CF836004

Overview
NameCF836004
Unique NameCF836004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1709 contig Csv1_Contig1709:119..606. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_METJA (30S ribosomal protein S8P OS=Methanocaldococcus jannaschii GN=rps8p PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.343e-24
Identity = 52/115 (45.22%), Postives = 77/115 (66.96%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            N E+ GK+ V I P+SK+I + L  MQ +GYIGE E+++D RAG   VEL G++NKCG I PRF V       +  R LP+R +G ++++T  G+M HEEA+++ +GG+L  + Y
Sbjct:   16 NCERVGKKVVYIKPASKLIGRVLKVMQDNGYIGEFEFIEDGRAGIFKVELIGKINKCGAIKPRFPVKKFGYEKFEKRYLPARDFGILIVSTTQGVMSHEEAKKRGLGGRLLAYVY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_METLZ (30S ribosomal protein S8P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps8p PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.060e-24
Identity = 51/115 (44.35%), Postives = 75/115 (65.22%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            NA   GK  V + P+S++    L  MQ++GYI   E +DD R G+  + L+G +NKCGVI+PRF V V+++  W  R LP + +G I+LTT  G+M HE+AR+  VGG+L G+ +
Sbjct:   16 NAGDTGKLAVTVEPASRLFGDMLKVMQEYGYITGFEKIDDGRGGQFQIALSGGINKCGVITPRFSVKVEDLESWEIRYLPGKGFGIIILTTSKGVMSHEQARKLGVGGELLGYVF 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_PYRAE (30S ribosomal protein S8P OS=Pyrobaculum aerophilum GN=rps8p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.997e-24
Identity = 49/115 (42.61%), Postives = 76/115 (66.09%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            NAE  GK+Q +I P +K+    L  +Q++GY+GE EY+DD + GK +V+L G++N  G I PR+ V  +EIV W  + LP+RQ G ++++T  G+M H EA+ + +GG L  + Y
Sbjct:   16 NAEIVGKKQAVIWPVNKLTYYTLRVLQRYGYVGEIEYIDDGKGGKYIVQLLGKINDIGPIRPRYPVKYREIVQWEQKFLPARQIGILIISTSQGVMSHIEAKERKIGGVLLAYVY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_NITMS (30S ribosomal protein S8P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.220e-24
Identity = 52/118 (44.07%), Postives = 74/118 (62.71%), Query Frame = -3
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            ++YN E R K +  I P+SK+ I+ L  +QK GYIGE E++DD R GK  ++L  ++ KCG ISPRF V   E   W  + LP+   G +++TT  G+M H EA +K +GG L G+ Y
Sbjct:   13 TLYNNETRRKGECTILPTSKLGIEVLKTLQKDGYIGEFEHIDDKRGGKFKIKLLAKITKCGAISPRFKVKTDEFNNWEQQYLPAYDRGMLLVTTNQGVMSHHEATQKGIGGFLIGYVY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_METMJ (30S ribosomal protein S8P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.220e-24
Identity = 46/115 (40.00%), Postives = 78/115 (67.83%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            NA   GK +V++ P+SK++   L  MQ++G+I   E++DD R G+  V+L+G +NKCG ISPRF V + ++  W  + LP++ +G ++++T  G++ H EAR + +GG+L G+ Y
Sbjct:   16 NAGDAGKGEVIVEPASKLLGAMLRVMQENGFISGFEFIDDGRGGQFRVQLSGTINKCGAISPRFPVAMADMEYWESQYLPAKNFGILIVSTSKGVISHAEARNEGIGGQLLGYVY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_IGNH4 (30S ribosomal protein S8P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps8p PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.220e-24
Identity = 54/121 (44.63%), Postives = 77/121 (63.64%), Query Frame = -3
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIV---GWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            ++YN E RG ++ +I P+SK+I   L  MQK GY+GE EY+DD R GKI V L GR+NKCG I PR  V  ++++       R LPS+  G ++++T  G+M H+EA +K VGG    + Y
Sbjct:   13 TIYNNEVRGNKEAIIMPASKLIANVLRIMQKEGYVGEFEYIDDGRWGKIRVRLLGRINKCGAIKPRVSVSYRDLLVLPEHLRRFLPSKDVGILIISTSQGLMTHKEAIQKRVGGIAIAYVY 133          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_STAMF (30S ribosomal protein S8P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 6.818e-24
Identity = 55/121 (45.45%), Postives = 78/121 (64.46%), Query Frame = -3
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEI---VGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            ++ NAE R K + +I P+SK+II  L  MQ+ GYIGE EY+DD R GKI V+L GR+NK GVI PRF V ++++     W  + LP+   G ++L+T  G++ H+EA  K  GG L  + Y
Sbjct:   13 TIQNAEMRAKSEALIWPASKLIINVLRVMQREGYIGEFEYIDDGRWGKIKVQLLGRINKTGVIKPRFPVKLRDLERMPHWLRKYLPAYNIGILILSTPHGVLSHKEAIAKKTGGVLLAYVY 133          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_METBF (30S ribosomal protein S8P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps8p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 6.818e-24
Identity = 53/115 (46.09%), Postives = 71/115 (61.74%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            NAE  GK   +I P+SK I   L  MQ  GYIGE E++DD +AG   V L GRVNKCG I PR+ VG      W  + LP++ +G +++TT +G+M   EAR K +GG+L  + Y
Sbjct:   16 NAEAIGKSSCIIRPASKNIGNVLKVMQDLGYIGEFEFIDDGKAGIYSVTLVGRVNKCGAIKPRYSVGTGSFERWEKQFLPAKNFGALIITTSSGVMSQYEAREKKIGGQLLAYVY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_DESK1 (30S ribosomal protein S8P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps8p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 6.818e-24
Identity = 53/121 (43.80%), Postives = 79/121 (65.29%), Query Frame = -3
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIV---GWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            ++YNAE R K++V++ P+SK+ +  L  +Q+ GYIGE EY+DD R GKI ++L GR+NK GVI PR+ V  +E+     W  R LP+   G I+++T  G++ H+EA  K  GG L  + Y
Sbjct:   13 AIYNAEIRAKKEVVVWPASKLTLNVLKVLQREGYIGEFEYIDDGRWGKIKIQLLGRINKIGVIKPRYPVKHRELAEFPEWLKRYLPAYNIGVIIVSTPYGVLSHKEAVEKQTGGVLLAYCY 133          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_METS3 (30S ribosomal protein S8P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps8p PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 8.904e-24
Identity = 53/115 (46.09%), Postives = 74/115 (64.35%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            N E + K   +ISP+SK+I + L  MQK  YIG  EY+DD+RAG+  VEL G +NKCGVI PR  V   E   +  R LP++ +G +++TT  GIM H EA+ + +GG+L  + Y
Sbjct:   16 NNELQVKDSCVISPASKLIGEVLSTMQKENYIGNFEYIDDNRAGQFKVELEGNINKCGVIKPRHAVKKDEFEKFEKRYLPAKNFGILIVTTPEGIMTHYEAKERGIGGRLLAYMY 130          
The following BLAST results are available for this feature:
BLAST of CF836004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS8_METJA2.343e-2445.2230S ribosomal protein S8P OS=Methanocaldococcus ja... [more]
RS8_METLZ3.060e-2444.3530S ribosomal protein S8P OS=Methanocorpusculum la... [more]
RS8_PYRAE3.997e-2442.6130S ribosomal protein S8P OS=Pyrobaculum aerophilu... [more]
RS8_NITMS5.220e-2444.0730S ribosomal protein S8P OS=Nitrosopumilus mariti... [more]
RS8_METMJ5.220e-2440.0030S ribosomal protein S8P OS=Methanoculleus marisn... [more]
RS8_IGNH45.220e-2444.6330S ribosomal protein S8P OS=Ignicoccus hospitalis... [more]
RS8_STAMF6.818e-2445.4530S ribosomal protein S8P OS=Staphylothermus marin... [more]
RS8_METBF6.818e-2446.0930S ribosomal protein S8P OS=Methanosarcina barker... [more]
RS8_DESK16.818e-2443.8030S ribosomal protein S8P OS=Desulfurococcus kamch... [more]
RS8_METS38.904e-2446.0930S ribosomal protein S8P OS=Methanobrevibacter sm... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E07_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836004 ID=CF836004; Name=CF836004; organism=Citrus sinensis; type=EST; length=488bp
AGGCACCAATCCGAGTTTAGAAATGCATAGTTAAATCAAGTAAAACAAAG
AGAAGCTATTCCATTTGTGAACAAGTTCTTCCAAAGTACACAAACAAAAC
TCAAGTCCCATTCTCAATATGAACTTTGCCTAATAGAAAAAACCAAACAG
TTTACCACCAACGTTCTTCCTTCTCGCCTCTTCGTGGCCCATAATGCCAG
CACAAGTTGTCAGCACAATGTATCCATACTGTCTTGAGGGAAGCAACCTA
CCAGTCCAACCTACAATCTCCTTGACGCCAACATCAAAACGGGGACTGAT
AACCCCACATTTGTTCACTCTTCCGTTCAGTTCAACCACAATCTTACCAG
CTCTGTGGTCATCAACATACTCAGACTCACCAATGTACCCGTGCTTTTGC
ATCGCCAGAAGAAACTTAATGATAACCTTGGAGGATGGGCTGATCATAAC
CTGACGCTTCCCCCTTTTCTCGGCATTATACATGCTCT
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