CF836004

Overview
NameCF836004
Unique NameCF836004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS22_KLULA (40S ribosomal protein S22 OS=Kluyveromyces lactis GN=RPS22 PE=3 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 4.108e-45
Identity = 83/115 (72.17%), Postives = 98/115 (85.22%), Query Frame = -3 
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            NAEK GKRQV+I PSSKVIIKFL  MQKHGYIGE EY+DDHR+GKIVV+LNGR+NKCGVISPRF+V + ++  WT  LLP+RQ+GY++LTT AGIM HEEA RK+V GK+ GF Y
Sbjct:   16 NAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFNVKIADVEKWTANLLPARQFGYVILTTSAGIMDHEEAHRKHVSGKILGFVY 130
[Close]
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS22_NEUCR (40S ribosomal protein S22 OS=Neurospora crassa GN=rps-22 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 7.006e-45
Identity = 85/118 (72.03%), Postives = 101/118 (85.59%), Query Frame = -3 
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            S+ NAEK GKRQV+I PSSKVIIKFL  MQKHGYIGE E VDDHR+GKIVV+LNGR+NKCGVISPR++V + E+  W  +LLP+RQ+GY++LTT AGIM HEEARRK+V GK+ GFFY
Sbjct:   13 SINNAEKAGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEEVDDHRSGKIVVQLNGRMNKCGVISPRYNVRLAELEKWVVKLLPARQFGYVILTTSAGIMDHEEARRKHVSGKIIGFFY 130
[Close]
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS15A_STRPU (40S ribosomal protein S15a OS=Strongylocentrotus purpuratus GN=RPS15A PE=2 SV=3)

HSP 1 Score: 179.489 bits (454), Expect = 7.006e-45
Identity = 84/118 (71.19%), Postives = 97/118 (82.20%), Query Frame = -3 
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            S+ NAEKR KRQV+I P SKV +KFL+ M KHGYIGE E VDDHR GKI+V LNGR+NKCGVISPRFDV + E+  WT  LLPSRQ+GY+VLTT  GIM HEEARRK+VGGK+ GFF+
Sbjct:   13 SICNAEKRCKRQVLIRPCSKVTVKFLMVMMKHGYIGEFEIVDDHRGGKIIVNLNGRLNKCGVISPRFDVPINEMEKWTSNLLPSRQFGYVVLTTSGGIMDHEEARRKHVGGKILGFFF 130
[Close]
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS15A_DROYA (40S ribosomal protein S15a OS=Drosophila yakuba GN=RpS15Aa PE=2 SV=3)

HSP 1 Score: 179.489 bits (454), Expect = 7.006e-45
Identity = 84/115 (73.04%), Postives = 96/115 (83.48%), Query Frame = -3 
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            NAEKRGKRQV++ P SKVIIKFL  M KHGYIGE E VDDHR+GKIVV L GR+NKCGVISPRFDV + +I  WT  LLPSRQ+GY+VLTT  GIM HEEARRK++GGK+ GFF+
Sbjct:   16 NAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEFEIVDDHRSGKIVVNLTGRLNKCGVISPRFDVPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 130
[Close]
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS15A_DROME (40S ribosomal protein S15Aa OS=Drosophila melanogaster GN=RpS15Aa PE=2 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 7.006e-45
Identity = 84/115 (73.04%), Postives = 96/115 (83.48%), Query Frame = -3 
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            NAEKRGKRQV++ P SKVIIKFL  M KHGYIGE E VDDHR+GKIVV L GR+NKCGVISPRFDV + +I  WT  LLPSRQ+GY+VLTT  GIM HEEARRK++GGK+ GFF+
Sbjct:   16 NAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEFEIVDDHRSGKIVVNLTGRLNKCGVISPRFDVPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 130
[Close]
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS15A_RAT (40S ribosomal protein S15a OS=Rattus norvegicus GN=Rps15a PE=1 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 1.195e-44
Identity = 84/118 (71.19%), Postives = 98/118 (83.05%), Query Frame = -3 
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            S+ NAEKRGKRQV+I P SKVI++FL  M KHGYIGE E +DDHRAGKIVV L GR+NKCGVISPRFDV +K++  W   LLPSRQ+G+IVLTT AGIM HEEARRK+ GGK+ GFF+
Sbjct:   13 SINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
[Close]
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS15A_MOUSE (40S ribosomal protein S15a OS=Mus musculus GN=Rps15a PE=2 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 1.195e-44
Identity = 84/118 (71.19%), Postives = 98/118 (83.05%), Query Frame = -3 
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            S+ NAEKRGKRQV+I P SKVI++FL  M KHGYIGE E +DDHRAGKIVV L GR+NKCGVISPRFDV +K++  W   LLPSRQ+G+IVLTT AGIM HEEARRK+ GGK+ GFF+
Sbjct:   13 SINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
[Close]
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS15A_HUMAN (40S ribosomal protein S15a OS=Homo sapiens GN=RPS15A PE=1 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 1.195e-44
Identity = 84/118 (71.19%), Postives = 98/118 (83.05%), Query Frame = -3 
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            S+ NAEKRGKRQV+I P SKVI++FL  M KHGYIGE E +DDHRAGKIVV L GR+NKCGVISPRFDV +K++  W   LLPSRQ+G+IVLTT AGIM HEEARRK+ GGK+ GFF+
Sbjct:   13 SINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
[Close]
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS15A_BOVIN (40S ribosomal protein S15a OS=Bos taurus GN=RPS15A PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.195e-44
Identity = 84/118 (71.19%), Postives = 98/118 (83.05%), Query Frame = -3 
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            S+ NAEKRGKRQV+I P SKVI++FL  M KHGYIGE E +DDHRAGKIVV L GR+NKCGVISPRFDV +K++  W   LLPSRQ+G+IVLTT AGIM HEEARRK+ GGK+ GFF+
Sbjct:   13 SINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
[Close]
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS22_ASHGO (40S ribosomal protein S22 OS=Ashbya gossypii GN=RPS22A PE=3 SV=3)

HSP 1 Score: 178.333 bits (451), Expect = 1.561e-44
Identity = 82/115 (71.30%), Postives = 97/115 (84.35%), Query Frame = -3 
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            NAEK GKRQV+I PSSKVIIKFL  MQKHGYIGE EY+DDHR+GKIVV+L GR+NKCGVISPRF+V + ++  WT  LLP+RQ+GY++LTT AGIM HEEA RK+V GK+ GF Y
Sbjct:   16 NAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLTGRLNKCGVISPRFNVKINDVEKWTANLLPARQFGYVILTTSAGIMDHEEAHRKHVAGKILGFVY 130
The following BLAST results are available for this feature:
BLAST of CF836004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS22_KLULA4.108e-4572.1740S ribosomal protein S22 OS=Kluyveromyces lactis ... [more]
RS22_NEUCR7.006e-4572.0340S ribosomal protein S22 OS=Neurospora crassa GN=... [more]
RS15A_STRPU7.006e-4571.1940S ribosomal protein S15a OS=Strongylocentrotus p... [more]
RS15A_DROYA7.006e-4573.0440S ribosomal protein S15a OS=Drosophila yakuba GN... [more]
RS15A_DROME7.006e-4573.0440S ribosomal protein S15Aa OS=Drosophila melanoga... [more]
RS15A_RAT1.195e-4471.1940S ribosomal protein S15a OS=Rattus norvegicus GN... [more]
RS15A_MOUSE1.195e-4471.1940S ribosomal protein S15a OS=Mus musculus GN=Rps1... [more]
RS15A_HUMAN1.195e-4471.1940S ribosomal protein S15a OS=Homo sapiens GN=RPS1... [more]
RS15A_BOVIN1.195e-4471.1940S ribosomal protein S15a OS=Bos taurus GN=RPS15A... [more]
RS22_ASHGO1.561e-4471.3040S ribosomal protein S22 OS=Ashbya gossypii GN=RP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E07_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836004 ID=CF836004; Name=CF836004; organism=Citrus sinensis; type=EST; length=488bp
AGGCACCAATCCGAGTTTAGAAATGCATAGTTAAATCAAGTAAAACAAAG
AGAAGCTATTCCATTTGTGAACAAGTTCTTCCAAAGTACACAAACAAAAC
TCAAGTCCCATTCTCAATATGAACTTTGCCTAATAGAAAAAACCAAACAG
TTTACCACCAACGTTCTTCCTTCTCGCCTCTTCGTGGCCCATAATGCCAG
CACAAGTTGTCAGCACAATGTATCCATACTGTCTTGAGGGAAGCAACCTA
CCAGTCCAACCTACAATCTCCTTGACGCCAACATCAAAACGGGGACTGAT
AACCCCACATTTGTTCACTCTTCCGTTCAGTTCAACCACAATCTTACCAG
CTCTGTGGTCATCAACATACTCAGACTCACCAATGTACCCGTGCTTTTGC
ATCGCCAGAAGAAACTTAATGATAACCTTGGAGGATGGGCTGATCATAAC
CTGACGCTTCCCCCTTTTCTCGGCATTATACATGCTCT
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