CF836004
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_METJA (30S ribosomal protein S8P OS=Methanocaldococcus jannaschii GN=rps8p PE=1 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 2.343e-24 Identity = 52/115 (45.22%), Postives = 77/115 (66.96%), Query Frame = -3 Query: 133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477 N E+ GK+ V I P+SK+I + L MQ +GYIGE E+++D RAG VEL G++NKCG I PRF V + R LP+R +G ++++T G+M HEEA+++ +GG+L + Y Sbjct: 16 NCERVGKKVVYIKPASKLIGRVLKVMQDNGYIGEFEFIEDGRAGIFKVELIGKINKCGAIKPRFPVKKFGYEKFEKRYLPARDFGILIVSTTQGVMSHEEAKKRGLGGRLLAYVY 130
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_METLZ (30S ribosomal protein S8P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps8p PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 3.060e-24 Identity = 51/115 (44.35%), Postives = 75/115 (65.22%), Query Frame = -3 Query: 133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477 NA GK V + P+S++ L MQ++GYI E +DD R G+ + L+G +NKCGVI+PRF V V+++ W R LP + +G I+LTT G+M HE+AR+ VGG+L G+ + Sbjct: 16 NAGDTGKLAVTVEPASRLFGDMLKVMQEYGYITGFEKIDDGRGGQFQIALSGGINKCGVITPRFSVKVEDLESWEIRYLPGKGFGIIILTTSKGVMSHEQARKLGVGGELLGYVF 130
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_PYRAE (30S ribosomal protein S8P OS=Pyrobaculum aerophilum GN=rps8p PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 3.997e-24 Identity = 49/115 (42.61%), Postives = 76/115 (66.09%), Query Frame = -3 Query: 133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477 NAE GK+Q +I P +K+ L +Q++GY+GE EY+DD + GK +V+L G++N G I PR+ V +EIV W + LP+RQ G ++++T G+M H EA+ + +GG L + Y Sbjct: 16 NAEIVGKKQAVIWPVNKLTYYTLRVLQRYGYVGEIEYIDDGKGGKYIVQLLGKINDIGPIRPRYPVKYREIVQWEQKFLPARQIGILIISTSQGVMSHIEAKERKIGGVLLAYVY 130
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_NITMS (30S ribosomal protein S8P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps8p PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 5.220e-24 Identity = 52/118 (44.07%), Postives = 74/118 (62.71%), Query Frame = -3 Query: 133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486 ++YN E R K + I P+SK+ I+ L +QK GYIGE E++DD R GK ++L ++ KCG ISPRF V E W + LP+ G +++TT G+M H EA +K +GG L G+ Y Sbjct: 13 TLYNNETRRKGECTILPTSKLGIEVLKTLQKDGYIGEFEHIDDKRGGKFKIKLLAKITKCGAISPRFKVKTDEFNNWEQQYLPAYDRGMLLVTTNQGVMSHHEATQKGIGGFLIGYVY 130
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_METMJ (30S ribosomal protein S8P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps8p PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 5.220e-24 Identity = 46/115 (40.00%), Postives = 78/115 (67.83%), Query Frame = -3 Query: 133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477 NA GK +V++ P+SK++ L MQ++G+I E++DD R G+ V+L+G +NKCG ISPRF V + ++ W + LP++ +G ++++T G++ H EAR + +GG+L G+ Y Sbjct: 16 NAGDAGKGEVIVEPASKLLGAMLRVMQENGFISGFEFIDDGRGGQFRVQLSGTINKCGAISPRFPVAMADMEYWESQYLPAKNFGILIVSTSKGVISHAEARNEGIGGQLLGYVY 130
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_IGNH4 (30S ribosomal protein S8P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps8p PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 5.220e-24 Identity = 54/121 (44.63%), Postives = 77/121 (63.64%), Query Frame = -3 Query: 133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIV---GWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486 ++YN E RG ++ +I P+SK+I L MQK GY+GE EY+DD R GKI V L GR+NKCG I PR V ++++ R LPS+ G ++++T G+M H+EA +K VGG + Y Sbjct: 13 TIYNNEVRGNKEAIIMPASKLIANVLRIMQKEGYVGEFEYIDDGRWGKIRVRLLGRINKCGAIKPRVSVSYRDLLVLPEHLRRFLPSKDVGILIISTSQGLMTHKEAIQKRVGGIAIAYVY 133
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_STAMF (30S ribosomal protein S8P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps8p PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 6.818e-24 Identity = 55/121 (45.45%), Postives = 78/121 (64.46%), Query Frame = -3 Query: 133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEI---VGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486 ++ NAE R K + +I P+SK+II L MQ+ GYIGE EY+DD R GKI V+L GR+NK GVI PRF V ++++ W + LP+ G ++L+T G++ H+EA K GG L + Y Sbjct: 13 TIQNAEMRAKSEALIWPASKLIINVLRVMQREGYIGEFEYIDDGRWGKIKVQLLGRINKTGVIKPRFPVKLRDLERMPHWLRKYLPAYNIGILILSTPHGVLSHKEAIAKKTGGVLLAYVY 133
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_METBF (30S ribosomal protein S8P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps8p PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 6.818e-24 Identity = 53/115 (46.09%), Postives = 71/115 (61.74%), Query Frame = -3 Query: 133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477 NAE GK +I P+SK I L MQ GYIGE E++DD +AG V L GRVNKCG I PR+ VG W + LP++ +G +++TT +G+M EAR K +GG+L + Y Sbjct: 16 NAEAIGKSSCIIRPASKNIGNVLKVMQDLGYIGEFEFIDDGKAGIYSVTLVGRVNKCGAIKPRYSVGTGSFERWEKQFLPAKNFGALIITTSSGVMSQYEAREKKIGGQLLAYVY 130
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_DESK1 (30S ribosomal protein S8P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps8p PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 6.818e-24 Identity = 53/121 (43.80%), Postives = 79/121 (65.29%), Query Frame = -3 Query: 133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIV---GWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486 ++YNAE R K++V++ P+SK+ + L +Q+ GYIGE EY+DD R GKI ++L GR+NK GVI PR+ V +E+ W R LP+ G I+++T G++ H+EA K GG L + Y Sbjct: 13 AIYNAEIRAKKEVVVWPASKLTLNVLKVLQREGYIGEFEYIDDGRWGKIKIQLLGRINKIGVIKPRYPVKHRELAEFPEWLKRYLPAYNIGVIIVSTPYGVLSHKEAVEKQTGGVLLAYCY 133
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_METS3 (30S ribosomal protein S8P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps8p PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 8.904e-24 Identity = 53/115 (46.09%), Postives = 74/115 (64.35%), Query Frame = -3 Query: 133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477 N E + K +ISP+SK+I + L MQK YIG EY+DD+RAG+ VEL G +NKCGVI PR V E + R LP++ +G +++TT GIM H EA+ + +GG+L + Y Sbjct: 16 NNELQVKDSCVISPASKLIGEVLSTMQKENYIGNFEYIDDNRAGQFKVELEGNINKCGVIKPRHAVKKDEFEKFEKRYLPAKNFGILIVTTPEGIMTHYEAKERGIGGRLLAYMY 130 The following BLAST results are available for this feature:
BLAST of CF836004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 98
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836004 ID=CF836004; Name=CF836004; organism=Citrus sinensis; type=EST; length=488bpback to top |