CF836005

Overview
NameCF836005
Unique NameCF836005
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length284
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1709 contig Csv1_Contig1709:23..306. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS15A_DROME (40S ribosomal protein S15Aa OS=Drosophila melanogaster GN=RpS15Aa PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 2.621e-24
Identity = 56/74 (75.68%), Postives = 62/74 (83.78%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284
            MV ++VL DALK + NAEKRGKRQV++ P SKVIIKFL VM KHGYIGEFE VDDHR+GKIVV L GRLN CGV
Sbjct:    1 MVRMNVLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEFEIVDDHRSGKIVVNLTGRLNKCGV 74          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS15B_DROME (40S ribosomal protein S15Ab OS=Drosophila melanogaster GN=RpS15Ab PE=2 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 3.423e-24
Identity = 56/74 (75.68%), Postives = 62/74 (83.78%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284
            MV ++VL DALK + NAEKRGKRQV++ P SKVIIKFL VM KHGYIGEFE V+DHRAGKIVV L GRLN CGV
Sbjct:    1 MVRMNVLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEFEIVEDHRAGKIVVNLTGRLNKCGV 74          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS15A_STRPU (40S ribosomal protein S15a OS=Strongylocentrotus purpuratus GN=RPS15A PE=2 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 7.626e-24
Identity = 54/74 (72.97%), Postives = 62/74 (83.78%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284
            MV ++VL DAL+S+ NAEKR KRQV+I P SKV +KFL+VM KHGYIGEFE VDDHR GKI+V LNGRLN CGV
Sbjct:    1 MVRMNVLADALRSICNAEKRCKRQVLIRPCSKVTVKFLMVMMKHGYIGEFEIVDDHRGGKIIVNLNGRLNKCGV 74          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS15A_ICTPU (40S ribosomal protein S15a OS=Ictalurus punctatus GN=rps15a PE=2 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 1.301e-23
Identity = 54/74 (72.97%), Postives = 61/74 (82.43%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284
            MV ++VL DALK + NAEKRGK QV+I P SKVI++FL VM KHGYIGEFE +DDHRAGKIVV L GRLN CGV
Sbjct:    1 MVRMNVLADALKCINNAEKRGKAQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGV 74          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS22_SCHPO (40S ribosomal protein S22 OS=Schizosaccharomyces pombe GN=rps22a PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.943e-23
Identity = 51/74 (68.92%), Postives = 62/74 (83.78%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284
            MV  SVL D L ++ NAE+RG+RQV+I PSSKVI+KFL VMQKHGYI EF  +DDHR+GKIV++LNGR+N CGV
Sbjct:    1 MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGKIVIQLNGRINKCGV 74          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS15A_DICDI (40S ribosomal protein S15a OS=Dictyostelium discoideum GN=rps15a PE=2 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 1.438e-22
Identity = 51/74 (68.92%), Postives = 62/74 (83.78%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284
            MV +SVLND L S+ NAE++GKRQV++ PSSKVI+KFL VM K  YIGEFE VDDHR+GKIV++L GR+N CGV
Sbjct:    1 MVRISVLNDCLNSIVNAERQGKRQVLVRPSSKVIVKFLEVMMKKRYIGEFEIVDDHRSGKIVIDLIGRINKCGV 74          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS15A_PARLI (40S ribosomal protein S15a OS=Paracentrotus lividus GN=RPS15A PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 4.185e-22
Identity = 53/74 (71.62%), Postives = 60/74 (81.08%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284
            MV ++VL  AL+ + NAEKR KRQV+I P SKV IKFL+VM KHGYIGEFE VDDHR GKI+V LNGRLN CGV
Sbjct:    1 MVRMNVLAAALRCICNAEKRCKRQVLIRPCSKVTIKFLMVMIKHGYIGEFEVVDDHRGGKIIVNLNGRLNKCGV 74          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_METS5 (30S ribosomal protein S8P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps8p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.253e-18
Identity = 41/73 (56.16%), Postives = 56/73 (76.71%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CG 281
            M +++ L++AL S+YN E R  +Q +I PSSK+I+  L VMQK GY+GEFEY+DD R GKI+V+L GR+N CG
Sbjct:    1 MTVINTLSNALSSLYNNEMRRNKQAIIMPSSKLIVNVLRVMQKEGYVGEFEYIDDGRWGKILVQLMGRINKCG 73          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_SULAC (30S ribosomal protein S8P OS=Sulfolobus acidocaldarius GN=rps8p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.294e-17
Identity = 42/73 (57.53%), Postives = 55/73 (75.34%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CG 281
            M  ++ L +AL ++YN E R  +Q +I P+SK+II  L VMQK GYIGEFEY+DD RAGKI+V+L GR+N CG
Sbjct:    1 MPSINPLANALATLYNNEMRRNKQALITPASKLIISVLRVMQKEGYIGEFEYIDDGRAGKIIVQLLGRINKCG 73          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_SULSO (30S ribosomal protein S8P OS=Sulfolobus solfataricus GN=rps8p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.179e-16
Identity = 42/73 (57.53%), Postives = 54/73 (73.97%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CG 281
            MV V+ L +AL S+YN E R  +Q +I P+SK++I  L VMQK GY+GEFEY+DD R GKI V+L GR+N CG
Sbjct:    1 MVFVNPLANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCG 73          
The following BLAST results are available for this feature:
BLAST of CF836005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RS15A_DROME2.621e-2475.6840S ribosomal protein S15Aa OS=Drosophila melanoga... [more]
RS15B_DROME3.423e-2475.6840S ribosomal protein S15Ab OS=Drosophila melanoga... [more]
RS15A_STRPU7.626e-2472.9740S ribosomal protein S15a OS=Strongylocentrotus p... [more]
RS15A_ICTPU1.301e-2372.9740S ribosomal protein S15a OS=Ictalurus punctatus ... [more]
RS22_SCHPO4.943e-2368.9240S ribosomal protein S22 OS=Schizosaccharomyces p... [more]
RS15A_DICDI1.438e-2268.9240S ribosomal protein S15a OS=Dictyostelium discoi... [more]
RS15A_PARLI4.185e-2271.6240S ribosomal protein S15a OS=Paracentrotus lividu... [more]
RS8_METS56.253e-1856.1630S ribosomal protein S8P OS=Metallosphaera sedula... [more]
RS8_SULAC5.294e-1757.5330S ribosomal protein S8P OS=Sulfolobus acidocalda... [more]
RS8_SULSO1.179e-1657.5330S ribosomal protein S8P OS=Sulfolobus solfataric... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836005 ID=CF836005; Name=CF836005; organism=Citrus sinensis; type=EST; length=284bp
CTTTTGCAGCTCACTTACTCTTTCAGAGGCGCCTCTCCCTGCTTTGATTT
GCCTTCGCAACAATGGTGATAGTTAGTGTTCTGAATGACGCTCTTAAGAG
CATGTATAATGCCGAGAAAAGGGGGAAGCGTCAGGTTATGATCTGACCAT
CCTCCAAGGTTATCATTAAGTTTCTTCTGGTGATGCAAAAGCACGGGTAC
ATTGGTGAGTTTGAGTATGTTGATGACCACAGAGCTGGTAAGATTGTGGT
TGAACTGAACGGAAGATTGAACTAATGTGGGGTT
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