CF836004
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_THENV (30S ribosomal protein S8P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps8p PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 2.264e-27 Identity = 57/115 (49.57%), Postives = 77/115 (66.96%), Query Frame = -3 Query: 133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477 NAE GKRQV I P +K+I L +Q+HGY+GE EY+DD R GK VV+L G++N G I PR+ V +EIV W + LP+RQ G +V++T G+M H EA+ K +GG L + Y Sbjct: 16 NAEAMGKRQVAIWPVNKLIYYTLRVLQRHGYVGEVEYIDDGRGGKYVVQLLGKINDIGPIKPRYPVKYREIVQWEQKFLPARQIGILVISTNQGVMSHVEAKEKKIGGVLLAYVY 130
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_PYRCJ (30S ribosomal protein S8P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps8p PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 2.264e-27 Identity = 57/115 (49.57%), Postives = 78/115 (67.83%), Query Frame = -3 Query: 133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477 NAE GKRQV+I P +K+I L +Q++GY+GE EY+DD R GK VV+L G++N G I PRF V +EIV W + LP+RQ G +V++T G+M H EA+ K +GG L + Y Sbjct: 16 NAEAMGKRQVVIWPVNKLIYYTLRVLQRYGYVGEIEYIDDGRGGKYVVQLLGKINDIGAIRPRFPVKYREIVEWEQKYLPARQIGILVISTSQGVMSHLEAKEKKIGGVLLAYVY 130
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_SULSO (30S ribosomal protein S8P OS=Sulfolobus solfataricus GN=rps8p PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 3.862e-27 Identity = 56/121 (46.28%), Postives = 82/121 (67.77%), Query Frame = -3 Query: 133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVG---WTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486 S+YN E R +Q +I P+SK++I L MQK GY+GE EY+DD R GKI V+L GRVNKCG I+PR+ + ++++ + R LPS++ G I+++T G+M H+EA R +GG G+ Y Sbjct: 13 SIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYVRRYLPSKEIGIIIVSTSKGVMSHKEAARLRIGGVALGYVY 133
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_SULAC (30S ribosomal protein S8P OS=Sulfolobus acidocaldarius GN=rps8p PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 3.862e-27 Identity = 56/121 (46.28%), Postives = 83/121 (68.60%), Query Frame = -3 Query: 133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDV---GVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486 ++YN E R +Q +I+P+SK+II L MQK GYIGE EY+DD RAGKI+V+L GR+NKCG ISPR+ + G+ + + + LPS++ G I+++T G+M H + R+ +GG G+ Y Sbjct: 13 TLYNNEMRRNKQALITPASKLIISVLRVMQKEGYIGEFEYIDDGRAGKIIVQLLGRINKCGPISPRYPLDYNGLLRLPDYIRKYLPSKEIGIIIISTPKGVMSHRDGIREKIGGVTLGYVY 133
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_PYRFU (30S ribosomal protein S8P OS=Pyrococcus furiosus GN=rps8p PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 3.862e-27 Identity = 56/115 (48.70%), Postives = 79/115 (68.70%), Query Frame = -3 Query: 133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477 N+E+ GKR+V I P+SK+I + L MQK+GYIGE E++DD RAG V+L GR+NK G I PRF V V E W R LP+ ++G ++++T G+M H+EA K +GG+L + Y Sbjct: 16 NSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQLLGRINKAGAIKPRFPVKVSEFEKWEKRFLPAFEFGILIVSTSQGVMSHKEAIEKGIGGRLIAYVY 130
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_PYRAB (30S ribosomal protein S8P OS=Pyrococcus abyssi GN=rps8p PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 5.045e-27 Identity = 54/115 (46.96%), Postives = 80/115 (69.57%), Query Frame = -3 Query: 133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477 N+E+ GKR+V I P+SK+I + L MQK+GYIGE E++DD RAG V+L G++NK G I PRF V ++ W R LP+ ++G ++++T G+M H+EAR K +GG+L + Y Sbjct: 16 NSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQLLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKGIGGRLIAYVY 130
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_SULTO (30S ribosomal protein S8P OS=Sulfolobus tokodaii GN=rps8p PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 6.588e-27 Identity = 56/121 (46.28%), Postives = 86/121 (71.07%), Query Frame = -3 Query: 133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIV---GWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486 ++YN E R +Q +I P+SK+II L AMQK GYIGE E++DD R+GKIVV+L GR+NKCG I+PR+ + K+++ + R LPS++ G ++++T G+M H++A R+ +GG G+ Y Sbjct: 13 TIYNNEMRRNKQAIIMPASKLIINVLRAMQKEGYIGEFEFIDDGRSGKIVVQLLGRINKCGPIAPRYPLKYKDLLTLPDYVRRYLPSKEIGVLIISTNKGVMTHKDAIRERIGGVALGYVY 133
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_SULIY (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps8p PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 6.588e-27 Identity = 56/121 (46.28%), Postives = 82/121 (67.77%), Query Frame = -3 Query: 133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVG---WTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486 S+YN E R +Q +I P+SK++I L MQK GY+GE EY+DD R GKI V+L GRVNKCG I+PR+ + ++++ + R LPS++ G I+++T G+M H+EA R +GG G+ Y Sbjct: 13 SIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGGVALGYVY 133
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_SULIN (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps8p PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 6.588e-27 Identity = 56/121 (46.28%), Postives = 82/121 (67.77%), Query Frame = -3 Query: 133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVG---WTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486 S+YN E R +Q +I P+SK++I L MQK GY+GE EY+DD R GKI V+L GRVNKCG I+PR+ + ++++ + R LPS++ G I+++T G+M H+EA R +GG G+ Y Sbjct: 13 SIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGGVALGYVY 133
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_SULIM (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps8p PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 6.588e-27 Identity = 56/121 (46.28%), Postives = 82/121 (67.77%), Query Frame = -3 Query: 133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVG---WTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486 S+YN E R +Q +I P+SK++I L MQK GY+GE EY+DD R GKI V+L GRVNKCG I+PR+ + ++++ + R LPS++ G I+++T G+M H+EA R +GG G+ Y Sbjct: 13 SIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGGVALGYVY 133 The following BLAST results are available for this feature:
BLAST of CF836004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 98
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836004 ID=CF836004; Name=CF836004; organism=Citrus sinensis; type=EST; length=488bpback to top |