CF836005
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_STAMF (30S ribosomal protein S8P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps8p PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 2.905e-15 Identity = 41/74 (55.41%), Postives = 54/74 (72.97%), Query Frame = 3 Query: 63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284 MV++ L +AL ++ NAE R K + +I P+SK+II L VMQ+ GYIGEFEY+DD R GKI V+L GR+N GV Sbjct: 1 MVMLDTLANALATIQNAEMRAKSEALIWPASKLIINVLRVMQREGYIGEFEYIDDGRWGKIKVQLLGRINKTGV 74
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_METTH (30S ribosomal protein S8P OS=Methanobacterium thermoautotrophicum GN=rps8p PE=3 SV=2) HSP 1 Score: 77.7962 bits (190), Expect = 1.883e-14 Identity = 40/74 (54.05%), Postives = 51/74 (68.92%), Query Frame = 3 Query: 63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284 M ++ L +AL ++ N E RG + I P+SK+I + L MQK GYIGEFEYVDD RAGK +VEL G +N CGV Sbjct: 1 MTLMDPLANALTNIRNNEIRGNVKCRITPASKLIGRVLRTMQKEGYIGEFEYVDDGRAGKFIVELEGNINHCGV 74
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_HYPBU (30S ribosomal protein S8P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps8p PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 1.883e-14 Identity = 40/74 (54.05%), Postives = 53/74 (71.62%), Query Frame = 3 Query: 63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284 MV++ L +A+ ++ NAE R K +V+I P+SK+I L VMQ+ GYIGEFEY+DD R GKI V L GR+N GV Sbjct: 1 MVMLDTLANAMAAIVNAEMRAKPEVIIMPASKLIANVLRVMQREGYIGEFEYIDDGRWGKIRVRLLGRINKAGV 74
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_THENV (30S ribosomal protein S8P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps8p PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 4.194e-14 Identity = 38/73 (52.05%), Postives = 53/73 (72.60%), Query Frame = 3 Query: 63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CG 281 MV++ +L++AL + NAE GKRQV I P +K+I L V+Q+HGY+GE EY+DD R GK VV+L G++N G Sbjct: 1 MVMLDLLSNALIQIKNAEAMGKRQVAIWPVNKLIYYTLRVLQRHGYVGEVEYIDDGRGGKYVVQLLGKINDIG 73
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_PYRCJ (30S ribosomal protein S8P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps8p PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 4.194e-14 Identity = 37/73 (50.68%), Postives = 55/73 (75.34%), Query Frame = 3 Query: 63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CG 281 MV++ +L++AL ++ NAE GKRQV+I P +K+I L V+Q++GY+GE EY+DD R GK VV+L G++N G Sbjct: 1 MVMLDLLSNALTAIKNAEAMGKRQVVIWPVNKLIYYTLRVLQRYGYVGEIEYIDDGRGGKYVVQLLGKINDIG 73
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_KORCO (30S ribosomal protein S8P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps8p PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.082e-13 Identity = 39/74 (52.70%), Postives = 51/74 (68.92%), Query Frame = 3 Query: 63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284 M + L DA+ ++ N GKR+V+I +SK+I K L V+++HGYI EFEYVDD R GK VV LNGR+N GV Sbjct: 1 MTRLDPLADAMSTLTNGSMLGKREVVINIASKLIGKVLKVLKEHGYIDEFEYVDDGRFGKYVVRLNGRINKAGV 74
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_PYRIL (30S ribosomal protein S8P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps8p PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 2.719e-13 Identity = 36/73 (49.32%), Postives = 54/73 (73.97%), Query Frame = 3 Query: 63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CG 281 MV++ +L++AL + NAE GK+QV+I P +K+I L V+Q++GY+GE EY+DD R GK VV+L G++N G Sbjct: 1 MVMLDLLSNALIQIKNAEIMGKKQVVIWPVNKLIYHTLRVLQRYGYVGEIEYIDDGRGGKYVVQLLGKINDIG 73
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_PYRFU (30S ribosomal protein S8P OS=Pyrococcus furiosus GN=rps8p PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 2.719e-13 Identity = 38/73 (52.05%), Postives = 53/73 (72.60%), Query Frame = 3 Query: 63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CG 281 M ++ L +AL + N+E+ GKR+V I P+SK+I + L VMQK+GYIGEFE++DD RAG V+L GR+N G Sbjct: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQLLGRINKAG 73
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_METKA (30S ribosomal protein S8P OS=Methanopyrus kandleri GN=rps8p PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 2.719e-13 Identity = 35/74 (47.30%), Postives = 54/74 (72.97%), Query Frame = 3 Query: 63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284 M ++ L DA+ ++ N E G ++ +I P+SK+I + L VMQ++GYIG FE++DD R+GK +V+L GR+N CGV Sbjct: 1 MTLMDPLADAMATIKNNEMVGNKECVIEPASKLIGRVLKVMQEYGYIGSFEFIDDGRSGKFLVKLVGRINDCGV 74
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_PYRHO (30S ribosomal protein S8P OS=Pyrococcus horikoshii GN=rps8p PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 3.551e-13 Identity = 37/73 (50.68%), Postives = 53/73 (72.60%), Query Frame = 3 Query: 63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CG 281 M ++ L +AL + N+E+ GKR++ I P+SK+I + L VMQK+GYIGEFE++DD RAG V+L GR+N G Sbjct: 1 MTLLDPLANALSHITNSERVGKREIYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQLLGRINKAG 73 The following BLAST results are available for this feature:
BLAST of CF836005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 72
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836005 ID=CF836005; Name=CF836005; organism=Citrus sinensis; type=EST; length=284bpback to top |