CF836005

Overview
NameCF836005
Unique NameCF836005
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length284
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1709 contig Csv1_Contig1709:23..306. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_METMA (30S ribosomal protein S8P OS=Methanosarcina mazei GN=rps8p PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.670e-11
Identity = 35/73 (47.95%), Postives = 48/73 (65.75%), Query Frame = 3 
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CG 281
            MV++  L +AL ++ NAE  GK   ++ P+SK I   L VMQ  GYIG+FE++DD +AG   V L GR+N CG
Sbjct:    1 MVLLDPLANALSTIKNAEAIGKSSCIVRPASKNIGNVLKVMQDLGYIGDFEFIDDGKAGIYSVTLVGRINKCG 73
[Close]
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS8_METAC (30S ribosomal protein S8P OS=Methanosarcina acetivorans GN=rps8p PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.670e-11
Identity = 35/73 (47.95%), Postives = 48/73 (65.75%), Query Frame = 3 
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CG 281
            MV++  L +AL ++ NAE  GK   ++ P+SK I   L VMQ  GYIG+FE++DD +AG   V L GR+N CG
Sbjct:    1 MVLLDPLANALSTIKNAEAIGKSSCVVRPASKNIGNVLKVMQDLGYIGDFEFIDDGKAGIYSVTLVGRINKCG 73
The following BLAST results are available for this feature:
BLAST of CF836005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RS8_METMA9.670e-1147.9530S ribosomal protein S8P OS=Methanosarcina mazei ... [more]
RS8_METAC9.670e-1147.9530S ribosomal protein S8P OS=Methanosarcina acetiv... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836005 ID=CF836005; Name=CF836005; organism=Citrus sinensis; type=EST; length=284bp
CTTTTGCAGCTCACTTACTCTTTCAGAGGCGCCTCTCCCTGCTTTGATTT
GCCTTCGCAACAATGGTGATAGTTAGTGTTCTGAATGACGCTCTTAAGAG
CATGTATAATGCCGAGAAAAGGGGGAAGCGTCAGGTTATGATCTGACCAT
CCTCCAAGGTTATCATTAAGTTTCTTCTGGTGATGCAAAAGCACGGGTAC
ATTGGTGAGTTTGAGTATGTTGATGACCACAGAGCTGGTAAGATTGTGGT
TGAACTGAACGGAAGATTGAACTAATGTGGGGTT
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