CF836004
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_METB6 (30S ribosomal protein S8P OS=Methanoregula boonei (strain 6A8) GN=rps8p PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 8.904e-24 Identity = 49/118 (41.53%), Postives = 76/118 (64.41%), Query Frame = -3 Query: 133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486 ++ NA GK +V I P+SK++ L MQ GYI E+++D R G++ V L G++NKCG I PRF V + E+ W + LP + +G ++L+T G+M H +ARR+ +GG+L G+ Y Sbjct: 13 ALKNAGDTGKSEVTIEPASKLLGAMLRIMQDAGYIAGFEFIEDGRGGQLKVHLTGKINKCGAICPRFSVQLDEMEYWEKQYLPGKNFGLMILSTSHGVMSHVQARREGIGGELLGYVY 130
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_PYRKO (30S ribosomal protein S8P OS=Pyrococcus kodakaraensis GN=rps8p PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.163e-23 Identity = 50/115 (43.48%), Postives = 77/115 (66.96%), Query Frame = -3 Query: 133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477 N+E+ GK++V I P+SK+I + L M ++GYIGE E +DD RAG V+L G++NK G I PRF V ++ W R LP+ ++G ++++T G+M H+EA K +GG+L + Y Sbjct: 16 NSERVGKKEVYIKPASKLIGEVLRVMLENGYIGEFELIDDGRAGIYRVQLIGKINKAGAIKPRFPVKARDYEKWEKRFLPAFEFGILIVSTSQGVMTHKEALEKGIGGRLIAYVY 130
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_METMA (30S ribosomal protein S8P OS=Methanosarcina mazei GN=rps8p PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 2.591e-23 Identity = 51/115 (44.35%), Postives = 71/115 (61.74%), Query Frame = -3 Query: 133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477 NAE GK ++ P+SK I L MQ GYIG+ E++DD +AG V L GR+NKCG I PR+ VG W + LP++ +G ++LTT +G+M EAR K +GG+L + Y Sbjct: 16 NAEAIGKSSCIVRPASKNIGNVLKVMQDLGYIGDFEFIDDGKAGIYSVTLVGRINKCGAIKPRYSVGTGSFERWEKQFLPAKNFGALILTTSSGVMSQYEARDKKIGGQLLAYVY 130
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_METAC (30S ribosomal protein S8P OS=Methanosarcina acetivorans GN=rps8p PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 4.419e-23 Identity = 50/115 (43.48%), Postives = 71/115 (61.74%), Query Frame = -3 Query: 133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477 NAE GK ++ P+SK I L MQ GYIG+ E++DD +AG V L GR+NKCG I PR+ VG W + LP++ +G +++TT +G+M EAR K +GG+L + Y Sbjct: 16 NAEAIGKSSCVVRPASKNIGNVLKVMQDLGYIGDFEFIDDGKAGIYSVTLVGRINKCGAIKPRYSVGTASFERWEKQFLPAKNFGALIVTTSSGVMSQYEARDKKIGGQLLAYVY 130
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_HALLT (30S ribosomal protein S8P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps8p PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 4.419e-23 Identity = 48/117 (41.03%), Postives = 68/117 (58.12%), Query Frame = -3 Query: 133 MYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 483 M NAE G + P+S +I L + GY+ EYVDD +AGK VEL G +N+CG + PR+ G E W R LP+R YG +++TT G+M H EAR + +GG++ + Y Sbjct: 14 MDNAESVGHLSYTVEPASNIIGSVLEVLYDRGYVDGFEYVDDGKAGKFEVELKGAINECGAVKPRYSAGADEFEKWEKRYLPARDYGTLIVTTSHGVMSHYEAREEGIGGQVIAYVY 130
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_ARCFU (30S ribosomal protein S8P OS=Archaeoglobus fulgidus GN=rps8p PE=3 SV=2) HSP 1 Score: 104.76 bits (260), Expect = 2.193e-22 Identity = 48/115 (41.74%), Postives = 74/115 (64.35%), Query Frame = -3 Query: 133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477 NAE G+++ I P+SK+I L M+ +GYI EYV++HR GK +VEL+G +N CG I PRF V E + R LP+R +G ++++T G+M ++AR++ +GG L + Y Sbjct: 15 NAEMVGEKKCEIKPASKLIGNVLKVMKDYGYIKGFEYVENHRGGKFIVELSGNINDCGAIRPRFSSSVTEYEMYEKRYLPARDFGILIVSTTKGVMSQKDARKQRLGGVLLAYVY 129
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_CENSY (30S ribosomal protein S8P OS=Cenarchaeum symbiosum GN=rps8p PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 3.741e-22 Identity = 50/118 (42.37%), Postives = 71/118 (60.17%), Query Frame = -3 Query: 133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486 ++YN E R + + P+SK+ ++ L ++K GYIGE E+V+D R GK V L ++ KCG ISPRF V E W + LPS G +V+TT G+M H EA + +GG L G+ Y Sbjct: 13 TLYNTEARRRGDCQVYPTSKLGVEVLGTLKKAGYIGEFEHVEDSRGGKFSVHLLAKITKCGAISPRFKVKKGEYTFWEQQYLPSYDRGMLVVTTNQGVMSHHEAAERGIGGFLIGYVY 130
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_THEAC (30S ribosomal protein S8P OS=Thermoplasma acidophilum GN=rps8p PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 4.886e-22 Identity = 48/118 (40.68%), Postives = 73/118 (61.86%), Query Frame = -3 Query: 133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486 S+ NA + GKR+++ P++K+I K L MQ + YI E +D+ R GK + LN +N CGVI PRF V + + + R LP+ +G ++LTT G+M + EAR+ +GGKL + Y Sbjct: 12 SIKNASRLGKREIIAEPAAKLIGKVLKVMQDYNYIKSFEVIDESRGGKFKIVLNTTINNCGVIKPRFPVKNENLEKYEARYLPAEDFGILILTTTKGVMSNIEARKLGIGGKLLAYVY 129
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_METTL (30S ribosomal protein S8P OS=Methanococcus thermolithotrophicus GN=rps8p PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 8.334e-22 Identity = 47/115 (40.87%), Postives = 74/115 (64.35%), Query Frame = -3 Query: 133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477 N E GK + P+SK+I + L MQ HGYIG EY++D RAG VEL G++NKCG + PR+ V +E + R LP++ +G ++++T G+M H+EA+ + +GG+L + + Sbjct: 16 NCEGVGKSVAYVKPASKLIGRVLNVMQDHGYIGNFEYIEDGRAGIYKVELIGQINKCGAVKPRYAVKKQEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEAKNQGLGGRLISYVF 130
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_THEVO (30S ribosomal protein S8P OS=Thermoplasma volcanium GN=rps8p PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.088e-21 Identity = 47/118 (39.83%), Postives = 73/118 (61.86%), Query Frame = -3 Query: 133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486 S+ NA + G+R+++ P++K+I K L MQ + YI E +D+ R GK + LN +N CGVI PRF V + + + R LP+ +G ++LTT G+M + EAR+ +GGKL + Y Sbjct: 12 SIKNASRLGRREIIAEPAAKLIGKVLKVMQDYNYIKSFEVIDESRGGKFKIVLNTTINNCGVIKPRFPVKNENLEKYESRYLPAEDFGILILTTTKGVMSNIEARKLGIGGKLLAYVY 129 The following BLAST results are available for this feature:
BLAST of CF836004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 98
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836004 ID=CF836004; Name=CF836004; organism=Citrus sinensis; type=EST; length=488bpback to top |