CF836004
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_SULIL (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps8p PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 6.588e-27 Identity = 56/121 (46.28%), Postives = 82/121 (67.77%), Query Frame = -3 Query: 133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVG---WTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486 S+YN E R +Q +I P+SK++I L MQK GY+GE EY+DD R GKI V+L GRVNKCG I+PR+ + ++++ + R LPS++ G I+++T G+M H+EA R +GG G+ Y Sbjct: 13 SIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGGVALGYVY 133
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_SULIK (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps8p PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 6.588e-27 Identity = 56/121 (46.28%), Postives = 82/121 (67.77%), Query Frame = -3 Query: 133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVG---WTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486 S+YN E R +Q +I P+SK++I L MQK GY+GE EY+DD R GKI V+L GRVNKCG I+PR+ + ++++ + R LPS++ G I+++T G+M H+EA R +GG G+ Y Sbjct: 13 SIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGGVALGYVY 133
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_SULIA (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain M.16.27) GN=rps8p PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 6.588e-27 Identity = 56/121 (46.28%), Postives = 82/121 (67.77%), Query Frame = -3 Query: 133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVG---WTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486 S+YN E R +Q +I P+SK++I L MQK GY+GE EY+DD R GKI V+L GRVNKCG I+PR+ + ++++ + R LPS++ G I+++T G+M H+EA R +GG G+ Y Sbjct: 13 SIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGGVALGYVY 133
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_PYRHO (30S ribosomal protein S8P OS=Pyrococcus horikoshii GN=rps8p PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 1.124e-26 Identity = 54/115 (46.96%), Postives = 79/115 (68.70%), Query Frame = -3 Query: 133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477 N+E+ GKR++ I P+SK+I + L MQK+GYIGE E++DD RAG V+L GR+NK G I PRF V E W R LP+ ++G ++++T G+M H+EAR + +GG+L + Y Sbjct: 16 NSERVGKREIYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQLLGRINKAGAIKPRFPVKATEYEKWEKRFLPAFEFGILIVSTSQGVMSHKEARDRGIGGRLIAYVY 130
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: R15A2_ARATH (40S ribosomal protein S15a-2 OS=Arabidopsis thaliana GN=RPS15AB PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 1.917e-26 Identity = 59/118 (50.00%), Postives = 80/118 (67.80%), Query Frame = -3 Query: 133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486 ++ NAEKRGK V + P S V+ FL M++ GYI + D HR G+I V+L GRVN C ++ R DV EI +T R LP+RQ+GYIV+TT GI+ HEEA ++NVGG++ GFF+ Sbjct: 12 TIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRITVDLQGRVNDCKALTYRQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNVGGQVLGFFH 129
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_UNCMA (30S ribosomal protein S8P OS=Uncultured methanogenic archaeon RC-I GN=rps8p PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 3.270e-26 Identity = 52/115 (45.22%), Postives = 77/115 (66.96%), Query Frame = -3 Query: 133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477 NAE GK +I P+SK+I L MQ GY+GE E+VD+ +AG++ V+L G++NKCGV+ PRF VG E+ W R LP+R +G ++LTT G+M H +A + +GG++ + Y Sbjct: 16 NAETTGKTDCVIDPASKIIGNVLKVMQDQGYVGEFEFVDNGKAGQLKVKLIGKINKCGVVKPRFAVGKTEMEKWEKRYLPARNFGTLILTTSKGVMSHYDAAKMGIGGEILAYVY 130
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_HYPBU (30S ribosomal protein S8P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps8p PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 3.270e-26 Identity = 57/121 (47.11%), Postives = 79/121 (65.29%), Query Frame = -3 Query: 133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIV---GWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486 ++ NAE R K +V+I P+SK+I L MQ+ GYIGE EY+DD R GKI V L GR+NK GVI PRF V K+++ W + LPSR G ++++T G+M H EA ++ +GG L + Y Sbjct: 13 AIVNAEMRAKPEVIIMPASKLIANVLRVMQREGYIGEFEYIDDGRWGKIRVRLLGRINKAGVIKPRFSVKYKDLIRMPDWLRKYLPSRDIGILIISTSQGVMSHREAIQRRIGGVLLAYVY 133
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_PYRIL (30S ribosomal protein S8P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps8p PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 4.270e-26 Identity = 54/115 (46.96%), Postives = 78/115 (67.83%), Query Frame = -3 Query: 133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477 NAE GK+QV+I P +K+I L +Q++GY+GE EY+DD R GK VV+L G++N G I PR+ V +EIV W + LP+RQ G +V++T G+M H EA+ + +GG L + Y Sbjct: 16 NAEIMGKKQVVIWPVNKLIYHTLRVLQRYGYVGEIEYIDDGRGGKYVVQLLGKINDIGPIRPRYPVKYREIVQWEQKFLPARQIGILVISTSQGVMSHIEAKERKIGGVLLAYVY 130
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_THESM (30S ribosomal protein S8P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps8p PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 5.577e-26 Identity = 56/115 (48.70%), Postives = 78/115 (67.83%), Query Frame = -3 Query: 133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477 N+EK GK +V I P+SK+I + L MQ++GYIGE E++DD RAG V+L G+VNK G I PRF V KE W R LP+ ++G +V++T G+M H+EA K +GG+L + Y Sbjct: 16 NSEKVGKSEVYIKPASKLIGEVLRVMQENGYIGEFEFIDDGRAGIYRVQLLGKVNKAGAIKPRFSVKAKEYEKWEKRFLPAFEFGILVVSTSQGVMTHKEALEKGIGGRLIAYVY 130
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_THEGJ (30S ribosomal protein S8P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps8p PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 9.514e-26 Identity = 53/115 (46.09%), Postives = 79/115 (68.70%), Query Frame = -3 Query: 133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477 N+E+ GK++V I P+SK+I + L MQ++GYIGE E++DD RAG V+L G++NK G I PRF V K W R LP+ ++G ++++T G+M H+EAR K +GG+L + Y Sbjct: 16 NSERVGKKEVYIKPASKLIGEVLRVMQENGYIGEFEFIDDGRAGIYRVQLIGKINKAGAIKPRFPVKAKNYEYWEKRFLPAFEFGILIVSTSQGVMTHKEAREKGIGGRLIAYVY 130 The following BLAST results are available for this feature:
BLAST of CF836004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 98
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836004 ID=CF836004; Name=CF836004; organism=Citrus sinensis; type=EST; length=488bpback to top |