CF836007

Overview
NameCF836007
Unique NameCF836007
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1398 contig Csv1_Contig1398:1..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836007 vs. ExPASy Swiss-Prot
Match: RL27_CAEEL (60S ribosomal protein L27 OS=Caenorhabditis elegans GN=rpl-27 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.651e-34
Identity = 68/136 (50.00%), Postives = 99/136 (72.79%), Query Frame = 3
Query:   57 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 461
            M K +KP K V++L+G+YAGRKAV+VK  D+G  +R Y H ++AGI +YP KV +    KK  K++++K F+K+V+Y HL+PTRY++DV   K  ++ ++L++  KK  A  E K + EER+KTGKN+WFFTKLRF
Sbjct:    1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEERYKTGKNKWFFTKLRF 136          
BLAST of CF836007 vs. ExPASy Swiss-Prot
Match: RL27A_SCHPO (60S ribosomal protein L27-A OS=Schizosaccharomyces pombe GN=rpl27a PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.651e-34
Identity = 65/136 (47.79%), Postives = 100/136 (73.53%), Query Frame = 3
Query:   57 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVD-LKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 461
            MVK LKP K  ++ +GR+AG+K VI+++ D G++   +GH +VAG+++YP KV +   AK+ A++SRVK F+K+VNY HLMPTRY L++D LK +++AD+ +   ++  A K  KK  EE++++GK+ WFFT LRF
Sbjct:    1 MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAKRIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEEKYQSGKSAWFFTPLRF 136          
BLAST of CF836007 vs. ExPASy Swiss-Prot
Match: RL27_CANAL (60S ribosomal protein L27 OS=Candida albicans GN=RPL27 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.803e-34
Identity = 69/136 (50.74%), Postives = 96/136 (70.59%), Query Frame = 3
Query:   57 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVD-LKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 461
            M KF+K  K  I+++GRYAG+K VIVK  D+GT+   + H +VAGI++ P KV +K  AKK  K+++VK FVKLVNY HLMPTRY+LDV+  K  V++++L+   ++  A K  KK  EE+ + GKN+WFF KL F
Sbjct:    1 MAKFIKSGKVAIVVRGRYAGKKVVIVKPHDEGTKSHPFPHAIVAGIERAPLKVTKKMDAKKVTKRTKVKPFVKLVNYNHLMPTRYSLDVESFKSAVTSEALEEPSQREEAKKVVKKAFEEKHQAGKNKWFFQKLHF 136          
BLAST of CF836007 vs. ExPASy Swiss-Prot
Match: RL27B_SCHPO (60S ribosomal protein L27-B OS=Schizosaccharomyces pombe GN=rpl27b PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.066e-33
Identity = 64/136 (47.06%), Postives = 96/136 (70.59%), Query Frame = 3
Query:   57 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVD-LKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 461
            MVK LKP K  ++ +GR+AG+K VI+++ D G++   +GH +VAG+++YP KV +   AK+ AK+SRVK F+K++NY HLMPTRY L++D LK +V+  +     ++  A K  K   EE+++TGK+ WFFT LRF
Sbjct:    1 MVKILKPGKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMGAKRIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSAAKKTVKNTFEEKYQTGKSAWFFTPLRF 136          
BLAST of CF836007 vs. ExPASy Swiss-Prot
Match: RL27_DICDI (60S ribosomal protein L27 OS=Dictyostelium discoideum GN=rpl27 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.871e-32
Identity = 69/142 (48.59%), Postives = 94/142 (66.20%), Query Frame = 3
Query:   63 KFLKPNKAVILLQGRYAGRKAVIVKSFDDGT--RERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLD-------VDLKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 461
            KF+KP + VILL G+YAGRKAV++K+FDD T  + R YGHCLVAGI KYP  ++R  S K   K++ +++FVK+VNY H+MPTRY  +         LK+ V+ +S Q   K+       KK  E + K GK++WFF+KLRF
Sbjct:    4 KFIKPGRLVILLNGKYAGRKAVVIKTFDDATASKSRPYGHCLVAGIDKYPRSIVRSMSRKTILKRTAIRSFVKVVNYNHIMPTRYNFEGRDESAFTGLKNTVTVESSQVA-KRAHTRLAVKKIFEAKHKAGKSKWFFSKLRF 144          
The following BLAST results are available for this feature:
BLAST of CF836007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL27_CAEEL1.651e-3450.0060S ribosomal protein L27 OS=Caenorhabditis elegan... [more]
RL27A_SCHPO1.651e-3447.7960S ribosomal protein L27-A OS=Schizosaccharomyces... [more]
RL27_CANAL4.803e-3450.7460S ribosomal protein L27 OS=Candida albicans GN=R... [more]
RL27B_SCHPO4.066e-3347.0660S ribosomal protein L27-B OS=Schizosaccharomyces... [more]
RL27_DICDI5.871e-3248.5960S ribosomal protein L27 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E08_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836007 ID=CF836007; Name=CF836007; organism=Citrus sinensis; type=EST; length=660bp
GCACAACACACCAATACCCAGAGAGAGCCGCGGGTGCGCGAGGAGCGAGA
GTTGAAATGGTGAAGTTTCTGAAACCAAACAAGGCCGTGATCCTTCTTCA
GGGCCGTTACGCCGGCCGGAAGGCGGTGATCGTGAAGTCGTTCGACGACG
GGACCCGCGAGAGGGCGTACGGGCACTGTTTGGTAGCGGGGATAAAGAAG
TACCCGGGCAAGGTCATCCGCAAGGACTCGGCGAAGAAGACAGCGAAGAA
GTCACGCGTCAAGGCCTTCGTCAAGTTGGTCAACTACCAGCACCTGATGC
CCACGCGCTACACTCTCGACGTCGATTTGAAGGACGTCGTGTCGGCCGAT
TCCCTCCAGAGCAAGGACAAGAAGGTGACCGCTTGCAAGGAGACCAAGAA
GCGCCTCGAGGAGAGGTTTAAGACTGGCAAGAATCGTTGGTTCTTTACTA
AGCTCAGGTTTTAGATTTTTAACCAAAGGAAGAAAACGACTTGTGTTTTT
GTTTTGTTTTATTTTGTGTTATTGAAAACGCTTTAGTTGTTAAAGTGCGA
ATTTTGAGATTTATGTAGTTTTTTGTGAACTTAATTTTATTTCTGGATCT
GGTACTATTTTTATGTGATAATATTGGGTTTATAATGTTTACTCAAAAAA
AAAAAAAAAA
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