CF836004

Overview
NameCF836004
Unique NameCF836004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS15B_DROME (40S ribosomal protein S15Ab OS=Drosophila melanogaster GN=RpS15Ab PE=2 SV=3)

HSP 1 Score: 177.563 bits (449), Expect = 2.662e-44
Identity = 83/115 (72.17%), Postives = 95/115 (82.61%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            NAEKRGKRQV++ P SKVIIKFL  M KHGYIGE E V+DHRAGKIVV L GR+NKCGVISPRFD  + +I  WT  LLPSRQ+GY+VLTT  GIM HEEARRK++GGK+ GFF+
Sbjct:   16 NAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEFEIVEDHRAGKIVVNLTGRLNKCGVISPRFDAPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS15A_PONAB (40S ribosomal protein S15a OS=Pongo abelii GN=RPS15A PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 3.477e-44
Identity = 83/118 (70.34%), Postives = 97/118 (82.20%), Query Frame = -3
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            S+ NAEKRGKRQV+I P SKVI++FL  M KHGYIGE E +DDHRAGKIVV L GR+NKCGVISPRFDV +K++  W   L PSRQ+G+IVLTT AGIM HEEARRK+ GGK+ GFF+
Sbjct:   13 SINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLFPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS15A_PARLI (40S ribosomal protein S15a OS=Paracentrotus lividus GN=RPS15A PE=2 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 5.931e-44
Identity = 83/115 (72.17%), Postives = 95/115 (82.61%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            NAEKR KRQV+I P SKV IKFL+ M KHGYIGE E VDDHR GKI+V LNGR+NKCGVISPRFDV + ++  WT  LLPSRQ+GY+VLTT  GIM HEEARRK+VGGK+ GFF+
Sbjct:   16 NAEKRCKRQVLIRPCSKVTIKFLMVMIKHGYIGEFEVVDDHRGGKIIVNLNGRLNKCGVISPRFDVPINDMEKWTSNLLPSRQFGYVVLTTSGGIMDHEEARRKHVGGKILGFFF 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS15A_ICTPU (40S ribosomal protein S15a OS=Ictalurus punctatus GN=rps15a PE=2 SV=3)

HSP 1 Score: 173.711 bits (439), Expect = 3.845e-43
Identity = 82/115 (71.30%), Postives = 94/115 (81.74%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            NAEKRGK QV+I P SKVI++FL  M KHGYIGE E +DDHRAGKIVV L GR+NKCGVISPRFDV +K++  W   LLPSRQ+G+IVLTT AGIM HEEARRK+ GGK  GFF+
Sbjct:   16 NAEKRGKAQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKSLGFFF 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS22_SCHPO (40S ribosomal protein S22 OS=Schizosaccharomyces pombe GN=rps22a PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 5.552e-42
Identity = 79/118 (66.95%), Postives = 96/118 (81.36%), Query Frame = -3
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            ++ NAE+RG+RQV+I PSSKVI+KFL  MQKHGYI E   +DDHR+GKIV++LNGR+NKCGVISPRF+V +K+I  W  +LLPSRQ G IVLTT  GIM H EAR K+ GGK+ GFFY
Sbjct:   13 NIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGKIVIQLNGRINKCGVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS15A_DICDI (40S ribosomal protein S15a OS=Dictyostelium discoideum GN=rps15a PE=2 SV=3)

HSP 1 Score: 163.696 bits (413), Expect = 3.979e-40
Identity = 78/118 (66.10%), Postives = 94/118 (79.66%), Query Frame = -3
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            S+ NAE++GKRQV++ PSSKVI+KFL  M K  YIGE E VDDHR+GKIV++L GR+NKCGVISPRFDV + EI  W   LLPSRQ+G+IVLTT  GIM H EA+ ++ GGKL GFFY
Sbjct:   13 SIVNAERQGKRQVLVRPSSKVIVKFLEVMMKKRYIGEFEIVDDHRSGKIVIDLIGRINKCGVISPRFDVTLDEIEKWASYLLPSRQFGHIVLTTSLGIMDHNEAKTRHTGGKLLGFFY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS22_AGABI (40S ribosomal protein S22 OS=Agaricus bisporus GN=rps22 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 6.786e-40
Identity = 78/118 (66.10%), Postives = 93/118 (78.81%), Query Frame = -3
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            S+ NA +RGKRQV++ PSSKV++KFL  MQ+HGYIGE E +DDHR GKI+V+LNGR+NK GVISPRF+V    I  W   LLPSR  G IVLTT +GI+ HEEARRKNVGGKL G+ Y
Sbjct:   13 SICNASRRGKRQVIVRPSSKVVVKFLSVMQRHGYIGEFEIIDDHRGGKIIVQLNGRLNKTGVISPRFNVQHNRIEQWINYLLPSRGIGIIVLTTSSGILDHEEARRKNVGGKLLGYVY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_CALMQ (30S ribosomal protein S8P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps8p PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 7.783e-28
Identity = 62/118 (52.54%), Postives = 78/118 (66.10%), Query Frame = -3
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            S+ NAE RG RQV+I PSSK+I   L  MQ++GY+GE EYV D R GK VV+L GR+N  G I PRF V V E+  W  + LP+RQ G ++LTT  G++ H EAR   VGG L  + Y
Sbjct:   13 SVKNAESRGDRQVIIWPSSKLIGNVLRVMQRYGYVGEFEYVYDGRGGKYVVQLLGRINDIGAIKPRFHVKVDELQKWEEKYLPARQVGILILTTSKGVVSHLEARENRVGGILVAYVY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_METS5 (30S ribosomal protein S8P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps8p PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.016e-27
Identity = 57/121 (47.11%), Postives = 84/121 (69.42%), Query Frame = -3
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVG---WTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            S+YN E R  +Q +I PSSK+I+  L  MQK GY+GE EY+DD R GKI+V+L GR+NKCG I+PR+ +  +E++    +  R LPS++ G I+++T  G+M H+EA R+  GG + G+ Y
Sbjct:   13 SLYNNEMRRNKQAIIMPSSKLIVNVLRVMQKEGYVGEFEYIDDGRWGKILVQLMGRINKCGAITPRYSLTYREMISLPDYIRRYLPSKEIGVIIVSTPKGVMTHKEAARQRTGGIVLGYVY 133          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: R15A5_ARATH (40S ribosomal protein S15a-5 OS=Arabidopsis thaliana GN=RPS15AE PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.734e-27
Identity = 59/118 (50.00%), Postives = 81/118 (68.64%), Query Frame = -3
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            ++ NAE+RGK  V + P S V+  FL  M++ GYI   +  D HR G+I V+L GRVN C  ++ R DV  KEI  +T R LP+RQ+GY+V+TT  GI+ HEEA ++NVGG++ GFFY
Sbjct:   12 TIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDLQGRVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVGGQVLGFFY 129          
The following BLAST results are available for this feature:
BLAST of CF836004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS15B_DROME2.662e-4472.1740S ribosomal protein S15Ab OS=Drosophila melanoga... [more]
RS15A_PONAB3.477e-4470.3440S ribosomal protein S15a OS=Pongo abelii GN=RPS1... [more]
RS15A_PARLI5.931e-4472.1740S ribosomal protein S15a OS=Paracentrotus lividu... [more]
RS15A_ICTPU3.845e-4371.3040S ribosomal protein S15a OS=Ictalurus punctatus ... [more]
RS22_SCHPO5.552e-4266.9540S ribosomal protein S22 OS=Schizosaccharomyces p... [more]
RS15A_DICDI3.979e-4066.1040S ribosomal protein S15a OS=Dictyostelium discoi... [more]
RS22_AGABI6.786e-4066.1040S ribosomal protein S22 OS=Agaricus bisporus GN=... [more]
RS8_CALMQ7.783e-2852.5430S ribosomal protein S8P OS=Caldivirga maquilinge... [more]
RS8_METS51.016e-2747.1130S ribosomal protein S8P OS=Metallosphaera sedula... [more]
R15A5_ARATH1.734e-2750.0040S ribosomal protein S15a-5 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E07_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836004 ID=CF836004; Name=CF836004; organism=Citrus sinensis; type=EST; length=488bp
AGGCACCAATCCGAGTTTAGAAATGCATAGTTAAATCAAGTAAAACAAAG
AGAAGCTATTCCATTTGTGAACAAGTTCTTCCAAAGTACACAAACAAAAC
TCAAGTCCCATTCTCAATATGAACTTTGCCTAATAGAAAAAACCAAACAG
TTTACCACCAACGTTCTTCCTTCTCGCCTCTTCGTGGCCCATAATGCCAG
CACAAGTTGTCAGCACAATGTATCCATACTGTCTTGAGGGAAGCAACCTA
CCAGTCCAACCTACAATCTCCTTGACGCCAACATCAAAACGGGGACTGAT
AACCCCACATTTGTTCACTCTTCCGTTCAGTTCAACCACAATCTTACCAG
CTCTGTGGTCATCAACATACTCAGACTCACCAATGTACCCGTGCTTTTGC
ATCGCCAGAAGAAACTTAATGATAACCTTGGAGGATGGGCTGATCATAAC
CTGACGCTTCCCCCTTTTCTCGGCATTATACATGCTCT
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