CF836004

Overview
NameCF836004
Unique NameCF836004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_PICTO (30S ribosomal protein S8P OS=Picrophilus torridus GN=rps8p PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.088e-21
Identity = 50/115 (43.48%), Postives = 70/115 (60.87%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            NA + GK +V+I P+S +I + L  MQ + YI   E +++ R GK  VEL+  +N CGVI PR  V    I  +  R LP++ +G I+LTT  GIM H EAR+  +GGKL  + Y
Sbjct:   15 NASRIGKSEVIIGPASVMIGRILKVMQDYNYIKSFEVIEEERGGKFRVELSDTINNCGVIKPRLSVKNSNIERYESRYLPAQDFGIIILTTTKGIMSHIEARKLGIGGKLLAYVY 129          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_HALWD (30S ribosomal protein S8P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps8p PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.088e-21
Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            NAE  G     I P+S VI   L      GYI   E+VDD +AG+  VEL+G +N+CG + PR+  G  E   W  R LP+R YG +++TT  G+M H EAR   +GG++  + Y
Sbjct:   16 NAESVGHLSHEIQPASNVIGSVLEVFYDRGYINGFEFVDDGKAGRFEVELSGGINECGAVKPRYSAGADEFERWEKRYLPARDYGALIVTTSHGVMSHYEARETGIGGQVIAYVY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_METHJ (30S ribosomal protein S8P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps8p PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.422e-21
Identity = 45/118 (38.14%), Postives = 75/118 (63.56%), Query Frame = -3
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            ++ NA   G+ + ++ P+ ++I + L  M++ GYI E   ++D R G+  V ++G +NKCG ISPR+ V + E+  W    LPS+  G ++++T  G+MGH +ARR  VGG+L G+ Y
Sbjct:   13 TLKNASDTGRAECIVQPAGRLIGELLRIMKEAGYIKEYTRIEDGRGGQFKVVMSGLINKCGCISPRYSVSLDEMEYWEQLYLPSKNIGMLMISTSKGVMGHHDARRNGVGGELLGYVY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_HALMA (30S ribosomal protein S8P OS=Haloarcula marismortui GN=rps8p PE=1 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 1.422e-21
Identity = 49/118 (41.53%), Postives = 68/118 (57.63%), Query Frame = -3
Query:  133 SMYNAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 486
            ++ NAE  G  +  +SP+S  I   L      GYI    +VDD +AG+  VEL G +N+CG + PR+  G  E   W  R LP+R YG +V+TT  GIM H EAR + VGG++  + Y
Sbjct:   13 ALNNAESVGHLEQTVSPASNEIGSVLEVFYDRGYIDGFSFVDDGKAGEFEVELKGAINECGPVKPRYSAGADEFEKWEKRFLPARDYGTLVVTTSHGIMSHYEAREQGVGGQVIAYVY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_METVS (30S ribosomal protein S8P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps8p PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.425e-21
Identity = 47/115 (40.87%), Postives = 72/115 (62.61%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            N E  GK    + P+SK+I + L  MQ  GYIG  EY++D +AG   V+L G++NKCG + PR+ V  +E   +  R LP++ +G ++++T  G+M H+EAR   VGG+L  + Y
Sbjct:   16 NCEGVGKNVAYLKPASKLIGRVLKVMQDQGYIGNFEYIEDGKAGVYKVDLIGQINKCGAVKPRYAVKYQEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARTAGVGGRLISYVY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_METVA (30S ribosomal protein S8P OS=Methanococcus vannielii GN=rps8p PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.425e-21
Identity = 47/115 (40.87%), Postives = 72/115 (62.61%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            N E  GK    + P+SK+I + L  MQ  GYIG  EY++D +AG   V+L G++NKCG + PR+ V  +E   +  R LP++ +G ++++T  G+M H+EAR   VGG+L  + Y
Sbjct:   16 NCEGVGKNVAYLKPASKLIGRVLKVMQDQGYIGNFEYIEDGKAGVYKVDLIGQINKCGAVKPRYAVKYQEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARTAGVGGRLISYVY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_NATPD (30S ribosomal protein S8P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps8p PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.167e-21
Identity = 45/115 (39.13%), Postives = 66/115 (57.39%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            NAE  G  +  I P+S  I   L      GY+   ++VDD +AG+  VEL G +N+CG + PR+  G  E   W  R LP+R YG +++TT  G+M H EAR + +GG++  + Y
Sbjct:   16 NAESVGHLEQTIQPASNEIGSVLEVFYDRGYVDGFQFVDDGKAGRFEVELKGAINECGAVKPRYSAGADEFEKWEKRFLPARDYGTLIVTTSHGVMSHYEAREQGIGGQVIAYVY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_METM7 (30S ribosomal protein S8P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps8p PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.167e-21
Identity = 47/115 (40.87%), Postives = 71/115 (61.74%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            N E  GK    + P+SK+I + L  MQ  GYIG  EY++D +AG   V+L G++NKCG + PRF V   +   +  R LP++ +G ++++T  G+M H+EAR   VGG+L  + Y
Sbjct:   16 NCESVGKNVAYLKPASKLIGRVLNVMQDQGYIGNFEYIEDGKAGVYKVDLIGQINKCGAVKPRFAVKNHDFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARNAGVGGRLISYIY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_METVO (30S ribosomal protein S8P OS=Methanococcus voltae GN=rps8p PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.136e-21
Identity = 46/115 (40.00%), Postives = 71/115 (61.74%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            N E  GK    + P+SK+I + L  MQ  GYIG  EY++D +AG   V L G++NKCG + PRF V  +E   +  R LP++ +G ++++T  G+M H+EA+   +GG+L  + Y
Sbjct:   16 NCENVGKNTAYLKPASKLIGRVLKVMQDQGYIGNFEYIEDGKAGVYKVTLIGQINKCGAVKPRFAVKNQEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEAKDSGIGGRLISYIY 130          
BLAST of CF836004 vs. ExPASy Swiss-Prot
Match: RS8_METM6 (30S ribosomal protein S8P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps8p PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.136e-21
Identity = 47/115 (40.87%), Postives = 71/115 (61.74%), Query Frame = -3
Query:  133 NAEKRGKRQVMISPSSKVIIKFLLAMQKHGYIGESEYVDDHRAGKIVVELNGRVNKCGVISPRFDVGVKEIVGWTGRLLPSRQYGYIVLTTCAGIMGHEEARRKNVGGKLFGFFY 477
            N E  GK    + P+SK+I + L  MQ  GYIG  EY++D +AG   V+L G++NKCG + PRF V   +   +  R LP++ +G ++++T  G+M H+EAR   VGG+L  + Y
Sbjct:   16 NCESVGKNVAYLKPASKLIGRVLNVMQDQGYIGNFEYIEDGKAGVYKVDLIGQINKCGAVKPRFAVKNHDFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARSAGVGGRLISYIY 130          
The following BLAST results are available for this feature:
BLAST of CF836004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS8_PICTO1.088e-2143.4830S ribosomal protein S8P OS=Picrophilus torridus ... [more]
RS8_HALWD1.088e-2141.7430S ribosomal protein S8P OS=Haloquadratum walsbyi... [more]
RS8_METHJ1.422e-2138.1430S ribosomal protein S8P OS=Methanospirillum hung... [more]
RS8_HALMA1.422e-2141.5330S ribosomal protein S8P OS=Haloarcula marismortu... [more]
RS8_METVS2.425e-2140.8730S ribosomal protein S8P OS=Methanococcus vanniel... [more]
RS8_METVA2.425e-2140.8730S ribosomal protein S8P OS=Methanococcus vanniel... [more]
RS8_NATPD3.167e-2139.1330S ribosomal protein S8P OS=Natronomonas pharaoni... [more]
RS8_METM73.167e-2140.8730S ribosomal protein S8P OS=Methanococcus maripal... [more]
RS8_METVO4.136e-2140.0030S ribosomal protein S8P OS=Methanococcus voltae ... [more]
RS8_METM64.136e-2140.8730S ribosomal protein S8P OS=Methanococcus maripal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E07_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836004 ID=CF836004; Name=CF836004; organism=Citrus sinensis; type=EST; length=488bp
AGGCACCAATCCGAGTTTAGAAATGCATAGTTAAATCAAGTAAAACAAAG
AGAAGCTATTCCATTTGTGAACAAGTTCTTCCAAAGTACACAAACAAAAC
TCAAGTCCCATTCTCAATATGAACTTTGCCTAATAGAAAAAACCAAACAG
TTTACCACCAACGTTCTTCCTTCTCGCCTCTTCGTGGCCCATAATGCCAG
CACAAGTTGTCAGCACAATGTATCCATACTGTCTTGAGGGAAGCAACCTA
CCAGTCCAACCTACAATCTCCTTGACGCCAACATCAAAACGGGGACTGAT
AACCCCACATTTGTTCACTCTTCCGTTCAGTTCAACCACAATCTTACCAG
CTCTGTGGTCATCAACATACTCAGACTCACCAATGTACCCGTGCTTTTGC
ATCGCCAGAAGAAACTTAATGATAACCTTGGAGGATGGGCTGATCATAAC
CTGACGCTTCCCCCTTTTCTCGGCATTATACATGCTCT
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