CF836003

Overview
NameCF836003
Unique NameCF836003
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RH28_ORYSJ (DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa subsp. japonica GN=Os12g0481100 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.391e-22
Identity = 55/129 (42.64%), Postives = 77/129 (59.69%), Query Frame = 3 
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALA---LVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPG 674
            F  L L+   ++ C+ LG ++PTP+Q  CIP  L G+D+ G A TGSGKTAAF+LP+L RL   P    A   L++TPTRELA Q+    + L     +RC  + GG+       +L + P +V+ATPG
Sbjct:  196 FLELNLSRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERLLFRPKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRSMPDIVVATPG 324
[Close]
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: Y2316_STAA8 (Probable DEAD-box ATP-dependent RNA helicase SAOUHSC_02316 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_02316 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.347e-22
Identity = 51/126 (40.48%), Postives = 78/126 (61.90%), Query Frame = 3 
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPG 674
            F  LG+++  VQ+ + +G + PTP+Q   IP  L+G D+LG AQTG+GKT AF +P++ ++     G  +L++ PTRELA Q+AEQ +    G  ++   V GGM +    K+L   P +V+ TPG
Sbjct:    4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVV-GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPG 128
[Close]
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: Y2168_STAAR (Probable DEAD-box ATP-dependent RNA helicase SAR2168 OS=Staphylococcus aureus (strain MRSA252) GN=SAR2168 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.347e-22
Identity = 51/126 (40.48%), Postives = 78/126 (61.90%), Query Frame = 3 
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPG 674
            F  LG+++  VQ+ + +G + PTP+Q   IP  L+G D+LG AQTG+GKT AF +P++ ++     G  +L++ PTRELA Q+AEQ +    G  ++   V GGM +    K+L   P +V+ TPG
Sbjct:    4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVV-GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPG 128
[Close]
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: Y2081_STAAM (Probable DEAD-box ATP-dependent RNA helicase SAV2081 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV2081 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.347e-22
Identity = 51/126 (40.48%), Postives = 78/126 (61.90%), Query Frame = 3 
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPG 674
            F  LG+++  VQ+ + +G + PTP+Q   IP  L+G D+LG AQTG+GKT AF +P++ ++     G  +L++ PTRELA Q+AEQ +    G  ++   V GGM +    K+L   P +V+ TPG
Sbjct:    4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVV-GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPG 128
[Close]
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: Y2072_STAAC (Probable DEAD-box ATP-dependent RNA helicase SACOL2072 OS=Staphylococcus aureus (strain COL) GN=SACOL2072 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.347e-22
Identity = 51/126 (40.48%), Postives = 78/126 (61.90%), Query Frame = 3 
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPG 674
            F  LG+++  VQ+ + +G + PTP+Q   IP  L+G D+LG AQTG+GKT AF +P++ ++     G  +L++ PTRELA Q+AEQ +    G  ++   V GGM +    K+L   P +V+ TPG
Sbjct:    4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVV-GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPG 128
[Close]
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: Y2037_STAA3 (Probable DEAD-box ATP-dependent RNA helicase SAUSA300_2037 OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_2037 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.347e-22
Identity = 51/126 (40.48%), Postives = 78/126 (61.90%), Query Frame = 3 
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPG 674
            F  LG+++  VQ+ + +G + PTP+Q   IP  L+G D+LG AQTG+GKT AF +P++ ++     G  +L++ PTRELA Q+AEQ +    G  ++   V GGM +    K+L   P +V+ TPG
Sbjct:    4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVV-GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPG 128
[Close]
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: Y2004_STAAW (Probable DEAD-box ATP-dependent RNA helicase MW2004 OS=Staphylococcus aureus (strain MW2) GN=MW2004 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.347e-22
Identity = 51/126 (40.48%), Postives = 78/126 (61.90%), Query Frame = 3 
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPG 674
            F  LG+++  VQ+ + +G + PTP+Q   IP  L+G D+LG AQTG+GKT AF +P++ ++     G  +L++ PTRELA Q+AEQ +    G  ++   V GGM +    K+L   P +V+ TPG
Sbjct:    4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVV-GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPG 128
[Close]
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: Y1985_STAAS (Probable DEAD-box ATP-dependent RNA helicase SAS1985 OS=Staphylococcus aureus (strain MSSA476) GN=SAS1985 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.347e-22
Identity = 51/126 (40.48%), Postives = 78/126 (61.90%), Query Frame = 3 
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPG 674
            F  LG+++  VQ+ + +G + PTP+Q   IP  L+G D+LG AQTG+GKT AF +P++ ++     G  +L++ PTRELA Q+AEQ +    G  ++   V GGM +    K+L   P +V+ TPG
Sbjct:    4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVV-GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPG 128
[Close]
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: Y1885_STAAN (Probable DEAD-box ATP-dependent RNA helicase SA1885 OS=Staphylococcus aureus (strain N315) GN=SA1885 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.347e-22
Identity = 51/126 (40.48%), Postives = 78/126 (61.90%), Query Frame = 3 
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPG 674
            F  LG+++  VQ+ + +G + PTP+Q   IP  L+G D+LG AQTG+GKT AF +P++ ++     G  +L++ PTRELA Q+AEQ +    G  ++   V GGM +    K+L   P +V+ TPG
Sbjct:    4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVV-GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPG 128
[Close]
BLAST of CF836003 vs. ExPASy Swiss-Prot
Match: RH28_ARATH (DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis thaliana GN=RH28 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.090e-21
Identity = 54/131 (41.22%), Postives = 76/131 (58.02%), Query Frame = 3 
Query:  297 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIP*ILEGKDVLGLAQTGSGKTAAFALPILHRLAEDP---YGALALVITPTRELAYQLAEQFKALGSGLHLRCEAVAGGMDLLTPAKSLMNRPHVVIATPGMM 680
            F  L L+   ++ C+ LG ++PTP+Q  CIP  L G+D+   A TGSGKTAAFALP L RL   P   +    L++TPTRELA Q+    + L     ++C  + GG+ +      L + P +V+ATPG M
Sbjct:  169 FMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRM 299
The following BLAST results are available for this feature:
BLAST of CF836003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH28_ORYSJ6.391e-2242.64DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sa... [more]
Y2316_STAA88.347e-2240.48Probable DEAD-box ATP-dependent RNA helicase SAOUH... [more]
Y2168_STAAR8.347e-2240.48Probable DEAD-box ATP-dependent RNA helicase SAR21... [more]
Y2081_STAAM8.347e-2240.48Probable DEAD-box ATP-dependent RNA helicase SAV20... [more]
Y2072_STAAC8.347e-2240.48Probable DEAD-box ATP-dependent RNA helicase SACOL... [more]
Y2037_STAA38.347e-2240.48Probable DEAD-box ATP-dependent RNA helicase SAUSA... [more]
Y2004_STAAW8.347e-2240.48Probable DEAD-box ATP-dependent RNA helicase MW200... [more]
Y1985_STAAS8.347e-2240.48Probable DEAD-box ATP-dependent RNA helicase SAS19... [more]
Y1885_STAAN8.347e-2240.48Probable DEAD-box ATP-dependent RNA helicase SA188... [more]
RH28_ARATH1.090e-2141.22DEAD-box ATP-dependent RNA helicase 28 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836003 ID=CF836003; Name=CF836003; organism=Citrus sinensis; type=EST; length=712bp
GATGACTGCTCCCTTAAACACCCGAAAATCGAATCCTTGGCCTTCTCCAG
CCCTTAATACCTATATTCATCACCCTAAATGGAAAATTGTTGATTTATAC
TGACTGAGTAAACATGGACGAACACATCCACCTCGACGGGAACTTCCCTC
TCTTCGCCAAACCCAAATCTAAAACCAGAATCAAACCGGAACCGCAACCT
GAACCTGAACCGGAATCCAAAAACGCTAAAACCGCTCGACTCGAGAAATT
CACAACTCCCGATCCTAACTCTACCACCACCGACTCCACCGTCACTTTCG
CCGGCCTCGGCCTCGCCGAATGGGCGGTTCAGACATGCAAGGAGCTTGGC
ATGCGGCGGCCGACACCGGTCCAAACCCACTGCATACCCTAAATTCTCGA
GGGCAAGGACGTGCTGGGGCTGGCGCAGACCGGTAGCGGCAAAACCGCAG
CGTTCGCACTTCCGATACTCCACCGTTTGGCAGAGGACCCGTATGGGGCA
TTGGCACTGGTTATAACGCCGACAAGGGAGCTGGCGTACCAGTTGGCGGA
ACAGTTTAAGGCTCTGGGTTCGGGCTTGCATTTGAGGTGTGAGGCTGTGG
CTGGAGGAATGGATTTGTTGACCCCAGCTAAGAGCTTAATGAATAGGCCG
CATGTCGTTATTGCTACCCCTGGAATGATGAAGGTTTTGCTCCAAGAGGA
CCCTGATATCCC
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