CF836004

Overview
NameCF836004
Unique NameCF836004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_SULIL (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 6.588e-27
Identity = 56/121 (46.28%), Postives = 82/121 (67.77%), Query Frame = -3
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVG---WTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            S+YN E R  +Q +I P+SK++I  L  MQK GY+GE EY+DD R GKI V+L GRVNKCG I+PR+ +  ++++    +  R LPS++ G I+++T  G+M H+EA R  +GG   G+ Y
Sbjct:   13 SIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGGVALGYVY 133          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_SULIK (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps8p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 6.588e-27
Identity = 56/121 (46.28%), Postives = 82/121 (67.77%), Query Frame = -3
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVG---WTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            S+YN E R  +Q +I P+SK++I  L  MQK GY+GE EY+DD R GKI V+L GRVNKCG I+PR+ +  ++++    +  R LPS++ G I+++T  G+M H+EA R  +GG   G+ Y
Sbjct:   13 SIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGGVALGYVY 133          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_SULIA (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain M.16.27) GN=rps8p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 6.588e-27
Identity = 56/121 (46.28%), Postives = 82/121 (67.77%), Query Frame = -3
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVG---WTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            S+YN E R  +Q +I P+SK++I  L  MQK GY+GE EY+DD R GKI V+L GRVNKCG I+PR+ +  ++++    +  R LPS++ G I+++T  G+M H+EA R  +GG   G+ Y
Sbjct:   13 SIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGGVALGYVY 133          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_PYRHO (30S ribosomal protein S8P OS=Pyrococcus horikoshii GN=rps8p PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.124e-26
Identity = 54/115 (46.96%), Postives = 79/115 (68.70%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            N+E+ GKR++ I P+SK+I + L  MQK+GYIGE E++DD RAG   V+L GR+NK G I PRF V   E   W  R LP+ ++G ++++T  G+M H+EAR + +GG+L  + Y
Sbjct:   16 NSERVGKREIYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQLLGRINKAGAIKPRFPVKATEYEKWEKRFLPAFEFGILIVSTSQGVMSHKEARDRGIGGRLIAYVY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: R15A2_ARATH (40S ribosomal protein S15a-2 OS=Arabidopsis thaliana GN=RPS15AB PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.917e-26
Identity = 59/118 (50.00%), Postives = 80/118 (67.80%), Query Frame = -3
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            ++ NAEKRGK  V + P S V+  FL  M++ GYI   +  D HR G+I V+L GRVN C  ++ R DV   EI  +T R LP+RQ+GYIV+TT  GI+ HEEA ++NVGG++ GFF+
Sbjct:   12 TIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRITVDLQGRVNDCKALTYRQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNVGGQVLGFFH 129          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_UNCMA (30S ribosomal protein S8P OS=Uncultured methanogenic archaeon RC-I GN=rps8p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.270e-26
Identity = 52/115 (45.22%), Postives = 77/115 (66.96%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            NAE  GK   +I P+SK+I   L  MQ  GY+GE E+VD+ +AG++ V+L G++NKCGV+ PRF VG  E+  W  R LP+R +G ++LTT  G+M H +A +  +GG++  + Y
Sbjct:   16 NAETTGKTDCVIDPASKIIGNVLKVMQDQGYVGEFEFVDNGKAGQLKVKLIGKINKCGVVKPRFAVGKTEMEKWEKRYLPARNFGTLILTTSKGVMSHYDAAKMGIGGEILAYVY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_HYPBU (30S ribosomal protein S8P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps8p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.270e-26
Identity = 57/121 (47.11%), Postives = 79/121 (65.29%), Query Frame = -3
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIV---GWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            ++ NAE R K +V+I P+SK+I   L  MQ+ GYIGE EY+DD R GKI V L GR+NK GVI PRF V  K+++    W  + LPSR  G ++++T  G+M H EA ++ +GG L  + Y
Sbjct:   13 AIVNAEMRAKPEVIIMPASKLIANVLRVMQREGYIGEFEYIDDGRWGKIRVRLLGRINKAGVIKPRFSVKYKDLIRMPDWLRKYLPSRDIGILIISTSQGVMSHREAIQRRIGGVLLAYVY 133          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_PYRIL (30S ribosomal protein S8P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps8p PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.270e-26
Identity = 54/115 (46.96%), Postives = 78/115 (67.83%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            NAE  GK+QV+I P +K+I   L  +Q++GY+GE EY+DD R GK VV+L G++N  G I PR+ V  +EIV W  + LP+RQ G +V++T  G+M H EA+ + +GG L  + Y
Sbjct:   16 NAEIMGKKQVVIWPVNKLIYHTLRVLQRYGYVGEIEYIDDGRGGKYVVQLLGKINDIGPIRPRYPVKYREIVQWEQKFLPARQIGILVISTSQGVMSHIEAKERKIGGVLLAYVY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_THESM (30S ribosomal protein S8P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps8p PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 5.577e-26
Identity = 56/115 (48.70%), Postives = 78/115 (67.83%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            N+EK GK +V I P+SK+I + L  MQ++GYIGE E++DD RAG   V+L G+VNK G I PRF V  KE   W  R LP+ ++G +V++T  G+M H+EA  K +GG+L  + Y
Sbjct:   16 NSEKVGKSEVYIKPASKLIGEVLRVMQENGYIGEFEFIDDGRAGIYRVQLLGKVNKAGAIKPRFSVKAKEYEKWEKRFLPAFEFGILVVSTSQGVMTHKEALEKGIGGRLIAYVY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_THEGJ (30S ribosomal protein S8P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps8p PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 9.514e-26
Identity = 53/115 (46.09%), Postives = 79/115 (68.70%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            N+E+ GK++V I P+SK+I + L  MQ++GYIGE E++DD RAG   V+L G++NK G I PRF V  K    W  R LP+ ++G ++++T  G+M H+EAR K +GG+L  + Y
Sbjct:   16 NSERVGKKEVYIKPASKLIGEVLRVMQENGYIGEFEFIDDGRAGIYRVQLIGKINKAGAIKPRFPVKAKNYEYWEKRFLPAFEFGILIVSTSQGVMTHKEAREKGIGGRLIAYVY 130          
The following BLAST results are available for this feature:
BLAST of CF836004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS8_SULIL6.588e-2746.2830S ribosomal protein S8P OS=Sulfolobus islandicus... [more]
RS8_SULIK6.588e-2746.2830S ribosomal protein S8P OS=Sulfolobus islandicus... [more]
RS8_SULIA6.588e-2746.2830S ribosomal protein S8P OS=Sulfolobus islandicus... [more]
RS8_PYRHO1.124e-2646.9630S ribosomal protein S8P OS=Pyrococcus horikoshii... [more]
R15A2_ARATH1.917e-2650.0040S ribosomal protein S15a-2 OS=Arabidopsis thalia... [more]
RS8_UNCMA3.270e-2645.2230S ribosomal protein S8P OS=Uncultured methanogen... [more]
RS8_HYPBU3.270e-2647.1130S ribosomal protein S8P OS=Hyperthermus butylicu... [more]
RS8_PYRIL4.270e-2646.9630S ribosomal protein S8P OS=Pyrobaculum islandicu... [more]
RS8_THESM5.577e-2648.7030S ribosomal protein S8P OS=Thermococcus sibiricu... [more]
RS8_THEGJ9.514e-2646.0930S ribosomal protein S8P OS=Thermococcus gammatol... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E07_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836004 ID=CF836004; Name=CF836004; organism=Citrus sinensis; type=EST; length=488bp
AGGCACCAATCCGAGTTTAGAAATGCATAGTTAAATCAAGTAAAACAAAG
AGAAGCTATTCCATTTGTGAACAAGTTCTTCCAAAGTACACAAACAAAAC
TCAAGTCCCATTCTCAATATGAACTTTGCCTAATAGAAAAAACCAAACAG
TTTACCACCAACGTTCTTCCTTCTCGCCTCTTCGTGGCCCATAATGCCAG
CACAAGTTGTCAGCACAATGTATCCATACTGTCTTGAGGGAAGCAACCTA
CCAGTCCAACCTACAATCTCCTTGACGCCAACATCAAAACGGGGACTGAT
AACCCCACATTTGTTCACTCTTCCGTTCAGTTCAACCACAATCTTACCAG
CTCTGTGGTCATCAACATACTCAGACTCACCAATGTACCCGTGCTTTTGC
ATCGCCAGAAGAAACTTAATGATAACCTTGGAGGATGGGCTGATCATAAC
CTGACGCTTCCCCCTTTTCTCGGCATTATACATGCTCT
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