CF836004

Overview
NameCF836004
Unique NameCF836004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_METB6 (30S ribosomal protein S8P OS=Methanoregula boonei (strain 6A8) GN=rps8p PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 8.904e-24
Identity = 49/118 (41.53%), Postives = 76/118 (64.41%), Query Frame = -3
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            ++ NA   GK +V I P+SK++   L  MQ  GYI   E+++D R G++ V L G++NKCG I PRF V + E+  W  + LP + +G ++L+T  G+M H +ARR+ +GG+L G+ Y
Sbjct:   13 ALKNAGDTGKSEVTIEPASKLLGAMLRIMQDAGYIAGFEFIEDGRGGQLKVHLTGKINKCGAICPRFSVQLDEMEYWEKQYLPGKNFGLMILSTSHGVMSHVQARREGIGGELLGYVY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_PYRKO (30S ribosomal protein S8P OS=Pyrococcus kodakaraensis GN=rps8p PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.163e-23
Identity = 50/115 (43.48%), Postives = 77/115 (66.96%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            N+E+ GK++V I P+SK+I + L  M ++GYIGE E +DD RAG   V+L G++NK G I PRF V  ++   W  R LP+ ++G ++++T  G+M H+EA  K +GG+L  + Y
Sbjct:   16 NSERVGKKEVYIKPASKLIGEVLRVMLENGYIGEFELIDDGRAGIYRVQLIGKINKAGAIKPRFPVKARDYEKWEKRFLPAFEFGILIVSTSQGVMTHKEALEKGIGGRLIAYVY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_METMA (30S ribosomal protein S8P OS=Methanosarcina mazei GN=rps8p PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.591e-23
Identity = 51/115 (44.35%), Postives = 71/115 (61.74%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            NAE  GK   ++ P+SK I   L  MQ  GYIG+ E++DD +AG   V L GR+NKCG I PR+ VG      W  + LP++ +G ++LTT +G+M   EAR K +GG+L  + Y
Sbjct:   16 NAEAIGKSSCIVRPASKNIGNVLKVMQDLGYIGDFEFIDDGKAGIYSVTLVGRINKCGAIKPRYSVGTGSFERWEKQFLPAKNFGALILTTSSGVMSQYEARDKKIGGQLLAYVY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_METAC (30S ribosomal protein S8P OS=Methanosarcina acetivorans GN=rps8p PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.419e-23
Identity = 50/115 (43.48%), Postives = 71/115 (61.74%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            NAE  GK   ++ P+SK I   L  MQ  GYIG+ E++DD +AG   V L GR+NKCG I PR+ VG      W  + LP++ +G +++TT +G+M   EAR K +GG+L  + Y
Sbjct:   16 NAEAIGKSSCVVRPASKNIGNVLKVMQDLGYIGDFEFIDDGKAGIYSVTLVGRINKCGAIKPRYSVGTASFERWEKQFLPAKNFGALIVTTSSGVMSQYEARDKKIGGQLLAYVY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_HALLT (30S ribosomal protein S8P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps8p PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.419e-23
Identity = 48/117 (41.03%), Postives = 68/117 (58.12%), Query Frame = -3
Query:  133 MYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 483
            M NAE  G     + P+S +I   L  +   GY+   EYVDD +AGK  VEL G +N+CG + PR+  G  E   W  R LP+R YG +++TT  G+M H EAR + +GG++  + Y
Sbjct:   14 MDNAESVGHLSYTVEPASNIIGSVLEVLYDRGYVDGFEYVDDGKAGKFEVELKGAINECGAVKPRYSAGADEFEKWEKRYLPARDYGTLIVTTSHGVMSHYEAREEGIGGQVIAYVY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_ARCFU (30S ribosomal protein S8P OS=Archaeoglobus fulgidus GN=rps8p PE=3 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 2.193e-22
Identity = 48/115 (41.74%), Postives = 74/115 (64.35%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            NAE  G+++  I P+SK+I   L  M+ +GYI   EYV++HR GK +VEL+G +N CG I PRF   V E   +  R LP+R +G ++++T  G+M  ++AR++ +GG L  + Y
Sbjct:   15 NAEMVGEKKCEIKPASKLIGNVLKVMKDYGYIKGFEYVENHRGGKFIVELSGNINDCGAIRPRFSSSVTEYEMYEKRYLPARDFGILIVSTTKGVMSQKDARKQRLGGVLLAYVY 129          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_CENSY (30S ribosomal protein S8P OS=Cenarchaeum symbiosum GN=rps8p PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.741e-22
Identity = 50/118 (42.37%), Postives = 71/118 (60.17%), Query Frame = -3
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            ++YN E R +    + P+SK+ ++ L  ++K GYIGE E+V+D R GK  V L  ++ KCG ISPRF V   E   W  + LPS   G +V+TT  G+M H EA  + +GG L G+ Y
Sbjct:   13 TLYNTEARRRGDCQVYPTSKLGVEVLGTLKKAGYIGEFEHVEDSRGGKFSVHLLAKITKCGAISPRFKVKKGEYTFWEQQYLPSYDRGMLVVTTNQGVMSHHEAAERGIGGFLIGYVY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_THEAC (30S ribosomal protein S8P OS=Thermoplasma acidophilum GN=rps8p PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.886e-22
Identity = 48/118 (40.68%), Postives = 73/118 (61.86%), Query Frame = -3
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            S+ NA + GKR+++  P++K+I K L  MQ + YI   E +D+ R GK  + LN  +N CGVI PRF V  + +  +  R LP+  +G ++LTT  G+M + EAR+  +GGKL  + Y
Sbjct:   12 SIKNASRLGKREIIAEPAAKLIGKVLKVMQDYNYIKSFEVIDESRGGKFKIVLNTTINNCGVIKPRFPVKNENLEKYEARYLPAEDFGILILTTTKGVMSNIEARKLGIGGKLLAYVY 129          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_METTL (30S ribosomal protein S8P OS=Methanococcus thermolithotrophicus GN=rps8p PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 8.334e-22
Identity = 47/115 (40.87%), Postives = 74/115 (64.35%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            N E  GK    + P+SK+I + L  MQ HGYIG  EY++D RAG   VEL G++NKCG + PR+ V  +E   +  R LP++ +G ++++T  G+M H+EA+ + +GG+L  + +
Sbjct:   16 NCEGVGKSVAYVKPASKLIGRVLNVMQDHGYIGNFEYIEDGRAGIYKVELIGQINKCGAVKPRYAVKKQEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEAKNQGLGGRLISYVF 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_THEVO (30S ribosomal protein S8P OS=Thermoplasma volcanium GN=rps8p PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.088e-21
Identity = 47/118 (39.83%), Postives = 73/118 (61.86%), Query Frame = -3
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            S+ NA + G+R+++  P++K+I K L  MQ + YI   E +D+ R GK  + LN  +N CGVI PRF V  + +  +  R LP+  +G ++LTT  G+M + EAR+  +GGKL  + Y
Sbjct:   12 SIKNASRLGRREIIAEPAAKLIGKVLKVMQDYNYIKSFEVIDESRGGKFKIVLNTTINNCGVIKPRFPVKNENLEKYESRYLPAEDFGILILTTTKGVMSNIEARKLGIGGKLLAYVY 129          
The following BLAST results are available for this feature:
BLAST of CF836004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS8_METB68.904e-2441.5330S ribosomal protein S8P OS=Methanoregula boonei ... [more]
RS8_PYRKO1.163e-2343.4830S ribosomal protein S8P OS=Pyrococcus kodakaraen... [more]
RS8_METMA2.591e-2344.3530S ribosomal protein S8P OS=Methanosarcina mazei ... [more]
RS8_METAC4.419e-2343.4830S ribosomal protein S8P OS=Methanosarcina acetiv... [more]
RS8_HALLT4.419e-2341.0330S ribosomal protein S8P OS=Halorubrum lacusprofu... [more]
RS8_ARCFU2.193e-2241.7430S ribosomal protein S8P OS=Archaeoglobus fulgidu... [more]
RS8_CENSY3.741e-2242.3730S ribosomal protein S8P OS=Cenarchaeum symbiosum... [more]
RS8_THEAC4.886e-2240.6830S ribosomal protein S8P OS=Thermoplasma acidophi... [more]
RS8_METTL8.334e-2240.8730S ribosomal protein S8P OS=Methanococcus thermol... [more]
RS8_THEVO1.088e-2139.8330S ribosomal protein S8P OS=Thermoplasma volcaniu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E07_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836004 ID=CF836004; Name=CF836004; organism=Citrus sinensis; type=EST; length=488bp
AGGCACCAATCCGAGTTTAGAAATGCATAGTTAAATCAAGTAAAACAAAG
AGAAGCTATTCCATTTGTGAACAAGTTCTTCCAAAGTACACAAACAAAAC
TCAAGTCCCATTCTCAATATGAACTTTGCCTAATAGAAAAAACCAAACAG
TTTACCACCAACGTTCTTCCTTCTCGCCTCTTCGTGGCCCATAATGCCAG
CACAAGTTGTCAGCACAATGTATCCATACTGTCTTGAGGGAAGCAACCTA
CCAGTCCAACCTACAATCTCCTTGACGCCAACATCAAAACGGGGACTGAT
AACCCCACATTTGTTCACTCTTCCGTTCAGTTCAACCACAATCTTACCAG
CTCTGTGGTCATCAACATACTCAGACTCACCAATGTACCCGTGCTTTTGC
ATCGCCAGAAGAAACTTAATGATAACCTTGGAGGATGGGCTGATCATAAC
CTGACGCTTCCCCCTTTTCTCGGCATTATACATGCTCT
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