +V+ TPG Sbjct: 4 FKELGISDKTVETLEAMGFKEPTPIQKDSIPYTLEGKDILGQAQTGTGKTGAFGIPLIEKVVGQS-GVQALILAPTRELAMQVAEQLREFSRGQNVQVVTVFGGMPIDRQIKALKRGPQIVVGTPG 128
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: Y802_STAS1 (Probable DEAD-box ATP-dependent RNA helicase SSP0802 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP0802 PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 8.918e-24 Identity = 55/126 (43.65%), Postives = 79/126 (62.70%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPG 674 F LG+++ +T + +G TP+Q IP LEGKDVLG AQTG+GKT AF +P++ ++A D G +L++ PTRELA Q+AE KA G +++ V GGM + K+L P +V+ TPG Sbjct: 4 FKELGISDKMAETLQSMGFNEATPIQKESIPLALEGKDVLGQAQTGTGKTGAFGIPLIEKVA-DQEGVQSLILAPTRELAMQVAESLKAFAKGQNIQVVTVFGGMPIDRQIKALKKGPQIVVGTPG 128
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP10_CANAL (ATP-dependent RNA helicase DBP10 OS=Candida albicans GN=DBP10 PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.595e-23 Identity = 56/139 (40.29%), Postives = 87/139 (62.59%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRL-AEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGM---MKVLLQED 701 FA GL ++ + + G ++PTP+Q IP I+EG+DV+G+A+TGSGKTAAF LP++ RL + P G A++++P+RELA Q +Q K G +L+ + GG L +M +P +++ TPG +KV +Q D Sbjct: 101 FASFGLTKFILANIAKKGYKQPTPIQRKTIPLIMEGRDVVGMARTGSGKTAAFVLPLIERLKSRQPGGVRAVILSPSRELALQTYKQVKEFSHGTNLQSIVLIGGDSLEEDFSKMMTKPDIIVCTPGRFLHLKVEMQYD 239
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DEAD_BUCBP (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=deaD PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.389e-23 Identity = 58/131 (44.27%), Postives = 80/131 (61.07%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGS---GLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680 F+ GL + ++G +P+P+Q CIP +++GKDVLG+AQTGSGKTAAFALP+LH + D LV+TPTRELA Q+AE F G+H+ A+ GG KSL P +++ TPG + Sbjct: 8 FSSFGLNSCIITALNDIGYVQPSPIQAACIPYLIKGKDVLGMAQTGSGKTAAFALPLLHNIKLDVRVPQILVLTPTRELAVQVAEAFSNFSKKLIGVHVL--ALYGGQRYDLQLKSLRKGPQIIVGTPGRL 136
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DEAD_BUCAI (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=deaD PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.389e-23 Identity = 58/131 (44.27%), Postives = 82/131 (62.60%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGS---GLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680 F+ LGL + +Q+ E+G +P+P+Q CIP +LEG+DVLG+AQTGSGKTAAF+LP+LH L + LV+ PTRELA Q+AE F G+H+ + GG ++L P +V+ TPG + Sbjct: 8 FSFLGLNPFIIQSLNEMGYVKPSPIQASCIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNLNINLKAPQILVLAPTRELAVQVAEAFSDFSKYMIGIHVL--PLYGGQRYELQLRALRQGPQIVVGTPGRL 136
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: Y1688_STAEQ (Probable DEAD-box ATP-dependent RNA helicase SERP1688 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP1688 PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 4.426e-23 Identity = 53/126 (42.06%), Postives = 78/126 (61.90%), Query Frame = 3 Query: 297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPG 674 F LG+++ VQT + +G + PTP+Q IP LEG D+LG AQTG+GKT AF +P++ ++ G +L++ PTRELA Q+AEQ + G ++ V GGM + K+L P +V+ TPG Sbjct: 4 FKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIEKVV-GQQGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKALKRGPQIVVGTPG 128 The following BLAST results are available for this feature:
BLAST of CF836003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836003 ID=CF836003; Name=CF836003; organism=Citrus sinensis; type=EST; length=712bpback to top |