CF836004

Overview
NameCF836004
Unique NameCF836004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_PYRAR (30S ribosomal protein S8P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps8p PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.623e-25
Identity = 54/115 (46.96%), Postives = 76/115 (66.09%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            NAE  GKRQV I P +K+    L  +Q++GY+GE EYVDD R GK +V+L G++N  G I PR+ V  +EIV W  + LP+RQ G +V++T  G++ H EA+ K +GG L  + Y
Sbjct:   16 NAEVMGKRQVTIWPVNKLTYYTLRVLQRYGYVGEIEYVDDGRGGKYIVQLLGKINDIGPIRPRYPVKYREIVQWEQKFLPARQIGILVISTSQGVVSHIEAKEKKIGGVLLAYVY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_THEPD (30S ribosomal protein S8P OS=Thermofilum pendens (strain Hrk 5) GN=rps8p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.119e-25
Identity = 55/118 (46.61%), Postives = 76/118 (64.41%), Query Frame = -3
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            ++ N E RGK+Q +I PSSK+I+  L  +++ GYIG+ E +DD R GKIVV L GR+NK GVI PR+ V   E   W    LPSR  G ++++T  G+M H EA+ K +GG L  + Y
Sbjct:   12 TIMNNEVRGKKQCVIYPSSKLIVAVLDTLKRSGYIGDFELIDDGRGGKIVVNLLGRINKIGVIKPRYPVKKNEFEAWEREYLPSRDVGLLIVSTPKGVMTHREAKEKGLGGVLLAYVY 129          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_THEON (30S ribosomal protein S8P OS=Thermococcus onnurineus (strain NA1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.119e-25
Identity = 52/115 (45.22%), Postives = 79/115 (68.70%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            N+E+ GK++V I P+SK+I + L  MQ++GYIGE E++DD RAG   V+L G++NK G I PRF V  +E   W  R LP+ ++G ++++T  G+M H+EA  K +GG+L  + Y
Sbjct:   16 NSERVGKKEVYIKPASKLIGEVLRVMQENGYIGEFEFIDDGRAGIYRVQLIGKINKAGAIKPRFPVKAREYEAWEKRFLPAFEFGILIVSTSQGVMTHKEAIEKGIGGRLIAYVY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_METTH (30S ribosomal protein S8P OS=Methanobacterium thermoautotrophicum GN=rps8p PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 2.768e-25
Identity = 56/115 (48.70%), Postives = 76/115 (66.09%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            N E RG  +  I+P+SK+I + L  MQK GYIGE EYVDD RAGK +VEL G +N CGVI PR  V   E   +  R LP++ +G I+++T  GIM H+EA+ + +GG+L  + Y
Sbjct:   16 NNEIRGNVKCRITPASKLIGRVLRTMQKEGYIGEFEYVDDGRAGKFIVELEGNINHCGVIKPRHAVKKDEFEKFEKRYLPAKNFGIIIVSTPEGIMTHKEAKDRGIGGRLLAYVY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_METBU (30S ribosomal protein S8P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps8p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.615e-25
Identity = 55/115 (47.83%), Postives = 72/115 (62.61%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            NAE  GK    I P+SK+I   L  M   GYIG+ E+V+D +AG   VEL GR+NKCG I PR+ VGV E   W  + LP++ +G ++LTT  G++   EAR  NVGG+L  F Y
Sbjct:   16 NAEAVGKDSCTIRPASKLIGNVLKVMNDRGYIGDFEFVEDGKAGVYTVELIGRINKCGAIKPRYSVGVTEFERWEKQFLPAKNFGVLILTTPKGVISQYEARENNVGGQLLSFVY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_METTP (30S ribosomal protein S8P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps8p PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.722e-25
Identity = 52/115 (45.22%), Postives = 75/115 (65.22%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            NAE  GK + +I P+SK+I   L  M   GYIGE E++DD ++G   V+L GR+N+CGVI PRF + V E+  W  R LP+R +G ++L+T  G+M H +AR + +GG L  + Y
Sbjct:   15 NAENVGKPECIIKPASKLIAMTLKVMADLGYIGEFEFIDDGKSGMFKVKLLGRINRCGVIKPRFAIKVAELEKWERRFLPARNFGVLILSTSQGVMPHTDARARGIGGHLLAYVY 129          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_KORCO (30S ribosomal protein S8P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps8p PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.722e-25
Identity = 56/118 (47.46%), Postives = 76/118 (64.41%), Query Frame = -3
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            ++ N    GKR+V+I+ +SK+I K L  +++HGYI E EYVDD R GK VV LNGR+NK GVI PRF V V E   W    LP+   G I+++T  G+M H EA+ + +GG L  + Y
Sbjct:   13 TLTNGSMLGKREVVINIASKLIGKVLKVLKEHGYIDEFEYVDDGRFGKYVVRLNGRINKAGVIKPRFPVKVGEFSRWEKIYLPAENVGLIIVSTNQGVMTHREAKERGIGGVLIAYCY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_METPE (30S ribosomal protein S8P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rps8p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 6.167e-25
Identity = 50/118 (42.37%), Postives = 77/118 (65.25%), Query Frame = -3
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            ++ NA   GK + ++ PSSK++   L  MQ  GYIG  + +DD R G+  V L+GR+NKCG I+PR+ VG+ E+  W  R LP + +G ++L+T  G++ H +AR+  +GG+L GF Y
Sbjct:   13 ALKNAGDCGKPECILEPSSKLLGAMLRIMQDAGYIGSFDMIDDGRGGQFRVHLSGRINKCGAITPRYSVGLDELEYWETRYLPGKNFGLLILSTSRGVLTHNQARQNGIGGELLGFVY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_METIG (30S ribosomal protein S8P OS=Methanococcus igneus GN=rps8p PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.052e-24
Identity = 53/115 (46.09%), Postives = 75/115 (65.22%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            N E+ GK+   I P+SK+I + L  MQ HGYIGE E+++D RAG   VEL G++NKCG I PR+ V   E   +  R LP+R +G ++++T  GIM H EA+ K +GG+L  + Y
Sbjct:   16 NCERVGKKVFYIKPASKLIGRVLKVMQDHGYIGEFEFIEDGRAGIFKVELIGKINKCGAIKPRYAVKKHEFEKFEKRYLPARDFGLLIVSTSQGIMTHYEAKEKGIGGRLISYVY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_METKA (30S ribosomal protein S8P OS=Methanopyrus kandleri GN=rps8p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.374e-24
Identity = 51/115 (44.35%), Postives = 76/115 (66.09%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            N E  G ++ +I P+SK+I + L  MQ++GYIG  E++DD R+GK +V+L GR+N CGVI PR  V   E   W  R LP+R +G +++TT  G+M H EA+ + +GG+L  + Y
Sbjct:   16 NNEMVGNKECVIEPASKLIGRVLKVMQEYGYIGSFEFIDDGRSGKFLVKLVGRINDCGVIKPRHPVKKDEWEYWEQRYLPARDFGLLIVTTPEGVMSHYEAKERGIGGRLLAYVY 130          
The following BLAST results are available for this feature:
BLAST of CF836004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS8_PYRAR1.623e-2546.9630S ribosomal protein S8P OS=Pyrobaculum arsenatic... [more]
RS8_THEPD2.119e-2546.6130S ribosomal protein S8P OS=Thermofilum pendens (... [more]
RS8_THEON2.119e-2545.2230S ribosomal protein S8P OS=Thermococcus onnurine... [more]
RS8_METTH2.768e-2548.7030S ribosomal protein S8P OS=Methanobacterium ther... [more]
RS8_METBU3.615e-2547.8330S ribosomal protein S8P OS=Methanococcoides burt... [more]
RS8_METTP4.722e-2545.2230S ribosomal protein S8P OS=Methanosaeta thermoph... [more]
RS8_KORCO4.722e-2547.4630S ribosomal protein S8P OS=Korarchaeum cryptofil... [more]
RS8_METPE6.167e-2542.3730S ribosomal protein S8P OS=Methanosphaerula palu... [more]
RS8_METIG1.052e-2446.0930S ribosomal protein S8P OS=Methanococcus igneus ... [more]
RS8_METKA1.374e-2444.3530S ribosomal protein S8P OS=Methanopyrus kandleri... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E07_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836004 ID=CF836004; Name=CF836004; organism=Citrus sinensis; type=EST; length=488bp
AGGCACCAATCCGAGTTTAGAAATGCATAGTTAAATCAAGTAAAACAAAG
AGAAGCTATTCCATTTGTGAACAAGTTCTTCCAAAGTACACAAACAAAAC
TCAAGTCCCATTCTCAATATGAACTTTGCCTAATAGAAAAAACCAAACAG
TTTACCACCAACGTTCTTCCTTCTCGCCTCTTCGTGGCCCATAATGCCAG
CACAAGTTGTCAGCACAATGTATCCATACTGTCTTGAGGGAAGCAACCTA
CCAGTCCAACCTACAATCTCCTTGACGCCAACATCAAAACGGGGACTGAT
AACCCCACATTTGTTCACTCTTCCGTTCAGTTCAACCACAATCTTACCAG
CTCTGTGGTCATCAACATACTCAGACTCACCAATGTACCCGTGCTTTTGC
ATCGCCAGAAGAAACTTAATGATAACCTTGGAGGATGGGCTGATCATAAC
CTGACGCTTCCCCCTTTTCTCGGCATTATACATGCTCT
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