CF836004

Overview
NameCF836004
Unique NameCF836004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_THENV (30S ribosomal protein S8P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps8p PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.264e-27
Identity = 57/115 (49.57%), Postives = 77/115 (66.96%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            NAE  GKRQV I P +K+I   L  +Q+HGY+GE EY+DD R GK VV+L G++N  G I PR+ V  +EIV W  + LP+RQ G +V++T  G+M H EA+ K +GG L  + Y
Sbjct:   16 NAEAMGKRQVAIWPVNKLIYYTLRVLQRHGYVGEVEYIDDGRGGKYVVQLLGKINDIGPIKPRYPVKYREIVQWEQKFLPARQIGILVISTNQGVMSHVEAKEKKIGGVLLAYVY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_PYRCJ (30S ribosomal protein S8P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.264e-27
Identity = 57/115 (49.57%), Postives = 78/115 (67.83%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            NAE  GKRQV+I P +K+I   L  +Q++GY+GE EY+DD R GK VV+L G++N  G I PRF V  +EIV W  + LP+RQ G +V++T  G+M H EA+ K +GG L  + Y
Sbjct:   16 NAEAMGKRQVVIWPVNKLIYYTLRVLQRYGYVGEIEYIDDGRGGKYVVQLLGKINDIGAIRPRFPVKYREIVEWEQKYLPARQIGILVISTSQGVMSHLEAKEKKIGGVLLAYVY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_SULSO (30S ribosomal protein S8P OS=Sulfolobus solfataricus GN=rps8p PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.862e-27
Identity = 56/121 (46.28%), Postives = 82/121 (67.77%), Query Frame = -3
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVG---WTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            S+YN E R  +Q +I P+SK++I  L  MQK GY+GE EY+DD R GKI V+L GRVNKCG I+PR+ +  ++++    +  R LPS++ G I+++T  G+M H+EA R  +GG   G+ Y
Sbjct:   13 SIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYVRRYLPSKEIGIIIVSTSKGVMSHKEAARLRIGGVALGYVY 133          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_SULAC (30S ribosomal protein S8P OS=Sulfolobus acidocaldarius GN=rps8p PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.862e-27
Identity = 56/121 (46.28%), Postives = 83/121 (68.60%), Query Frame = -3
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDV---GVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            ++YN E R  +Q +I+P+SK+II  L  MQK GYIGE EY+DD RAGKI+V+L GR+NKCG ISPR+ +   G+  +  +  + LPS++ G I+++T  G+M H +  R+ +GG   G+ Y
Sbjct:   13 TLYNNEMRRNKQALITPASKLIISVLRVMQKEGYIGEFEYIDDGRAGKIIVQLLGRINKCGPISPRYPLDYNGLLRLPDYIRKYLPSKEIGIIIISTPKGVMSHRDGIREKIGGVTLGYVY 133          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_PYRFU (30S ribosomal protein S8P OS=Pyrococcus furiosus GN=rps8p PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.862e-27
Identity = 56/115 (48.70%), Postives = 79/115 (68.70%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            N+E+ GKR+V I P+SK+I + L  MQK+GYIGE E++DD RAG   V+L GR+NK G I PRF V V E   W  R LP+ ++G ++++T  G+M H+EA  K +GG+L  + Y
Sbjct:   16 NSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQLLGRINKAGAIKPRFPVKVSEFEKWEKRFLPAFEFGILIVSTSQGVMSHKEAIEKGIGGRLIAYVY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_PYRAB (30S ribosomal protein S8P OS=Pyrococcus abyssi GN=rps8p PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.045e-27
Identity = 54/115 (46.96%), Postives = 80/115 (69.57%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            N+E+ GKR+V I P+SK+I + L  MQK+GYIGE E++DD RAG   V+L G++NK G I PRF V  ++   W  R LP+ ++G ++++T  G+M H+EAR K +GG+L  + Y
Sbjct:   16 NSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQLLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKGIGGRLIAYVY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_SULTO (30S ribosomal protein S8P OS=Sulfolobus tokodaii GN=rps8p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 6.588e-27
Identity = 56/121 (46.28%), Postives = 86/121 (71.07%), Query Frame = -3
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIV---GWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            ++YN E R  +Q +I P+SK+II  L AMQK GYIGE E++DD R+GKIVV+L GR+NKCG I+PR+ +  K+++    +  R LPS++ G ++++T  G+M H++A R+ +GG   G+ Y
Sbjct:   13 TIYNNEMRRNKQAIIMPASKLIINVLRAMQKEGYIGEFEFIDDGRSGKIVVQLLGRINKCGPIAPRYPLKYKDLLTLPDYVRRYLPSKEIGVLIISTNKGVMTHKDAIRERIGGVALGYVY 133          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_SULIY (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 6.588e-27
Identity = 56/121 (46.28%), Postives = 82/121 (67.77%), Query Frame = -3
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVG---WTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            S+YN E R  +Q +I P+SK++I  L  MQK GY+GE EY+DD R GKI V+L GRVNKCG I+PR+ +  ++++    +  R LPS++ G I+++T  G+M H+EA R  +GG   G+ Y
Sbjct:   13 SIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGGVALGYVY 133          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_SULIN (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps8p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 6.588e-27
Identity = 56/121 (46.28%), Postives = 82/121 (67.77%), Query Frame = -3
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVG---WTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            S+YN E R  +Q +I P+SK++I  L  MQK GY+GE EY+DD R GKI V+L GRVNKCG I+PR+ +  ++++    +  R LPS++ G I+++T  G+M H+EA R  +GG   G+ Y
Sbjct:   13 SIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGGVALGYVY 133          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_SULIM (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 6.588e-27
Identity = 56/121 (46.28%), Postives = 82/121 (67.77%), Query Frame = -3
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVG---WTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            S+YN E R  +Q +I P+SK++I  L  MQK GY+GE EY+DD R GKI V+L GRVNKCG I+PR+ +  ++++    +  R LPS++ G I+++T  G+M H+EA R  +GG   G+ Y
Sbjct:   13 SIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGGVALGYVY 133          
The following BLAST results are available for this feature:
BLAST of CF836004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS8_THENV2.264e-2749.5730S ribosomal protein S8P OS=Thermoproteus neutrop... [more]
RS8_PYRCJ2.264e-2749.5730S ribosomal protein S8P OS=Pyrobaculum calidifon... [more]
RS8_SULSO3.862e-2746.2830S ribosomal protein S8P OS=Sulfolobus solfataric... [more]
RS8_SULAC3.862e-2746.2830S ribosomal protein S8P OS=Sulfolobus acidocalda... [more]
RS8_PYRFU3.862e-2748.7030S ribosomal protein S8P OS=Pyrococcus furiosus G... [more]
RS8_PYRAB5.045e-2746.9630S ribosomal protein S8P OS=Pyrococcus abyssi GN=... [more]
RS8_SULTO6.588e-2746.2830S ribosomal protein S8P OS=Sulfolobus tokodaii G... [more]
RS8_SULIY6.588e-2746.2830S ribosomal protein S8P OS=Sulfolobus islandicus... [more]
RS8_SULIN6.588e-2746.2830S ribosomal protein S8P OS=Sulfolobus islandicus... [more]
RS8_SULIM6.588e-2746.2830S ribosomal protein S8P OS=Sulfolobus islandicus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E07_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836004 ID=CF836004; Name=CF836004; organism=Citrus sinensis; type=EST; length=488bp
AGGCACCAATCCGAGTTTAGAAATGCATAGTTAAATCAAGTAAAACAAAG
AGAAGCTATTCCATTTGTGAACAAGTTCTTCCAAAGTACACAAACAAAAC
TCAAGTCCCATTCTCAATATGAACTTTGCCTAATAGAAAAAACCAAACAG
TTTACCACCAACGTTCTTCCTTCTCGCCTCTTCGTGGCCCATAATGCCAG
CACAAGTTGTCAGCACAATGTATCCATACTGTCTTGAGGGAAGCAACCTA
CCAGTCCAACCTACAATCTCCTTGACGCCAACATCAAAACGGGGACTGAT
AACCCCACATTTGTTCACTCTTCCGTTCAGTTCAACCACAATCTTACCAG
CTCTGTGGTCATCAACATACTCAGACTCACCAATGTACCCGTGCTTTTGC
ATCGCCAGAAGAAACTTAATGATAACCTTGGAGGATGGGCTGATCATAAC
CTGACGCTTCCCCCTTTTCTCGGCATTATACATGCTCT
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