CF836004
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_PYRAR (30S ribosomal protein S8P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps8p PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 1.623e-25 Identity = 54/115 (46.96%), Postives = 76/115 (66.09%), Query Frame = -3 Query: 133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477 NAE GKRQV I P +K+ L +Q++GY+GE EYVDD R GK +V+L G++N G I PR+ V +EIV W + LP+RQ G +V++T G++ H EA+ K +GG L + Y Sbjct: 16 NAEVMGKRQVTIWPVNKLTYYTLRVLQRYGYVGEIEYVDDGRGGKYIVQLLGKINDIGPIRPRYPVKYREIVQWEQKFLPARQIGILVISTSQGVVSHIEAKEKKIGGVLLAYVY 130
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_THEPD (30S ribosomal protein S8P OS=Thermofilum pendens (strain Hrk 5) GN=rps8p PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 2.119e-25 Identity = 55/118 (46.61%), Postives = 76/118 (64.41%), Query Frame = -3 Query: 133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486 ++ N E RGK+Q +I PSSK+I+ L +++ GYIG+ E +DD R GKIVV L GR+NK GVI PR+ V E W LPSR G ++++T G+M H EA+ K +GG L + Y Sbjct: 12 TIMNNEVRGKKQCVIYPSSKLIVAVLDTLKRSGYIGDFELIDDGRGGKIVVNLLGRINKIGVIKPRYPVKKNEFEAWEREYLPSRDVGLLIVSTPKGVMTHREAKEKGLGGVLLAYVY 129
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_THEON (30S ribosomal protein S8P OS=Thermococcus onnurineus (strain NA1) GN=rps8p PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 2.119e-25 Identity = 52/115 (45.22%), Postives = 79/115 (68.70%), Query Frame = -3 Query: 133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477 N+E+ GK++V I P+SK+I + L MQ++GYIGE E++DD RAG V+L G++NK G I PRF V +E W R LP+ ++G ++++T G+M H+EA K +GG+L + Y Sbjct: 16 NSERVGKKEVYIKPASKLIGEVLRVMQENGYIGEFEFIDDGRAGIYRVQLIGKINKAGAIKPRFPVKAREYEAWEKRFLPAFEFGILIVSTSQGVMTHKEAIEKGIGGRLIAYVY 130
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_METTH (30S ribosomal protein S8P OS=Methanobacterium thermoautotrophicum GN=rps8p PE=3 SV=2) HSP 1 Score: 114.39 bits (285), Expect = 2.768e-25 Identity = 56/115 (48.70%), Postives = 76/115 (66.09%), Query Frame = -3 Query: 133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477 N E RG + I+P+SK+I + L MQK GYIGE EYVDD RAGK +VEL G +N CGVI PR V E + R LP++ +G I+++T GIM H+EA+ + +GG+L + Y Sbjct: 16 NNEIRGNVKCRITPASKLIGRVLRTMQKEGYIGEFEYVDDGRAGKFIVELEGNINHCGVIKPRHAVKKDEFEKFEKRYLPAKNFGIIIVSTPEGIMTHKEAKDRGIGGRLLAYVY 130
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_METBU (30S ribosomal protein S8P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps8p PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 3.615e-25 Identity = 55/115 (47.83%), Postives = 72/115 (62.61%), Query Frame = -3 Query: 133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477 NAE GK I P+SK+I L M GYIG+ E+V+D +AG VEL GR+NKCG I PR+ VGV E W + LP++ +G ++LTT G++ EAR NVGG+L F Y Sbjct: 16 NAEAVGKDSCTIRPASKLIGNVLKVMNDRGYIGDFEFVEDGKAGVYTVELIGRINKCGAIKPRYSVGVTEFERWEKQFLPAKNFGVLILTTPKGVISQYEARENNVGGQLLSFVY 130
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_METTP (30S ribosomal protein S8P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps8p PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 4.722e-25 Identity = 52/115 (45.22%), Postives = 75/115 (65.22%), Query Frame = -3 Query: 133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477 NAE GK + +I P+SK+I L M GYIGE E++DD ++G V+L GR+N+CGVI PRF + V E+ W R LP+R +G ++L+T G+M H +AR + +GG L + Y Sbjct: 15 NAENVGKPECIIKPASKLIAMTLKVMADLGYIGEFEFIDDGKSGMFKVKLLGRINRCGVIKPRFAIKVAELEKWERRFLPARNFGVLILSTSQGVMPHTDARARGIGGHLLAYVY 129
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_KORCO (30S ribosomal protein S8P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps8p PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 4.722e-25 Identity = 56/118 (47.46%), Postives = 76/118 (64.41%), Query Frame = -3 Query: 133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486 ++ N GKR+V+I+ +SK+I K L +++HGYI E EYVDD R GK VV LNGR+NK GVI PRF V V E W LP+ G I+++T G+M H EA+ + +GG L + Y Sbjct: 13 TLTNGSMLGKREVVINIASKLIGKVLKVLKEHGYIDEFEYVDDGRFGKYVVRLNGRINKAGVIKPRFPVKVGEFSRWEKIYLPAENVGLIIVSTNQGVMTHREAKERGIGGVLIAYCY 130
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_METPE (30S ribosomal protein S8P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rps8p PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 6.167e-25 Identity = 50/118 (42.37%), Postives = 77/118 (65.25%), Query Frame = -3 Query: 133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486 ++ NA GK + ++ PSSK++ L MQ GYIG + +DD R G+ V L+GR+NKCG I+PR+ VG+ E+ W R LP + +G ++L+T G++ H +AR+ +GG+L GF Y Sbjct: 13 ALKNAGDCGKPECILEPSSKLLGAMLRIMQDAGYIGSFDMIDDGRGGQFRVHLSGRINKCGAITPRYSVGLDELEYWETRYLPGKNFGLLILSTSRGVLTHNQARQNGIGGELLGFVY 130
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_METIG (30S ribosomal protein S8P OS=Methanococcus igneus GN=rps8p PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 1.052e-24 Identity = 53/115 (46.09%), Postives = 75/115 (65.22%), Query Frame = -3 Query: 133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477 N E+ GK+ I P+SK+I + L MQ HGYIGE E+++D RAG VEL G++NKCG I PR+ V E + R LP+R +G ++++T GIM H EA+ K +GG+L + Y Sbjct: 16 NCERVGKKVFYIKPASKLIGRVLKVMQDHGYIGEFEFIEDGRAGIFKVELIGKINKCGAIKPRYAVKKHEFEKFEKRYLPARDFGLLIVSTSQGIMTHYEAKEKGIGGRLISYVY 130
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_METKA (30S ribosomal protein S8P OS=Methanopyrus kandleri GN=rps8p PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 1.374e-24 Identity = 51/115 (44.35%), Postives = 76/115 (66.09%), Query Frame = -3 Query: 133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477 N E G ++ +I P+SK+I + L MQ++GYIG E++DD R+GK +V+L GR+N CGVI PR V E W R LP+R +G +++TT G+M H EA+ + +GG+L + Y Sbjct: 16 NNEMVGNKECVIEPASKLIGRVLKVMQEYGYIGSFEFIDDGRSGKFLVKLVGRINDCGVIKPRHPVKKDEWEYWEQRYLPARDFGLLIVTTPEGVMSHYEAKERGIGGRLLAYVY 130 The following BLAST results are available for this feature:
BLAST of CF836004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 98
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836004 ID=CF836004; Name=CF836004; organism=Citrus sinensis; type=EST; length=488bpback to top |