CF836005

Overview
NameCF836005
Unique NameCF836005
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length284
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_STAMF (30S ribosomal protein S8P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.905e-15
Identity = 41/74 (55.41%), Postives = 54/74 (72.97%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284
            MV++  L +AL ++ NAE R K + +I P+SK+II  L VMQ+ GYIGEFEY+DD R GKI V+L GR+N  GV
Sbjct:    1 MVMLDTLANALATIQNAEMRAKSEALIWPASKLIINVLRVMQREGYIGEFEYIDDGRWGKIKVQLLGRINKTGV 74          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_METTH (30S ribosomal protein S8P OS=Methanobacterium thermoautotrophicum GN=rps8p PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.883e-14
Identity = 40/74 (54.05%), Postives = 51/74 (68.92%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284
            M ++  L +AL ++ N E RG  +  I P+SK+I + L  MQK GYIGEFEYVDD RAGK +VEL G +N CGV
Sbjct:    1 MTLMDPLANALTNIRNNEIRGNVKCRITPASKLIGRVLRTMQKEGYIGEFEYVDDGRAGKFIVELEGNINHCGV 74          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_HYPBU (30S ribosomal protein S8P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps8p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.883e-14
Identity = 40/74 (54.05%), Postives = 53/74 (71.62%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284
            MV++  L +A+ ++ NAE R K +V+I P+SK+I   L VMQ+ GYIGEFEY+DD R GKI V L GR+N  GV
Sbjct:    1 MVMLDTLANAMAAIVNAEMRAKPEVIIMPASKLIANVLRVMQREGYIGEFEYIDDGRWGKIRVRLLGRINKAGV 74          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_THENV (30S ribosomal protein S8P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps8p PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.194e-14
Identity = 38/73 (52.05%), Postives = 53/73 (72.60%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CG 281
            MV++ +L++AL  + NAE  GKRQV I P +K+I   L V+Q+HGY+GE EY+DD R GK VV+L G++N  G
Sbjct:    1 MVMLDLLSNALIQIKNAEAMGKRQVAIWPVNKLIYYTLRVLQRHGYVGEVEYIDDGRGGKYVVQLLGKINDIG 73          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_PYRCJ (30S ribosomal protein S8P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.194e-14
Identity = 37/73 (50.68%), Postives = 55/73 (75.34%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CG 281
            MV++ +L++AL ++ NAE  GKRQV+I P +K+I   L V+Q++GY+GE EY+DD R GK VV+L G++N  G
Sbjct:    1 MVMLDLLSNALTAIKNAEAMGKRQVVIWPVNKLIYYTLRVLQRYGYVGEIEYIDDGRGGKYVVQLLGKINDIG 73          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_KORCO (30S ribosomal protein S8P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps8p PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.082e-13
Identity = 39/74 (52.70%), Postives = 51/74 (68.92%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284
            M  +  L DA+ ++ N    GKR+V+I  +SK+I K L V+++HGYI EFEYVDD R GK VV LNGR+N  GV
Sbjct:    1 MTRLDPLADAMSTLTNGSMLGKREVVINIASKLIGKVLKVLKEHGYIDEFEYVDDGRFGKYVVRLNGRINKAGV 74          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_PYRIL (30S ribosomal protein S8P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps8p PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.719e-13
Identity = 36/73 (49.32%), Postives = 54/73 (73.97%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CG 281
            MV++ +L++AL  + NAE  GK+QV+I P +K+I   L V+Q++GY+GE EY+DD R GK VV+L G++N  G
Sbjct:    1 MVMLDLLSNALIQIKNAEIMGKKQVVIWPVNKLIYHTLRVLQRYGYVGEIEYIDDGRGGKYVVQLLGKINDIG 73          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_PYRFU (30S ribosomal protein S8P OS=Pyrococcus furiosus GN=rps8p PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.719e-13
Identity = 38/73 (52.05%), Postives = 53/73 (72.60%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CG 281
            M ++  L +AL  + N+E+ GKR+V I P+SK+I + L VMQK+GYIGEFE++DD RAG   V+L GR+N  G
Sbjct:    1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQLLGRINKAG 73          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_METKA (30S ribosomal protein S8P OS=Methanopyrus kandleri GN=rps8p PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.719e-13
Identity = 35/74 (47.30%), Postives = 54/74 (72.97%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284
            M ++  L DA+ ++ N E  G ++ +I P+SK+I + L VMQ++GYIG FE++DD R+GK +V+L GR+N CGV
Sbjct:    1 MTLMDPLADAMATIKNNEMVGNKECVIEPASKLIGRVLKVMQEYGYIGSFEFIDDGRSGKFLVKLVGRINDCGV 74          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_PYRHO (30S ribosomal protein S8P OS=Pyrococcus horikoshii GN=rps8p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.551e-13
Identity = 37/73 (50.68%), Postives = 53/73 (72.60%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CG 281
            M ++  L +AL  + N+E+ GKR++ I P+SK+I + L VMQK+GYIGEFE++DD RAG   V+L GR+N  G
Sbjct:    1 MTLLDPLANALSHITNSERVGKREIYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQLLGRINKAG 73          
The following BLAST results are available for this feature:
BLAST of CF836005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RS8_STAMF2.905e-1555.4130S ribosomal protein S8P OS=Staphylothermus marin... [more]
RS8_METTH1.883e-1454.0530S ribosomal protein S8P OS=Methanobacterium ther... [more]
RS8_HYPBU1.883e-1454.0530S ribosomal protein S8P OS=Hyperthermus butylicu... [more]
RS8_THENV4.194e-1452.0530S ribosomal protein S8P OS=Thermoproteus neutrop... [more]
RS8_PYRCJ4.194e-1450.6830S ribosomal protein S8P OS=Pyrobaculum calidifon... [more]
RS8_KORCO2.082e-1352.7030S ribosomal protein S8P OS=Korarchaeum cryptofil... [more]
RS8_PYRIL2.719e-1349.3230S ribosomal protein S8P OS=Pyrobaculum islandicu... [more]
RS8_PYRFU2.719e-1352.0530S ribosomal protein S8P OS=Pyrococcus furiosus G... [more]
RS8_METKA2.719e-1347.3030S ribosomal protein S8P OS=Methanopyrus kandleri... [more]
RS8_PYRHO3.551e-1350.6830S ribosomal protein S8P OS=Pyrococcus horikoshii... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836005 ID=CF836005; Name=CF836005; organism=Citrus sinensis; type=EST; length=284bp
CTTTTGCAGCTCACTTACTCTTTCAGAGGCGCCTCTCCCTGCTTTGATTT
GCCTTCGCAACAATGGTGATAGTTAGTGTTCTGAATGACGCTCTTAAGAG
CATGTATAATGCCGAGAAAAGGGGGAAGCGTCAGGTTATGATCTGACCAT
CCTCCAAGGTTATCATTAAGTTTCTTCTGGTGATGCAAAAGCACGGGTAC
ATTGGTGAGTTTGAGTATGTTGATGACCACAGAGCTGGTAAGATTGTGGT
TGAACTGAACGGAAGATTGAACTAATGTGGGGTT
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