CF836005

Overview
NameCF836005
Unique NameCF836005
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length284
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_AERPE (30S ribosomal protein S8P OS=Aeropyrum pernix GN=rps8p PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.551e-13
Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284
            MV++  L +A+ ++ NAE RGK + +I PSSK+I   L +++K GYIG FEY+DD R GK  V+L GR+N  GV
Sbjct:    1 MVMLDTLANAMAAIKNAEMRGKGEAIIMPSSKLIANVLRILEKEGYIGGFEYIDDGRWGKFRVKLLGRINDIGV 74          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_PYRAR (30S ribosomal protein S8P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps8p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.637e-13
Identity = 36/73 (49.32%), Postives = 52/73 (71.23%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CG 281
            MV++ +L++AL  + NAE  GKRQV I P +K+    L V+Q++GY+GE EYVDD R GK +V+L G++N  G
Sbjct:    1 MVMLDILSNALIQIKNAEVMGKRQVTIWPVNKLTYYTLRVLQRYGYVGEIEYVDDGRGGKYIVQLLGKINDIG 73          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_PYRAB (30S ribosomal protein S8P OS=Pyrococcus abyssi GN=rps8p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.057e-13
Identity = 37/73 (50.68%), Postives = 53/73 (72.60%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CG 281
            M ++  L +AL  + N+E+ GKR+V I P+SK+I + L VMQK+GYIGEFE++DD RAG   V+L G++N  G
Sbjct:    1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQLLGKINKAG 73          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_THEPD (30S ribosomal protein S8P OS=Thermofilum pendens (strain Hrk 5) GN=rps8p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.910e-13
Identity = 36/73 (49.32%), Postives = 52/73 (71.23%), Query Frame = 3
Query:   66 VIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284
            +++  L +AL ++ N E RGK+Q +I PSSK+I+  L  +++ GYIG+FE +DD R GKIVV L GR+N  GV
Sbjct:    1 MMLDTLANALSTIMNNEVRGKKQCVIYPSSKLIVAVLDTLKRSGYIGDFELIDDGRGGKIVVNLLGRINKIGV 73          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_UNCMA (30S ribosomal protein S8P OS=Uncultured methanogenic archaeon RC-I GN=rps8p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.033e-12
Identity = 36/74 (48.65%), Postives = 52/74 (70.27%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284
            MV++  L +AL  + NAE  GK   +I P+SK+I   L VMQ  GY+GEFE+VD+ +AG++ V+L G++N CGV
Sbjct:    1 MVLMDPLANALSVIKNAETTGKTDCVIDPASKIIGNVLKVMQDQGYVGEFEFVDNGKAGQLKVKLIGKINKCGV 74          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: R15A2_ARATH (40S ribosomal protein S15a-2 OS=Arabidopsis thaliana GN=RPS15AB PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.033e-12
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 3
Query:   78 VLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*C 278
            +LNDAL+++ NAEKRGK  V + P S V+  FL +M++ GYI  F+  D HR G+I V+L GR+N C
Sbjct:    5 ILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRITVDLQGRVNDC 71          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: R15A5_ARATH (40S ribosomal protein S15a-5 OS=Arabidopsis thaliana GN=RPS15AE PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.349e-12
Identity = 33/67 (49.25%), Postives = 47/67 (70.15%), Query Frame = 3
Query:   78 VLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*C 278
            +LNDAL+++ NAE+RGK  V + P S V+  FL +M++ GYI  F+  D HR G+I V+L GR+N C
Sbjct:    5 ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDLQGRVNDC 71          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_METIG (30S ribosomal protein S8P OS=Methanococcus igneus GN=rps8p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.762e-12
Identity = 36/73 (49.32%), Postives = 50/73 (68.49%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CG 281
            M ++  L +AL  + N E+ GK+   I P+SK+I + L VMQ HGYIGEFE+++D RAG   VEL G++N CG
Sbjct:    1 MSLMDPLANALNHLTNCERVGKKVFYIKPASKLIGRVLKVMQDHGYIGEFEFIEDGRAGIFKVELIGKINKCG 73          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_METJA (30S ribosomal protein S8P OS=Methanocaldococcus jannaschii GN=rps8p PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.926e-12
Identity = 36/73 (49.32%), Postives = 51/73 (69.86%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CG 281
            M ++  L +AL  + N E+ GK+ V I P+SK+I + L VMQ +GYIGEFE+++D RAG   VEL G++N CG
Sbjct:    1 MSLMDPLANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNGYIGEFEFIEDGRAGIFKVELIGKINKCG 73          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_METS3 (30S ribosomal protein S8P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps8p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.127e-12
Identity = 36/74 (48.65%), Postives = 49/74 (66.22%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284
            M ++  L DAL ++ N E + K   +I P+SK+I + L  MQK  YIG FEY+DD+RAG+  VEL G +N CGV
Sbjct:    1 MSLMDPLADALTNIRNNELQVKDSCVISPASKLIGEVLSTMQKENYIGNFEYIDDNRAGQFKVELEGNINKCGV 74          
The following BLAST results are available for this feature:
BLAST of CF836005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RS8_AERPE3.551e-1350.0030S ribosomal protein S8P OS=Aeropyrum pernix GN=r... [more]
RS8_PYRAR4.637e-1349.3230S ribosomal protein S8P OS=Pyrobaculum arsenatic... [more]
RS8_PYRAB6.057e-1350.6830S ribosomal protein S8P OS=Pyrococcus abyssi GN=... [more]
RS8_THEPD7.910e-1349.3230S ribosomal protein S8P OS=Thermofilum pendens (... [more]
RS8_UNCMA1.033e-1248.6530S ribosomal protein S8P OS=Uncultured methanogen... [more]
R15A2_ARATH1.033e-1250.7540S ribosomal protein S15a-2 OS=Arabidopsis thalia... [more]
R15A5_ARATH1.349e-1249.2540S ribosomal protein S15a-5 OS=Arabidopsis thalia... [more]
RS8_METIG1.762e-1249.3230S ribosomal protein S8P OS=Methanococcus igneus ... [more]
RS8_METJA3.926e-1249.3230S ribosomal protein S8P OS=Methanocaldococcus ja... [more]
RS8_METS35.127e-1248.6530S ribosomal protein S8P OS=Methanobrevibacter sm... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836005 ID=CF836005; Name=CF836005; organism=Citrus sinensis; type=EST; length=284bp
CTTTTGCAGCTCACTTACTCTTTCAGAGGCGCCTCTCCCTGCTTTGATTT
GCCTTCGCAACAATGGTGATAGTTAGTGTTCTGAATGACGCTCTTAAGAG
CATGTATAATGCCGAGAAAAGGGGGAAGCGTCAGGTTATGATCTGACCAT
CCTCCAAGGTTATCATTAAGTTTCTTCTGGTGATGCAAAAGCACGGGTAC
ATTGGTGAGTTTGAGTATGTTGATGACCACAGAGCTGGTAAGATTGTGGT
TGAACTGAACGGAAGATTGAACTAATGTGGGGTT
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