CF836003

Overview
NameCF836003
Unique NameCF836003
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: Y1679_STAES (Probable DEAD-box ATP-dependent RNA helicase SE_1679 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_1679 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.860e-23
Identity = 53/126 (42.06%), Postives = 77/126 (61.11%), Query Frame = 3 
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPG 674
            F  LG+++  VQT + +G + PTP+Q   IP  LEG D+LG AQTG+GKT AF +P++ ++     G  +L++ PTRELA Q+AEQ +    G  ++   V GGM +    K L   P +V+ TPG
Sbjct:    4 FKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIEKVV-GQQGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKVLKRGPQIVVGTPG 128
[Close]
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP10_CANGA (ATP-dependent RNA helicase DBP10 OS=Candida glabrata GN=DBP10 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.288e-22
Identity = 55/128 (42.97%), Postives = 78/128 (60.94%), Query Frame = 3 
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLA--EDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPG 674
            FA  GL++  +    + G R+PTP+Q   IP IL+ +D++G+A+TGSGKTAAF LP++ +L       GA A++++P+RELA Q    FK    G HLR   + GG  L      +M  P V+IATPG
Sbjct:  117 FASFGLSKLILVNISKRGFRQPTPIQRKTIPLILQNRDIVGMARTGSGKTAAFVLPMIEKLKTHSSKIGARAIILSPSRELAMQTHSVFKEFSRGTHLRSVLLTGGDSLEDQFGMMMTNPDVIIATPG 244
[Close]
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: CSHA_BACHK (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus thuringiensis subsp. konkukian GN=cshA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.288e-22
Identity = 50/126 (39.68%), Postives = 76/126 (60.32%), Query Frame = 3 
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPG 674
            F  LGL++  +Q+ + +G    TP+Q   IP  L+GKD++G AQTG+GKTAAF LP+L ++         +VI PTRELA Q+ E+   +G    +R   + GG D+    ++L   PH+++ TPG
Sbjct:    4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPG 129
[Close]
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: CSHA_BACCZ (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ZK / E33L) GN=cshA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.288e-22
Identity = 50/126 (39.68%), Postives = 76/126 (60.32%), Query Frame = 3 
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPG 674
            F  LGL++  +Q+ + +G    TP+Q   IP  L+GKD++G AQTG+GKTAAF LP+L ++         +VI PTRELA Q+ E+   +G    +R   + GG D+    ++L   PH+++ TPG
Sbjct:    4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPG 129
[Close]
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: CSHA_BACCR (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=cshA PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.288e-22
Identity = 50/126 (39.68%), Postives = 76/126 (60.32%), Query Frame = 3 
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPG 674
            F  LGL++  +Q+ + +G    TP+Q   IP  L+GKD++G AQTG+GKTAAF LP+L ++         +VI PTRELA Q+ E+   +G    +R   + GG D+    ++L   PH+++ TPG
Sbjct:    4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPG 129
[Close]
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: CSHA_BACC1 (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ATCC 10987) GN=cshA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.288e-22
Identity = 50/126 (39.68%), Postives = 76/126 (60.32%), Query Frame = 3 
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPG 674
            F  LGL++  +Q+ + +G    TP+Q   IP  L+GKD++G AQTG+GKTAAF LP+L ++         +VI PTRELA Q+ E+   +G    +R   + GG D+    ++L   PH+++ TPG
Sbjct:    4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPG 129
[Close]
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: CSHA_BACAN (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus anthracis GN=cshA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.288e-22
Identity = 50/126 (39.68%), Postives = 76/126 (60.32%), Query Frame = 3 
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPG 674
            F  LGL++  +Q+ + +G    TP+Q   IP  L+GKD++G AQTG+GKTAAF LP+L ++         +VI PTRELA Q+ E+   +G    +R   + GG D+    ++L   PH+++ TPG
Sbjct:    4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPG 129
[Close]
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: CSHA_BACAH (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus thuringiensis (strain Al Hakam) GN=cshA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.288e-22
Identity = 50/126 (39.68%), Postives = 76/126 (60.32%), Query Frame = 3 
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPG 674
            F  LGL++  +Q+ + +G    TP+Q   IP  L+GKD++G AQTG+GKTAAF LP+L ++         +VI PTRELA Q+ E+   +G    +R   + GG D+    ++L   PH+++ TPG
Sbjct:    4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPG 129
[Close]
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DEAD_BUCAP (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Schizaphis graminum GN=deaD PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.869e-22
Identity = 56/131 (42.75%), Postives = 82/131 (62.60%), Query Frame = 3 
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGS---GLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            F+ LGL  + +++  ++G  +P+P+Q  CIP +LEG+DVLG+AQTGSGKTAAF+LP+LH L  +      LV+ PTRELA Q+AE F        G+H+    + GG       ++L   P +V+ TPG +
Sbjct:    8 FSFLGLNPFIIKSLSKMGYVKPSPIQAACIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNLNINLKAPQILVLAPTRELAVQVAEAFSDFSKYIMGIHVL--PLYGGQRYEVQLRALRQGPQIVVGTPGRL 136
[Close]
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: DBP10_ASHGO (ATP-dependent RNA helicase DBP10 OS=Ashbya gossypii GN=DBP10 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.893e-22
Identity = 54/128 (42.19%), Postives = 80/128 (62.50%), Query Frame = 3 
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLA--EDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPG 674
            FA  GL+++ +      G R+PTP+Q   IP IL+ +D++G+A+TGSGKTAAF LP++ +L       GA A++++P+RELA Q  + FK    G +LR   + GG  L      +M+ P V+IATPG
Sbjct:  122 FASFGLSKFILGNISRKGFRQPTPIQRKTIPLILQQRDIVGMARTGSGKTAAFVLPLIEKLKMHSAKIGARAMILSPSRELAMQTHKVFKEFAKGSNLRSVLLTGGDGLEDQFSMMMSNPDVIIATPG 249
The following BLAST results are available for this feature:
BLAST of CF836003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
Y1679_STAES9.860e-2342.06Probable DEAD-box ATP-dependent RNA helicase SE_16... [more]
DBP10_CANGA1.288e-2242.97ATP-dependent RNA helicase DBP10 OS=Candida glabra... [more]
CSHA_BACHK1.288e-2239.68DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACCZ1.288e-2239.68DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACCR1.288e-2239.68DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACC11.288e-2239.68DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACAN1.288e-2239.68DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACAH1.288e-2239.68DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
DEAD_BUCAP2.869e-2242.75Cold-shock DEAD box protein A homolog OS=Buchnera ... [more]
DBP10_ASHGO4.893e-2242.19ATP-dependent RNA helicase DBP10 OS=Ashbya gossypi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836003 ID=CF836003; Name=CF836003; organism=Citrus sinensis; type=EST; length=712bp
GATGACTGCTCCCTTAAACACCCGAAAATCGAATCCTTGGCCTTCTCCAG
CCCTTAATACCTATATTCATCACCCTAAATGGAAAATTGTTGATTTATAC
TGACTGAGTAAACATGGACGAACACATCCACCTCGACGGGAACTTCCCTC
TCTTCGCCAAACCCAAATCTAAAACCAGAATCAAACCGGAACCGCAACCT
GAACCTGAACCGGAATCCAAAAACGCTAAAACCGCTCGACTCGAGAAATT
CACAACTCCCGATCCTAACTCTACCACCACCGACTCCACCGTCACTTTCG
CCGGCCTCGGCCTCGCCGAATGGGCGGTTCAGACATGCAAGGAGCTTGGC
ATGCGGCGGCCGACACCGGTCCAAACCCACTGCATACCCTAAATTCTCGA
GGGCAAGGACGTGCTGGGGCTGGCGCAGACCGGTAGCGGCAAAACCGCAG
CGTTCGCACTTCCGATACTCCACCGTTTGGCAGAGGACCCGTATGGGGCA
TTGGCACTGGTTATAACGCCGACAAGGGAGCTGGCGTACCAGTTGGCGGA
ACAGTTTAAGGCTCTGGGTTCGGGCTTGCATTTGAGGTGTGAGGCTGTGG
CTGGAGGAATGGATTTGTTGACCCCAGCTAAGAGCTTAATGAATAGGCCG
CATGTCGTTATTGCTACCCCTGGAATGATGAAGGTTTTGCTCCAAGAGGA
CCCTGATATCCC
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