CF836005

Overview
NameCF836005
Unique NameCF836005
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length284
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_THEON (30S ribosomal protein S8P OS=Thermococcus onnurineus (strain NA1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.696e-12
Identity = 35/73 (47.95%), Postives = 53/73 (72.60%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CG 281
            M ++  L +AL  + N+E+ GK++V I P+SK+I + L VMQ++GYIGEFE++DD RAG   V+L G++N  G
Sbjct:    1 MTLLDPLANALSHITNSERVGKKEVYIKPASKLIGEVLRVMQENGYIGEFEFIDDGRAGIYRVQLIGKINKAG 73          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_THEGJ (30S ribosomal protein S8P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps8p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.696e-12
Identity = 35/73 (47.95%), Postives = 53/73 (72.60%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CG 281
            M ++  L +AL  + N+E+ GK++V I P+SK+I + L VMQ++GYIGEFE++DD RAG   V+L G++N  G
Sbjct:    1 MTLLDPLANALSHITNSERVGKKEVYIKPASKLIGEVLRVMQENGYIGEFEFIDDGRAGIYRVQLIGKINKAG 73          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_THESM (30S ribosomal protein S8P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps8p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.746e-12
Identity = 36/73 (49.32%), Postives = 52/73 (71.23%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CG 281
            M ++  L +AL  + N+EK GK +V I P+SK+I + L VMQ++GYIGEFE++DD RAG   V+L G++N  G
Sbjct:    1 MTLLDPLANALSHITNSEKVGKSEVYIKPASKLIGEVLRVMQENGYIGEFEFIDDGRAGIYRVQLLGKVNKAG 73          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_PYRAE (30S ribosomal protein S8P OS=Pyrobaculum aerophilum GN=rps8p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.142e-11
Identity = 32/73 (43.84%), Postives = 52/73 (71.23%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CG 281
            MV++ +L++AL  + NAE  GK+Q +I P +K+    L V+Q++GY+GE EY+DD + GK +V+L G++N  G
Sbjct:    1 MVMLDILSNALIQIKNAEIVGKKQAVIWPVNKLTYYTLRVLQRYGYVGEIEYIDDGKGGKYIVQLLGKINDIG 73          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_METBU (30S ribosomal protein S8P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps8p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.142e-11
Identity = 37/73 (50.68%), Postives = 47/73 (64.38%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CG 281
            MV++  L DAL  + NAE  GK    I P+SK+I   L VM   GYIG+FE+V+D +AG   VEL GR+N CG
Sbjct:    1 MVLLDPLADALSIIKNAEAVGKDSCTIRPASKLIGNVLKVMNDRGYIGDFEFVEDGKAGVYTVELIGRINKCG 73          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_ARCFU (30S ribosomal protein S8P OS=Archaeoglobus fulgidus GN=rps8p PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.492e-11
Identity = 33/70 (47.14%), Postives = 50/70 (71.43%), Query Frame = 3
Query:   72 VSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CG 281
            V  L++A+ ++ NAE  G+++  I P+SK+I   L VM+ +GYI  FEYV++HR GK +VEL+G +N CG
Sbjct:    3 VDTLSNAMIAIKNAEMVGEKKCEIKPASKLIGNVLKVMKDYGYIKGFEYVENHRGGKFIVELSGNINDCG 72          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_METTP (30S ribosomal protein S8P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps8p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.948e-11
Identity = 34/73 (46.58%), Postives = 50/73 (68.49%), Query Frame = 3
Query:   66 VIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284
            +++  L DA+ ++ NAE  GK + +I P+SK+I   L VM   GYIGEFE++DD ++G   V+L GR+N CGV
Sbjct:    1 MLLDPLADAMSTIKNAENVGKPECIIKPASKLIAMTLKVMADLGYIGEFEFIDDGKSGMFKVKLLGRINRCGV 73          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_METTL (30S ribosomal protein S8P OS=Methanococcus thermolithotrophicus GN=rps8p PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.341e-11
Identity = 35/73 (47.95%), Postives = 47/73 (64.38%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CG 281
            M ++  L +AL  + N E  GK    + P+SK+I + L VMQ HGYIG FEY++D RAG   VEL G++N CG
Sbjct:    1 MSLMDPLANALNHISNCEGVGKSVAYVKPASKLIGRVLNVMQDHGYIGNFEYIEDGRAGIYKVELIGQINKCG 73          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_METBF (30S ribosomal protein S8P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps8p PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.341e-11
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CG 281
            MV++  L +AL ++ NAE  GK   +I P+SK I   L VMQ  GYIGEFE++DD +AG   V L GR+N CG
Sbjct:    1 MVLLDPLANALSTIKNAEAIGKSSCIIRPASKNIGNVLKVMQDLGYIGEFEFIDDGKAGIYSVTLVGRVNKCG 73          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_THEAC (30S ribosomal protein S8P OS=Thermoplasma acidophilum GN=rps8p PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.670e-11
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 3
Query:   81 LNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284
            LND + S+ NA + GKR+++  P++K+I K L VMQ + YI  FE +D+ R GK  + LN  +N CGV
Sbjct:    6 LNDVINSIKNASRLGKREIIAEPAAKLIGKVLKVMQDYNYIKSFEVIDESRGGKFKIVLNTTINNCGV 73          
The following BLAST results are available for this feature:
BLAST of CF836005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RS8_THEON6.696e-1247.9530S ribosomal protein S8P OS=Thermococcus onnurine... [more]
RS8_THEGJ6.696e-1247.9530S ribosomal protein S8P OS=Thermococcus gammatol... [more]
RS8_THESM8.746e-1249.3230S ribosomal protein S8P OS=Thermococcus sibiricu... [more]
RS8_PYRAE1.142e-1143.8430S ribosomal protein S8P OS=Pyrobaculum aerophilu... [more]
RS8_METBU1.142e-1150.6830S ribosomal protein S8P OS=Methanococcoides burt... [more]
RS8_ARCFU1.492e-1147.1430S ribosomal protein S8P OS=Archaeoglobus fulgidu... [more]
RS8_METTP1.948e-1146.5830S ribosomal protein S8P OS=Methanosaeta thermoph... [more]
RS8_METTL4.341e-1147.9530S ribosomal protein S8P OS=Methanococcus thermol... [more]
RS8_METBF4.341e-1150.6830S ribosomal protein S8P OS=Methanosarcina barker... [more]
RS8_THEAC9.670e-1145.5930S ribosomal protein S8P OS=Thermoplasma acidophi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02E07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836005 ID=CF836005; Name=CF836005; organism=Citrus sinensis; type=EST; length=284bp
CTTTTGCAGCTCACTTACTCTTTCAGAGGCGCCTCTCCCTGCTTTGATTT
GCCTTCGCAACAATGGTGATAGTTAGTGTTCTGAATGACGCTCTTAAGAG
CATGTATAATGCCGAGAAAAGGGGGAAGCGTCAGGTTATGATCTGACCAT
CCTCCAAGGTTATCATTAAGTTTCTTCTGGTGATGCAAAAGCACGGGTAC
ATTGGTGAGTTTGAGTATGTTGATGACCACAGAGCTGGTAAGATTGTGGT
TGAACTGAACGGAAGATTGAACTAATGTGGGGTT
back to top